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TRANSCRIPT CARD

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  1. Transcript 'Moocci.CG.ELv1_2.S29...'
  2. EST 'AHC0AAA223YH18_RM1'
  3. Transcript 'Harore.CG.MTP2014.S1...'
  4. Transcript 'KH2012:KH.C3.697.v4....'
  5. Transcript 'KH2012:KH.C7.633.v1....'

Transcript Model

Transcript Id

KH2012:KH.C7.633.v1.A.nonSL2-1

Possible name(s)

COL1A1; COL1A2; COL2A1

Location

KhC7 [1,095,563 / 1,117,160]

Sequences

Amino acid sequence

Length: 1,410

>KH.C7.633.v1.A.nonSL2-1
CYRRTSRNTSAEELCTMGVYGTMKILTAIGIKGQKGEPGEIPDNVGEGLPGPAGIPGIPG
LQGIDGRPGARGPKGDRGTPGRDGNPGTPGIPGPPGPPGAGMDGDLARSYSAGGKGPSPV
IAGPPGVMGPRGSPGVSGSPGPQGFQGPPGETGEPGSSGPPGHAGPSGIPGKPGKDGKDG
RPGKTGPIGTPGPQGPRGFSGTPGNPGPKGHKGHAGLNGLKGDSGLAGADGEQGAVGEAG
PPGISGPRGLPGDRGRPGAAGEPGARGSDGLPGQSGPPGPTGIGGPPGFPGAPGSKGEGG
PTGARGPEGPQGSRGEAGTPGSPGPAGLAGSPGIDGASGSKGSTGAPGIAGPPGIPGPRG
SPGTQGNIGSAGPKGNTGNPGVQGFRGDQGPKGSMGSTGPQGLQGAQGEEGKRGSRGEAG
PPGPIGSTGERGAPGNRGFPGQDGLSGPKGSTGRRGRPGVAGPKGSVGDVGRSGEPGLPG
ARGLTGKPGADGRQGKQGQPGVSGEDGRAGPAGAPGQKGPPGQIGFPGPKGVSGEPGRGG
EKGIAGPPGSRGLAGKDGEIGPQGPPGPNGVAGDRGEAGQPGPAGFQGLPGPPGPNGEPG
KSGETGVPGEVGPSGEPGPRGERGFPGEVGTTGPQGLTGPRGAAGIPGSDGQKGQTGPLG
PPGEPGPQGVQGGTGRRGPPGLSGGKGDRGDLGPPGIEGEPGKEGLRGLTGPIGPPGAQG
PNGDKGDLGNTGPEGATGPRGSPGERGEPGPDGAPGYPGSPGAEGQSGKKGESGSRGVKG
DSGAPGLQGPAGGAGPIGPPGVAGRRGTRGAIGVPGPAGFPGPAGRPGAPGDQGSSGQQG
NPGEPGKPGSKGASGDEGPPGPQGESGLQGLPGQPGEPGSAGEPGPQGGPGASGLRGNPG
SSGNPGLPGPSGPTGDRGPSGLQGEEGKQGRPGLPGDRGPPGDIGPVGPSGPSGESGPEG
MPGPEGAPGRDGSVGIKGEIGERGHTGPPGPSGIPGPPGLHGIEGKSGPRGESGPPGSQG
PPGPEGGRGQAGPQGARGDTGKTGDMGPRGIKGHRGYTGLQGLPGKLGPTGDPGMPGTAG
PQGLRGTTGPRGPAGNDGSPGAPGPIGATGPRGSSGDDGMRGPSGPAGPPGPPGPPGPGI
DMAAFRMPVISSFKGPNVAADQPVSDVGRDEEMMVVLKELTNSVENIKAPRGVSKKTAAR
SCMDIYLAEQQQNIVAKNGIRWIDPNGGCTADGIEVYCNFDTMETCVYPTNRHIENGTHY
TGESRHVYYGEEMATGSTVRYDPSDEDRVPHADYTSQLTFLRLLSRQVKQHVTFYCRNMV
AYYDAAADNKAQALKLRGFGDAEFTAEGDPSTTYRVLHDGCTGRPSTWGKTDIEFTTGFV
GRMPITDIAPFDIGGADQQFGAEFGPACFH

