- Transcript 'KH2012:KH.C3.697.v4....' >
- Transcript 'KH2012:KH.C7.633.v1....'
Transcript Model
Transcript Id
KH2012:KH.C7.633.v1.A.nonSL2-1
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
KhC7 [1,095,563 / 1,117,160]
Amino acid sequence
Length: 1,410
>KH.C7.633.v1.A.nonSL2-1
CYRRTSRNTSAEELCTMGVYGTMKILTAIGIKGQKGEPGEIPDNVGEGLPGPAGIPGIPG
LQGIDGRPGARGPKGDRGTPGRDGNPGTPGIPGPPGPPGAGMDGDLARSYSAGGKGPSPV
IAGPPGVMGPRGSPGVSGSPGPQGFQGPPGETGEPGSSGPPGHAGPSGIPGKPGKDGKDG
RPGKTGPIGTPGPQGPRGFSGTPGNPGPKGHKGHAGLNGLKGDSGLAGADGEQGAVGEAG
PPGISGPRGLPGDRGRPGAAGEPGARGSDGLPGQSGPPGPTGIGGPPGFPGAPGSKGEGG
PTGARGPEGPQGSRGEAGTPGSPGPAGLAGSPGIDGASGSKGSTGAPGIAGPPGIPGPRG
SPGTQGNIGSAGPKGNTGNPGVQGFRGDQGPKGSMGSTGPQGLQGAQGEEGKRGSRGEAG
PPGPIGSTGERGAPGNRGFPGQDGLSGPKGSTGRRGRPGVAGPKGSVGDVGRSGEPGLPG
ARGLTGKPGADGRQGKQGQPGVSGEDGRAGPAGAPGQKGPPGQIGFPGPKGVSGEPGRGG
EKGIAGPPGSRGLAGKDGEIGPQGPPGPNGVAGDRGEAGQPGPAGFQGLPGPPGPNGEPG
KSGETGVPGEVGPSGEPGPRGERGFPGEVGTTGPQGLTGPRGAAGIPGSDGQKGQTGPLG
PPGEPGPQGVQGGTGRRGPPGLSGGKGDRGDLGPPGIEGEPGKEGLRGLTGPIGPPGAQG
PNGDKGDLGNTGPEGATGPRGSPGERGEPGPDGAPGYPGSPGAEGQSGKKGESGSRGVKG
DSGAPGLQGPAGGAGPIGPPGVAGRRGTRGAIGVPGPAGFPGPAGRPGAPGDQGSSGQQG
NPGEPGKPGSKGASGDEGPPGPQGESGLQGLPGQPGEPGSAGEPGPQGGPGASGLRGNPG
SSGNPGLPGPSGPTGDRGPSGLQGEEGKQGRPGLPGDRGPPGDIGPVGPSGPSGESGPEG
MPGPEGAPGRDGSVGIKGEIGERGHTGPPGPSGIPGPPGLHGIEGKSGPRGESGPPGSQG
PPGPEGGRGQAGPQGARGDTGKTGDMGPRGIKGHRGYTGLQGLPGKLGPTGDPGMPGTAG
PQGLRGTTGPRGPAGNDGSPGAPGPIGATGPRGSSGDDGMRGPSGPAGPPGPPGPPGPGI
DMAAFRMPVISSFKGPNVAADQPVSDVGRDEEMMVVLKELTNSVENIKAPRGVSKKTAAR
SCMDIYLAEQQQNIVAKNGIRWIDPNGGCTADGIEVYCNFDTMETCVYPTNRHIENGTHY
TGESRHVYYGEEMATGSTVRYDPSDEDRVPHADYTSQLTFLRLLSRQVKQHVTFYCRNMV
AYYDAAADNKAQALKLRGFGDAEFTAEGDPSTTYRVLHDGCTGRPSTWGKTDIEFTTGFV
GRMPITDIAPFDIGGADQQFGAEFGPACFH
Nucleotide sequence
Length: 5,346
>KH2012:KH.C7.633.v1.A.nonSL2-1
GTGCTACCGACGAACGAGTCGGAATACATCGGCGGAGGAGCTGTGCACGATGGGTGTGTA
CGGCACTATGAAGATACTTACCGCAATTGGTATTAAAGGACAAAAGGGAGAACCTGGAGA
AATTCCAGACAATGTTGGGGAAGGACTTCCAGGACCCGCAGGAATACCAGGTATTCCCGG
ACTACAAGGAATTGACGGACGGCCAGGAGCAAGAGGTCCAAAGGGAGACAGAGGTACACC
CGGACGTGATGGTAACCCCGGAACCCCTGGTATTCCCGGACCACCAGGACCCCCAGGTGC
AGGAATGGACGGTGATCTTGCCCGAAGTTATTCAGCTGGAGGCAAGGGACCAAGTCCAGT
TATAGCTGGACCACCTGGAGTTATGGGACCAAGAGGATCACCAGGAGTTTCTGGTTCACC
AGGACCCCAAGGATTCCAAGGACCCCCAGGAGAGACTGGTGAACCTGGATCTAGTGGACC
