Aniseed - Transcript Card

Transcript 'Cisavi.CG.ENS81.R17....' >
Transcript 'KH2012:KH.C7.55.v3.A...'

Transcript Model

Transcript Id

KH2012:KH.C7.55.v3.A.nonSL5-1

Possible name(s)

MRPL4

Gene model

KH2012:KH.C7.55

Location

KhC7 [257,091 / 259,060]

Sequences

Amino acid sequence

Length: 339

>KH.C7.55.v3.A.nonSL5-1
SLPRKLKFKMKLCCRKLISPARFILQSIQSRNSHVNREDFIPPNLVMAKVNPLLHNVTIQ
EVPKISDKIPVFRHCVEKLPKNKNAISVWLDNLLHARPQYNSVVQLHPVLFDTHPRMDIL
HSVVRWQQEYREVDYSWSRTRAEIGRGKKKPWPQKGTGRARHGSSNSPLWVKGGISQGPR
GPRASFYELNPNTLLDGLLIALSIKHIQNDLIIIESAQISQDMPDFDEYLENRNLSEASM
LLVHAENENISYLEHLAEDSKLLNIMPLYGLNVCSILKHDKLVLSRCILDELEHKVLWHK
TRYPWLGSPHNFYIDMPGQDNKQSVDTNTSEPIGETGHM

Nucleotide sequence

Length: 1,289

>KH2012:KH.C7.55.v3.A.nonSL5-1
GATAGCACTAGAAACTCAAATGTCTAAAGTTGAGGCATGGTTTAGTAAGGAAGCTGGAAT
AAGTATATATACACAATACACCTCGACCGGTGGCATCATAAACACACAAAGAAGTACGTC
ATAATCCCTGCCAAGGAAACTTAAATTCAAAATGAAGCTTTGTTGTAGGAAACTCATTTC
TCCTGCAAGATTTATTTTACAAAGTATTCAAAGTCGAAATTCTCATGTTAATAGAGAAGA
TTTCATCCCACCAAATTTGGTGATGGCTAAAGTTAATCCACTTCTACACAACGTAACCAT
TCAAGAAGTTCCGAAGATATCAGATAAAATTCCTGTTTTTCGTCACTGTGTTGAGAAATT
GCCAAAGAATAAAAATGCTATTTCTGTGTGGCTGGACAACCTGCTTCACGCCAGACCACA
ATATAATTCTGTTGTTCAACTACATCCAGTTCTATTTGATACACATCCTCGAATGGATAT
CTTGCATTCAGTGGTTCGATGGCAGCAGGAATACAGAGAGGTTGACTATTCATGGTCCCG
TACAAGAGCAGAAATTGGACGAGGTAAAAAGAAGCCATGGCCACAAAAAGGAACTGGAAG
GGCAAGACATGGAAGTAGCAATTCACCACTTTGGGTAAAAGGTGGTATTAGTCAAGGACC
TAGAGGACCAAGGGCTTCATTTTATGAACTAAATCCAAATACGTTACTAGATGGCTTATT
AATTGCTTTATCAATCAAACACATTCAAAATGATTTGATCATCATTGAATCAGCTCAAAT
TTCACAGGATATGCCCGACTTTGATGAATATTTAGAAAATCGAAATTTATCTGAGGCTTC
AATGTTGCTCGTCCATGCTGAGAATGAAAATATTTCTTATCTTGAACACTTAGCTGAAGA
TTCTAAACTTTTAAATATAATGCCTTTGTATGGTTTAAATGTTTGCAGTATTTTAAAACA
TGACAAACTTGTCCTATCCAGATGCATACTAGATGAACTTGAGCACAAGGTACTGTGGCA
TAAAACACGTTATCCTTGGCTTGGGTCTCCACATAACTTTTATATTGACATGCCTGGACA
AGATAATAAACAAAGTGTTGATACTAATACTTCAGAGCCTATAGGCGAGACGGGTCATAT
GTGATTGCCATAATTTAATTTAAAGCGAAAAATACAAGTTCATCCGCTTAAGTATGAGTT
ATATTTATGCATCCATAGGGTCAAGTTACTGTAATTGTATTGTAACGGACACCAAAGTGA
GCTATAAGACTCAAAGTTGAAGCTCACCC

InterProScan

PANTHER	Ribosomal_uL4/L1e (IPR013005) - T[27-317] 3.3E-67
Gene3D	Ribosomal_L4_dom_sf (IPR023574) - T[69-317] 9.5E-56
SUPERFAMILY	Ribosomal_L4_dom_sf (IPR023574) - T[95-295] 1.16E-46
Pfam	Ribosomal_L4/L1e (IPR002136) - T[104-294] 2.1E-35

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RM04_HUMAN	39.241 %	178	8.86E-54