Nucleotide sequence

Length: 5,346

>KH2012:KH.C7.633.v1.A.nonSL2-1
GTGCTACCGACGAACGAGTCGGAATACATCGGCGGAGGAGCTGTGCACGATGGGTGTGTA
CGGCACTATGAAGATACTTACCGCAATTGGTATTAAAGGACAAAAGGGAGAACCTGGAGA
AATTCCAGACAATGTTGGGGAAGGACTTCCAGGACCCGCAGGAATACCAGGTATTCCCGG
ACTACAAGGAATTGACGGACGGCCAGGAGCAAGAGGTCCAAAGGGAGACAGAGGTACACC
CGGACGTGATGGTAACCCCGGAACCCCTGGTATTCCCGGACCACCAGGACCCCCAGGTGC
AGGAATGGACGGTGATCTTGCCCGAAGTTATTCAGCTGGAGGCAAGGGACCAAGTCCAGT
TATAGCTGGACCACCTGGAGTTATGGGACCAAGAGGATCACCAGGAGTTTCTGGTTCACC
AGGACCCCAAGGATTCCAAGGACCCCCAGGAGAGACTGGTGAACCTGGATCTAGTGGACC
ACCCGGACATGCAGGACCTTCTGGAATTCCAGGCAAACCAGGAAAAGATGGCAAGGATGG
CAGACCAGGGAAAACTGGTCCAATTGGTACTCCTGGACCACAGGGACCGAGAGGATTTTC
AGGCACACCTGGAAACCCAGGACCCAAAGGACATAAGGGTCATGCTGGTCTTAATGGTTT
GAAAGGAGATAGTGGTCTTGCTGGAGCAGATGGTGAACAAGGAGCAGTAGGAGAAGCTGG
ACCTCCTGGAATCAGTGGGCCGAGAGGTCTACCTGGTGACAGAGGAAGGCCAGGAGCTGC
TGGAGAACCAGGTGCTCGTGGATCTGATGGTCTTCCTGGACAATCTGGACCACCAGGACC
AACTGGAATTGGTGGACCTCCAGGATTCCCAGGTGCGCCAGGATCTAAGGGTGAAGGTGG
ACCTACTGGTGCAAGAGGACCTGAAGGACCCCAGGGTTCAAGGGGTGAAGCAGGAACACC
AGGCTCCCCTGGACCAGCTGGGCTTGCGGGCTCTCCTGGTATTGATGGAGCATCAGGTTC
CAAGGGATCAACTGGTGCACCCGGCATTGCTGGACCACCAGGCATTCCCGGCCCAAGAGG
CTCACCTGGTACACAAGGTAATATCGGATCTGCTGGACCTAAAGGAAACACTGGAAACCC
TGGTGTTCAAGGCTTCAGAGGTGATCAAGGACCAAAAGGAAGCATGGGTAGTACTGGACC
ACAAGGTCTGCAAGGAGCACAAGGAGAAGAAGGAAAGAGGGGTTCCAGAGGAGAAGCTGG
ACCTCCTGGACCAATTGGTTCAACTGGAGAGAGGGGTGCACCTGGTAACAGAGGATTCCC
TGGACAAGATGGTCTATCTGGTCCCAAGGGAAGCACTGGCAGAAGAGGACGACCTGGTGT
TGCAGGACCTAAAGGATCAGTTGGTGACGTTGGCAGATCTGGTGAACCTGGTCTTCCTGG
TGCAAGGGGTCTTACAGGCAAGCCTGGTGCTGATGGTAGACAAGGAAAGCAAGGTCAACC
CGGTGTTAGTGGTGAAGACGGTCGCGCTGGACCTGCTGGTGCTCCAGGACAGAAGGGACC
ACCGGGACAAATTGGTTTCCCAGGACCTAAGGGTGTATCTGGAGAGCCAGGTCGAGGTGG
TGAGAAAGGTATTGCAGGTCCCCCAGGATCACGTGGGTTGGCTGGTAAAGATGGAGAGAT
CGGACCACAGGGTCCACCAGGACCAAATGGTGTTGCTGGAGACAGAGGAGAAGCAGGACA
ACCTGGTCCAGCTGGGTTCCAAGGTCTTCCAGGTCCTCCAGGACCTAACGGAGAGCCAGG
AAAGTCTGGAGAAACTGGTGTTCCAGGAGAGGTTGGTCCATCAGGAGAACCAGGACCCCG
AGGTGAACGAGGTTTCCCTGGTGAAGTTGGAACCACTGGACCACAAGGTCTTACTGGTCC