ACCCGGACATGCAGGACCTTCTGGAATTCCAGGCAAACCAGGAAAAGATGGCAAGGATGG
CAGACCAGGGAAAACTGGTCCAATTGGTACTCCTGGACCACAGGGACCGAGAGGATTTTC
AGGCACACCTGGAAACCCAGGACCCAAAGGACATAAGGGTCATGCTGGTCTTAATGGTTT
GAAAGGAGATAGTGGTCTTGCTGGAGCAGATGGTGAACAAGGAGCAGTAGGAGAAGCTGG
ACCTCCTGGAATCAGTGGGCCGAGAGGTCTACCTGGTGACAGAGGAAGGCCAGGAGCTGC
TGGAGAACCAGGTGCTCGTGGATCTGATGGTCTTCCTGGACAATCTGGACCACCAGGACC
AACTGGAATTGGTGGACCTCCAGGATTCCCAGGTGCGCCAGGATCTAAGGGTGAAGGTGG
ACCTACTGGTGCAAGAGGACCTGAAGGACCCCAGGGTTCAAGGGGTGAAGCAGGAACACC
AGGCTCCCCTGGACCAGCTGGGCTTGCGGGCTCTCCTGGTATTGATGGAGCATCAGGTTC
CAAGGGATCAACTGGTGCACCCGGCATTGCTGGACCACCAGGCATTCCCGGCCCAAGAGG
CTCACCTGGTACACAAGGTAATATCGGATCTGCTGGACCTAAAGGAAACACTGGAAACCC
TGGTGTTCAAGGCTTCAGAGGTGATCAAGGACCAAAAGGAAGCATGGGTAGTACTGGACC
ACAAGGTCTGCAAGGAGCACAAGGAGAAGAAGGAAAGAGGGGTTCCAGAGGAGAAGCTGG
ACCTCCTGGACCAATTGGTTCAACTGGAGAGAGGGGTGCACCTGGTAACAGAGGATTCCC
TGGACAAGATGGTCTATCTGGTCCCAAGGGAAGCACTGGCAGAAGAGGACGACCTGGTGT
TGCAGGACCTAAAGGATCAGTTGGTGACGTTGGCAGATCTGGTGAACCTGGTCTTCCTGG
TGCAAGGGGTCTTACAGGCAAGCCTGGTGCTGATGGTAGACAAGGAAAGCAAGGTCAACC
CGGTGTTAGTGGTGAAGACGGTCGCGCTGGACCTGCTGGTGCTCCAGGACAGAAGGGACC
ACCGGGACAAATTGGTTTCCCAGGACCTAAGGGTGTATCTGGAGAGCCAGGTCGAGGTGG
TGAGAAAGGTATTGCAGGTCCCCCAGGATCACGTGGGTTGGCTGGTAAAGATGGAGAGAT
CGGACCACAGGGTCCACCAGGACCAAATGGTGTTGCTGGAGACAGAGGAGAAGCAGGACA
ACCTGGTCCAGCTGGGTTCCAAGGTCTTCCAGGTCCTCCAGGACCTAACGGAGAGCCAGG
AAAGTCTGGAGAAACTGGTGTTCCAGGAGAGGTTGGTCCATCAGGAGAACCAGGACCCCG
AGGTGAACGAGGTTTCCCTGGTGAAGTTGGAACCACTGGACCACAAGGTCTTACTGGTCC
ACGCGGCGCTGCTGGTATTCCTGGCTCTGATGGACAAAAGGGTCAAACCGGACCATTAGG
TCCACCAGGTGAGCCTGGTCCTCAAGGTGTACAAGGTGGAACTGGCCGACGTGGTCCTCC
TGGTTTATCCGGAGGTAAGGGAGACCGAGGAGATCTTGGTCCACCAGGTATTGAGGGAGA
ACCTGGAAAAGAAGGACTTCGGGGTTTGACTGGACCTATTGGACCACCAGGAGCTCAAGG
ACCAAATGGTGACAAGGGAGACCTTGGTAACACTGGACCTGAAGGAGCAACTGGACCAAG
AGGATCTCCTGGTGAAAGAGGAGAACCAGGACCTGATGGGGCACCAGGTTATCCAGGATC
ACCTGGAGCTGAAGGACAATCAGGAAAGAAGGGAGAATCTGGTTCCAGAGGTGTCAAGGG
TGACTCAGGTGCTCCTGGATTACAAGGACCTGCTGGTGGTGCCGGACCAATTGGACCACC
TGGAGTTGCTGGACGAAGAGGTACCCGCGGTGCTATTGGTGTTCCGGGACCTGCAGGTTT
TCCAGGACCAGCTGGACGACCAGGTGCACCAGGAGACCAGGGATCATCTGGACAGCAAGG
TAACCCAGGAGAGCCAGGTAAACCTGGATCCAAGGGAGCTTCTGGTGACGAGGGACCTCC
AGGACCACAAGGAGAATCAGGACTCCAAGGATTGCCAGGTCAACCTGGTGAGCCAGGATC
TGCTGGAGAACCCGGACCACAGGGTGGCCCAGGAGCATCAGGACTTAGAGGAAACCCAGG
ATCTTCTGGAAACCCAGGTCTGCCTGGACCATCTGGACCAACTGGAGACAGGGGACCTTC
