- Transcript 'KH2012:KH.C7.86.v1.B...' >
- Transcript 'KH2012:KH.L141.53.v1...' >
- Transcript 'Cisavi.CG.ENS81.R7.2...' >
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- Transcript 'KH2012:KH.C7.448.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.448.v1.A.nonSL5-1
Possible name(s)
POLR1A; POLR2A; POLR3A
Gene model
Location
KhC7 [2,330,100 / 2,346,730]
Amino acid sequence
Length: 1,726
>KH.C7.448.v1.A.nonSL5-1
VDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVSEGGRPKLLGLMDPRQGVVDRMSRCQ
TCAGNMTDCPGHFGHIELAKPVFHTGFLTKTIKVLRCVCFYCSRLLVEKGNPKIRQIMAK
SKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKVGHGGCGRYQPKIRRE
GMELIAEWKHVNEDSQEKKIVVSAERVHEIFKRISDEESEILGMDPRFARPEWMINTVIP
VPPLCVRPSVVMGGGSARSQDDLTHKLADIIKANQQLKRNEQNGTASHIILEDVKLLQYH
VATLSDNDMPGVPKALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNL
KIDEVGVPRSIACNMTYPEIVTPFNIERMQELVRRGNNQYPGAKYIIRDSGDRIDLRYHP
KPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVKVLPWSTFRMNLSVTTPYN
ADFDGDEMNLHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGIVQDTLTAVRKMTKRDS
FIEKPDFMNLLMYLGDWDGYIPQPAILKPKPLWTGKQLFSLIIPPGINCIRNHSTHPDGE
DSGPYKHISPGDTRVLVENGILLSGIICKKSLGTSSGSLCHVVALEKNADVCREFYSNIQ
TCVNNWLMIEGHSIGIGDTIADAQTYQDIQTQIRKAKQEVIEVIEKAHKEDLQPTPGNTL
RQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINISQVIAVVGQQNV
EGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVK
TAETGYIQRRLVKAMEAVMVRYDGTIRQCNDFMIQLCYGEDGLAGEKVEFQNLATLKPSH
ATFNKKFRFDYSKERFMRRCMNEDVVRMIQTDVTIQQELETEFDQLQQDRENIRAIFPTG
DSKVVLPVNLSRLIWNAQKIFHIDLRSPSNLNPQRVIEGVRDLSKKLVIVCGEDRLSKEA
QSNATLLFNVHLRSTLCSRRVADEFRLSAEAFEWILGEIETKFQQAQVHPGEMVGALAAQ
SLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPRTPSLTIYLIGPATRDAQR
CKDVLCRLEHATLRKVTANTAIYYDPDPMNTVIQEDQEFVNVYYEMPDFDVTRISSWLLR
IELDRKRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDNAEKLVLRIRIMNSEEQKADEDT
EEQTDKMEDDVFLRYIEANMLTDMTLQGIPQIAKVYMHLPKEENKKRIVITKEGEFNAVQ
DWILETDGTALMRILSERDIDPVRTTSNDICEIFSVLGIEAVRKALEREINHVISFDGSY
VNYRHLALLCEVMTSKGHLMAITRHGINRQETGALMRCSFEETVDILMEAASSAETDHMD
GVSENIMLGQLVPGGTGCFGLLLDAEKCKYAMEIPTNIGVVGASYSPASPSYSPTSPSYS
PASPSYSPSNPKYSPASPSYSPASPEYSPSSPKYTPSSPSYSPASPSYSPSSPNYSPSSP
KYSPSSPSYSPASPSYSPTSPSYSPSSPGYSPSSPSYSPSSPGASSPAYSGQAGYSPSSP
SYSPTSPSYCPASPRYTPTSPTYTPGGDLSPASPSYSPTSPGAESPASPSYSPTSPSYSP