ACGCGGCGCTGCTGGTATTCCTGGCTCTGATGGACAAAAGGGTCAAACCGGACCATTAGG
TCCACCAGGTGAGCCTGGTCCTCAAGGTGTACAAGGTGGAACTGGCCGACGTGGTCCTCC
TGGTTTATCCGGAGGTAAGGGAGACCGAGGAGATCTTGGTCCACCAGGTATTGAGGGAGA
ACCTGGAAAAGAAGGACTTCGGGGTTTGACTGGACCTATTGGACCACCAGGAGCTCAAGG
ACCAAATGGTGACAAGGGAGACCTTGGTAACACTGGACCTGAAGGAGCAACTGGACCAAG
AGGATCTCCTGGTGAAAGAGGAGAACCAGGACCTGATGGGGCACCAGGTTATCCAGGATC
ACCTGGAGCTGAAGGACAATCAGGAAAGAAGGGAGAATCTGGTTCCAGAGGTGTCAAGGG
TGACTCAGGTGCTCCTGGATTACAAGGACCTGCTGGTGGTGCCGGACCAATTGGACCACC
TGGAGTTGCTGGACGAAGAGGTACCCGCGGTGCTATTGGTGTTCCGGGACCTGCAGGTTT
TCCAGGACCAGCTGGACGACCAGGTGCACCAGGAGACCAGGGATCATCTGGACAGCAAGG
TAACCCAGGAGAGCCAGGTAAACCTGGATCCAAGGGAGCTTCTGGTGACGAGGGACCTCC
AGGACCACAAGGAGAATCAGGACTCCAAGGATTGCCAGGTCAACCTGGTGAGCCAGGATC
TGCTGGAGAACCCGGACCACAGGGTGGCCCAGGAGCATCAGGACTTAGAGGAAACCCAGG
ATCTTCTGGAAACCCAGGTCTGCCTGGACCATCTGGACCAACTGGAGACAGGGGACCTTC
TGGATTACAGGGAGAAGAGGGCAAACAAGGACGACCAGGTCTTCCAGGAGACCGAGGTCC
TCCTGGCGACATCGGCCCCGTTGGACCATCAGGACCCTCTGGAGAGAGTGGTCCTGAGGG
TATGCCTGGACCTGAAGGTGCACCTGGACGAGATGGCTCAGTAGGAATTAAGGGTGAAAT
TGGTGAGCGTGGGCACACTGGACCCCCAGGTCCATCTGGCATTCCAGGACCCCCAGGTCT
TCATGGTATCGAAGGAAAGAGTGGTCCACGTGGAGAATCAGGACCACCAGGATCCCAAGG
ACCTCCAGGCCCAGAGGGCGGCAGAGGACAAGCTGGACCACAAGGTGCACGAGGTGACAC
GGGAAAAACTGGCGATATGGGACCAAGGGGTATCAAGGGTCACCGCGGTTACACTGGTCT
ACAAGGTCTTCCAGGAAAACTCGGACCAACAGGAGACCCAGGAATGCCTGGAACTGCCGG
ACCACAAGGACTTAGAGGAACAACCGGTCCAAGAGGACCTGCTGGCAACGATGGATCCCC
AGGAGCACCTGGTCCCATTGGCGCTACTGGTCCACGTGGTTCGTCTGGTGACGATGGTAT
GAGGGGACCTTCTGGACCTGCTGGGCCACCTGGACCTCCTGGACCACCAGGGCCTGGAAT
CGACATGGCTGCCTTCAGAATGCCAGTCATTAGTTCATTCAAGGGACCAAATGTTGCTGC
AGATCAACCAGTCAGTGATGTAGGCAGAGATGAAGAGATGATGGTTGTATTGAAAGAACT
TACCAACTCCGTTGAGAACATCAAAGCACCACGTGGTGTGAGCAAGAAGACAGCAGCTCG
CTCCTGCATGGACATTTACCTCGCAGAACAACAACAAAACATTGTTGCTAAGAATGGCAT
CAGATGGATTGATCCTAATGGCGGCTGCACTGCTGATGGTATTGAGGTTTACTGTAACTT
TGACACCATGGAGACATGCGTCTATCCAACCAACAGACACATCGAGAACGGAACCCATTA
CACCGGGGAGAGCCGGCATGTGTACTACGGGGAAGAAATGGCCACTGGCAGCACAGTAAG
ATACGACCCATCTGACGAGGACAGAGTTCCACACGCAGATTACACATCGCAGCTCACTTT
CTTGCGTCTGCTCAGTCGTCAAGTCAAACAGCACGTTACCTTCTACTGTCGTAACATGGT
GGCTTATTATGATGCTGCTGCGGACAACAAAGCGCAAGCTCTGAAACTTCGTGGTTTTGG
AGATGCTGAGTTTACTGCTGAGGGAGATCCAAGCACAACATACAGGGTTCTCCATGATGG
TTGCACTGGTCGCCCATCAACCTGGGGCAAGACAGACATCGAGTTCACCACTGGATTCGT
TGGACGCATGCCAATCACTGATATTGCACCGTTCGATATCGGAGGTGCCGACCAGCAGTT
TGGTGCTGAATTTGGCCCAGCCTGCTTCCATTAAGCGGCGGTTAAATCCCCGCTGTACCC
GAAAACGAACTGGGAATGTGACAACGACGACGACGAACTGCCCGCTCTTAAAACGGATTT
GACGACACGTAGGTGGGAGTTCGCTCCCGCGTTAAAAAAACTATTTTTATCTGACGACAA
CGACGACGACGGCTCTGTAATGTAACATTGTACTTGTGTTTTTATGTCACGCATTTGTAG
CACCGATAACGCCGCCTTTTTTGCGTTTTTTCAGCCTAGTTAAATTGCGTTTTTTTTATG
TATAACGAACATCCAAACTTACTCAGCATCCTGAAAAAATCCTCGCTCATTTTCGTTTCG
CCCATTCAGCATATCTTTCCACACGGCAGCGGCGTTTTCCACCTTTGCTGTTTTTTTCGT
TATTATTATCATGTAGCTTGCGCGACAGTATTATACCGTCACCGCTTTTTTTTTTGTCTA
GCCTGACTGTACCTGCATTACTAAATCTTGCTTCGAACGCCTCATAGCCGTTCTCACAAC
GGCTTTTACCATTCAGCATACCCCGCCGCCCAGCAGTGACGTATTACGTGTTACCTGAGC
GTCACTTTTTTACAAAACGTCTTAACCCACGGCCACGTCTGGTGTGCAGTCTACCTGTGG
TCGCATGTTTCCTGTGTATAATCCCACTCCAGTCATAACCGGCTCGTGCCGCCTATCGTA
CCTTGCCCGCCTGTTGGTCAGTGTTTTACGGAAAGCTTGGGCGTTCGCCTTTGGTGGAAG
CCGTTACGGTTGACCGACCATCGTGTCACGTGAGCAGCTCGTAGTTGGAAGACGTCGTCC
AACATTCGAAGTCGCCACCCGTTTCGGAAGCCGGCAGTTCCCATGATAGAGTTCGGTTAA
AATTCCAACTACGTTTACCAGCACTAAATGTAGTTGGAGTTTTCTTCGTTCGGGAAAATA
ACTGCAGCCAATCCGCGTCCGCGTCCTAGCCCACGTGATTCCCGTTCACCAATCAGAGCA
CGGCTTGGAAAATATGTCCCGTGAAGACACCAAACCACCCGTATTCGCCTGATACTTTGT
GTTTTTCTATTACTTTGCTTTTATATCCTGCTATAAACGCGTGCACAATAAAACGACTTA
CGTCAA

InterProScan

Pfam
Collagen (IPR008160) - T[48-100] 6.5E-7 - T[123-181] 6.7E-9 - T[171-223] 2.1E-6 - T[588-638] 4.4E-7 - T[611-666] 9.0E-8 - T[1080-1138] 6.7E-8
SMART
Fib_collagen_C (IPR000885) - T[1170-1410] 1.8E-83
Pfam
Fib_collagen_C (IPR000885) - T[1170-1409] 2.6E-90
ProSiteProfiles
Fib_collagen_C (IPR000885) - T[1171-1410] 72.337
ProDom
Fib_collagen_C (IPR000885) - T[1298-1409] 8.0E-63

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CO1A2_HUMAN 51.591 % 688 0
CO2A1_HUMAN 58.075 % 765 0
CO1A1_HUMAN 55.832 % 633 0