ASPMYSPTSPGYSPLSPGYSPASPSYTPSTPGGGQHHGQAKDSDED
Nucleotide sequence
Length: 5,554
>KH2012:KH.C7.448.v1.A.nonSL5-1
GTCGATTTAAAACTTGTAAAAAGAGTCCAGTTTGGTATTCTCAGCCCAGATGAAATCAAA
CGCATGTCAGTCACTGAAGGTGGGGTCCAATACCCTGAAGTGTCAGAAGGGGGAAGACCA
AAGCTGTTGGGGTTGATGGACCCACGTCAGGGGGTTGTTGATAGAATGTCAAGGTGCCAA
ACATGCGCTGGCAACATGACTGACTGTCCTGGACACTTTGGTCACATAGAACTTGCCAAA
CCTGTATTCCACACTGGCTTTCTAACGAAAACAATAAAAGTTCTTCGTTGTGTTTGTTTC
TACTGTTCGCGCTTGCTTGTTGAAAAGGGAAATCCAAAAATTCGTCAAATCATGGCTAAA
TCAAAGGGTCAACCCCGTAAGAGGTTAGCTCATGTCTACGAACTTTGTAAAGGGAAGAAT
ATTTGTGAAGGAGGTGAGGAGATGGATAATACATTTGATGTTCAGCAACGTGATGAAGAT
GAACCAAGAAAAGTGGGCCATGGTGGTTGTGGACGATACCAGCCAAAGATTAGACGAGAA
GGAATGGAATTAATTGCTGAGTGGAAACATGTGAATGAAGACTCACAAGAGAAAAAGATA
GTTGTTTCTGCGGAACGTGTGCATGAGATATTTAAGAGAATATCTGATGAAGAATCTGAG
ATCCTCGGGATGGATCCTCGTTTCGCGCGACCTGAATGGATGATAAACACTGTGATCCCC
GTTCCTCCCCTTTGTGTTCGACCATCAGTTGTTATGGGGGGAGGGAGTGCAAGGAGTCAG
GATGATTTAACTCACAAACTGGCCGACATTATTAAAGCAAACCAACAATTGAAACGCAAC
GAACAAAATGGAACTGCCTCCCATATTATACTGGAAGATGTGAAACTACTGCAGTATCAC
GTGGCTACGCTATCTGACAACGATATGCCTGGAGTGCCTAAGGCTTTACAAAAATCGGGC
CGTCCTTTAAAATCAATTAAACAACGATTAAAAGCAAAGGAAGGACGAATTCGTGGCAAC
TTGATGGGGAAGCGTGTTGACTTTTCTGCACGTACTGTCATCACACCTGATCCTAATTTA
AAAATTGATGAGGTTGGTGTTCCACGATCCATAGCTTGCAACATGACGTACCCGGAGATT
GTGACTCCTTTCAACATAGAGAGGATGCAAGAACTGGTTCGTCGTGGCAACAACCAGTAT
CCGGGAGCAAAATACATCATCCGTGACAGCGGGGATCGAATTGATCTTCGATATCATCCG
AAACCTTCTGATCTTCATCTGCAAGTTGGATACAAGGTTGAACGTCATATAAAAGATGGT
GATGTCATAGTGTTTAACCGACAACCTACTTTGCATAAAATGTCAATGATGGGACACAAA
GTTAAAGTCCTTCCCTGGTCAACCTTCAGAATGAATTTATCTGTGACCACCCCATATAAC
GCTGACTTCGATGGTGATGAAATGAACCTCCATGTTCCGCAAACCATGGAAACGAGAGCC
GAGATCCTCCAGTTGGCGATGGTGAACAGGATGATCATCACTCCTCAAAGCAATCGACCC
GTCATGGGAATCGTGCAAGATACGCTGACTGCTGTTCGTAAAATGACCAAACGAGATTCA
TTTATTGAAAAGCCCGACTTCATGAACTTACTAATGTACCTTGGTGACTGGGATGGGTAC
ATCCCCCAACCTGCAATCCTCAAACCAAAACCTCTATGGACGGGGAAACAACTCTTCTCG
CTCATTATTCCTCCTGGGATTAATTGCATCCGGAACCACAGCACTCATCCTGATGGTGAG
GACTCCGGACCTTACAAACACATATCGCCGGGAGATACAAGGGTTCTAGTAGAGAATGGA
ATCTTACTGAGTGGCATCATATGTAAGAAGTCACTTGGTACCTCATCAGGTTCACTGTGC
CACGTTGTTGCTCTGGAAAAAAATGCTGATGTTTGCCGGGAGTTTTACAGCAATATACAG
ACATGCGTAAACAATTGGTTGATGATAGAAGGTCATTCAATCGGTATCGGAGATACAATT
GCAGATGCTCAGACTTACCAGGATATTCAAACTCAAATTAGGAAAGCCAAGCAAGAAGTC
ATAGAGGTTATAGAGAAAGCACATAAGGAGGATTTACAACCGACACCTGGTAACACATTG
AGACAAACGTTTGAAAATCAAGTCAACAGAATTCTAAACGATGCTCGTGACAAAACTGGT
TCGTCAGCTCAAAAAAGTTTGTCTGATTTCAACAACTTTAAAGCCATGGTGGTGGCTGGA
TCTAAGGGTTCAAAAATTAACATTTCTCAGGTCATTGCTGTTGTGGGGCAACAGAACGTT
GAAGGAAAACGAATTCCTTTTGGTTTCCGTCATAGAACACTTCCACATTTTATTAAGGAT
GATTACGGTCCAGAAGCTCGTGGTTTTGTTGAGAATTCATATCTTGCTGGTTTGACTCCA
ACAGAGTTTTATTTTCACGCTATGGGAGGAAGGGAAGGTCTCATTGACACTGCTGTCAAA
ACTGCAGAAACTGGATACATCCAGAGAAGATTAGTTAAAGCCATGGAAGCGGTGATGGTG
AGATACGACGGCACTATACGTCAGTGTAATGACTTCATGATACAACTGTGTTATGGGGAA
GATGGGTTGGCTGGCGAGAAAGTGGAATTTCAAAACCTCGCAACTCTTAAACCAAGTCAC
GCCACTTTTAATAAGAAATTCCGATTTGATTATTCCAAAGAGCGTTTCATGCGGCGTTGC
ATGAATGAAGACGTTGTAAGAATGATACAAACTGATGTCACCATTCAACAAGAATTAGAA
ACTGAGTTCGATCAATTACAACAAGATCGTGAAAATATTCGAGCCATTTTCCCAACTGGT
GATAGCAAGGTTGTCTTGCCTGTGAACCTGAGTCGTTTAATCTGGAACGCACAAAAGATT
TTCCACATTGATCTTCGTAGCCCGTCCAACCTCAACCCACAGCGTGTTATTGAGGGTGTG
CGAGATTTAAGTAAGAAGTTGGTGATTGTGTGTGGTGAGGATAGATTGAGTAAAGAAGCA
CAAAGCAACGCTACTCTGCTATTCAATGTTCATCTAAGGTCCACCCTATGTTCACGGAGA
GTAGCCGATGAATTCCGTCTCTCAGCTGAAGCGTTTGAATGGATCCTCGGTGAAATTGAG
ACCAAATTCCAACAAGCGCAAGTCCACCCTGGTGAAATGGTGGGAGCTCTTGCTGCCCAA
TCCCTTGGTGAACCAGCCACACAGATGACCCTCAACACTTTCCATTACGCTGGTGTGTCA
GCGAAGAATGTGACGCTTGGTGTGCCGAGGTTAAAGGAATTGATTAACGTCTCAAAGAAA
CCCAGGACCCCCTCACTCACAATATACTTGATTGGCCCAGCTACTCGGGATGCACAGAGG
TGTAAGGATGTTTTATGTCGATTGGAGCACGCCACGCTACGTAAAGTGACAGCCAACACT
GCAATTTATTACGACCCTGACCCCATGAATACAGTCATTCAAGAAGATCAAGAATTCGTG
AACGTTTATTATGAGATGCCAGATTTTGACGTCACAAGAATTTCTTCATGGCTGCTTAGG
ATTGAACTTGACAGAAAGAGAATGACAGATAAGAAACTGAGCATGGAACAAATTGCTGAA
AAGATCAGCGCAGGGTTTGGAGACGACTTGAATTGCATTTTCAACGACGACAATGCTGAG
AAACTCGTGCTTCGTATTCGGATCATGAACAGTGAGGAACAAAAAGCAGATGAAGACACA
GAAGAACAAACTGATAAAATGGAAGATGATGTCTTCCTGCGTTATATTGAAGCTAATATG
TTGACTGACATGACATTGCAGGGTATTCCACAAATTGCAAAAGTGTACATGCATTTACCT
AAAGAAGAAAACAAGAAGAGAATTGTGATAACAAAAGAAGGAGAGTTTAATGCAGTCCAG
GATTGGATCCTGGAGACAGATGGGACAGCTTTGATGAGGATTTTATCTGAGAGAGATATT
GATCCTGTCCGAACTACTTCTAATGATATTTGTGAGATCTTCTCTGTTCTCGGAATAGAA
GCGGTGAGAAAAGCTTTGGAGCGGGAAATCAACCACGTCATATCTTTCGATGGTTCATAT
GTCAATTATCGTCATTTGGCGTTACTATGCGAGGTTATGACATCAAAGGGACACTTGATG
GCGATCACGAGGCACGGTATTAATCGTCAAGAGACAGGGGCGCTGATGAGGTGTTCGTTT
GAAGAGACGGTCGATATTTTAATGGAGGCTGCTTCTTCAGCAGAAACTGACCACATGGAT
GGCGTGTCTGAAAACATTATGCTTGGCCAGTTAGTACCGGGTGGAACCGGTTGTTTCGGG
TTATTACTGGATGCTGAGAAGTGTAAATATGCAATGGAGATACCGACTAATATTGGGGTT
GTTGGAGCCTCTTATTCCCCCGCCAGCCCCAGTTACTCTCCAACTTCCCCCAGTTACAGC
CCTGCATCACCCAGCTATTCCCCATCAAACCCAAAATACTCCCCAGCAAGTCCATCTTAC
AGCCCAGCATCACCAGAATACAGCCCATCGAGTCCAAAATATACACCATCATCACCATCT
TACTCCCCTGCCTCCCCATCCTACAGTCCATCCTCACCAAACTATTCTCCATCCAGTCCC
AAGTACTCACCATCAAGTCCATCTTATTCACCCGCAAGCCCATCATACTCACCTACAAGT
CCATCTTACTCCCCTTCGAGCCCTGGCTATTCCCCCTCCTCCCCAAGTTATTCCCCATCT
AGCCCAGGAGCATCAAGTCCTGCATACAGCGGCCAAGCTGGCTACTCTCCAAGCAGCCCC
TCTTACTCACCAACAAGTCCTTCATATTGCCCGGCCAGTCCCCGGTACACTCCAACTAGC
CCAACATACACCCCGGGAGGGGACCTCTCTCCGGCTTCACCCAGCTATAGCCCTACTTCC
CCAGGTGCAGAGAGCCCAGCTAGTCCATCATACAGCCCAACAAGCCCTTCTTACAGTCCT
GCAAGTCCAATGTATTCTCCTACCAGCCCTGGTTATAGTCCTTTAAGTCCAGGTTACAGT
CCTGCATCGCCAAGTTATACACCAAGCACCCCAGGTGGTGGGCAACACCATGGTCAAGCT
AAAGACAGCGACGAAGACTAACTACAACAATCTATGCACATTATGTTGCTAGTGAAGTGG
CCACGGTTCCAAAAACACTGCAGAAAAAAAACCCATAGAACAAAAAAACAGTGCAAAAAA
AGACTTTCTAACGCGTGTTGTATTCTTTTCACCGAGTGTATATTCGTTATTTACTAATTT
CTGTTAATATTCATTCAAATTCCCGCTTTCTGCCAAGTATAATTTTGTACAAGATACAGA
ATTGAGCTCTTCGTAAGTATAATTTTGTACAAGATACAGAATTGAGCTCTTCGTGTTTCG
CAGTGGGTAGGAACAACTGATATGTGTACAACATTTTCAGAAGTGGCTCTAATGTTTTAA
CTTTAAAGTGAAAAATAAATGAAAATGAACACAA
| Pfam |
RNA_pol_Rpb1_1 (IPR007080) - T[4-341] 1.7E-106 |
| SMART |
RNA_pol_N (IPR006592) - T[232-536] 1.1E-197 |
| Pfam |
RNA_pol_asu (IPR000722) - T[343-508] 4.6E-75 |
| Pfam |
RNA_pol_Rpb1_3 (IPR007066) - T[512-679] 6.4E-49 |
| Gene3D |
Rpb1_funnel_sf (IPR038120) - T[674-819] 3.6E-54 |
| Pfam |
RNA_pol_Rpb1_4 (IPR007083) - T[705-810] 1.3E-36 |
| Pfam |
RNA_pol_Rpb1_5 (IPR007081) - T[817-1414] 1.3E-98 |
| Pfam |
RNA_pol_Rpb1_6 (IPR007075) - T[883-1066] 3.1E-68 |
| Pfam |
RNA_pol_Rpb1_7 (IPR007073) - T[1151-1287] 2.0E-55 |
| Gene3D |
RNA_pol_Rpb1_7_sf (IPR038593) - T[1151-1288] 3.4E-56 |
| ProSitePatterns |
RNA_pol_II_repeat_euk (IPR000684) - T[1492-1498] . - T[1562-1568] . - T[1576-1582] . - T[1622-1628] . - T[1636-1642] . - T[1671-1677] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPA1_HUMAN | 32.523 % | 333 | 9.77E-93 |
| RPC1_HUMAN | 37.045 % | 569 | 5.62E-176 |
| RPB1_HUMAN | 75.453 % | 2558 | 0 |