TGGATTACAGGGAGAAGAGGGCAAACAAGGACGACCAGGTCTTCCAGGAGACCGAGGTCC
TCCTGGCGACATCGGCCCCGTTGGACCATCAGGACCCTCTGGAGAGAGTGGTCCTGAGGG
TATGCCTGGACCTGAAGGTGCACCTGGACGAGATGGCTCAGTAGGAATTAAGGGTGAAAT
TGGTGAGCGTGGGCACACTGGACCCCCAGGTCCATCTGGCATTCCAGGACCCCCAGGTCT
TCATGGTATCGAAGGAAAGAGTGGTCCACGTGGAGAATCAGGACCACCAGGATCCCAAGG
ACCTCCAGGCCCAGAGGGCGGCAGAGGACAAGCTGGACCACAAGGTGCACGAGGTGACAC
GGGAAAAACTGGCGATATGGGACCAAGGGGTATCAAGGGTCACCGCGGTTACACTGGTCT
ACAAGGTCTTCCAGGAAAACTCGGACCAACAGGAGACCCAGGAATGCCTGGAACTGCCGG
ACCACAAGGACTTAGAGGAACAACCGGTCCAAGAGGACCTGCTGGCAACGATGGATCCCC
AGGAGCACCTGGTCCCATTGGCGCTACTGGTCCACGTGGTTCGTCTGGTGACGATGGTAT
GAGGGGACCTTCTGGACCTGCTGGGCCACCTGGACCTCCTGGACCACCAGGGCCTGGAAT
CGACATGGCTGCCTTCAGAATGCCAGTCATTAGTTCATTCAAGGGACCAAATGTTGCTGC
AGATCAACCAGTCAGTGATGTAGGCAGAGATGAAGAGATGATGGTTGTATTGAAAGAACT
TACCAACTCCGTTGAGAACATCAAAGCACCACGTGGTGTGAGCAAGAAGACAGCAGCTCG
CTCCTGCATGGACATTTACCTCGCAGAACAACAACAAAACATTGTTGCTAAGAATGGCAT
CAGATGGATTGATCCTAATGGCGGCTGCACTGCTGATGGTATTGAGGTTTACTGTAACTT
TGACACCATGGAGACATGCGTCTATCCAACCAACAGACACATCGAGAACGGAACCCATTA
CACCGGGGAGAGCCGGCATGTGTACTACGGGGAAGAAATGGCCACTGGCAGCACAGTAAG
ATACGACCCATCTGACGAGGACAGAGTTCCACACGCAGATTACACATCGCAGCTCACTTT
CTTGCGTCTGCTCAGTCGTCAAGTCAAACAGCACGTTACCTTCTACTGTCGTAACATGGT
GGCTTATTATGATGCTGCTGCGGACAACAAAGCGCAAGCTCTGAAACTTCGTGGTTTTGG
AGATGCTGAGTTTACTGCTGAGGGAGATCCAAGCACAACATACAGGGTTCTCCATGATGG
TTGCACTGGTCGCCCATCAACCTGGGGCAAGACAGACATCGAGTTCACCACTGGATTCGT
TGGACGCATGCCAATCACTGATATTGCACCGTTCGATATCGGAGGTGCCGACCAGCAGTT
TGGTGCTGAATTTGGCCCAGCCTGCTTCCATTAAGCGGCGGTTAAATCCCCGCTGTACCC
GAAAACGAACTGGGAATGTGACAACGACGACGACGAACTGCCCGCTCTTAAAACGGATTT
GACGACACGTAGGTGGGAGTTCGCTCCCGCGTTAAAAAAACTATTTTTATCTGACGACAA
CGACGACGACGGCTCTGTAATGTAACATTGTACTTGTGTTTTTATGTCACGCATTTGTAG
CACCGATAACGCCGCCTTTTTTGCGTTTTTTCAGCCTAGTTAAATTGCGTTTTTTTTATG
TATAACGAACATCCAAACTTACTCAGCATCCTGAAAAAATCCTCGCTCATTTTCGTTTCG
CCCATTCAGCATATCTTTCCACACGGCAGCGGCGTTTTCCACCTTTGCTGTTTTTTTCGT
TATTATTATCATGTAGCTTGCGCGACAGTATTATACCGTCACCGCTTTTTTTTTTGTCTA
GCCTGACTGTACCTGCATTACTAAATCTTGCTTCGAACGCCTCATAGCCGTTCTCACAAC
GGCTTTTACCATTCAGCATACCCCGCCGCCCAGCAGTGACGTATTACGTGTTACCTGAGC
GTCACTTTTTTACAAAACGTCTTAACCCACGGCCACGTCTGGTGTGCAGTCTACCTGTGG
TCGCATGTTTCCTGTGTATAATCCCACTCCAGTCATAACCGGCTCGTGCCGCCTATCGTA
CCTTGCCCGCCTGTTGGTCAGTGTTTTACGGAAAGCTTGGGCGTTCGCCTTTGGTGGAAG
CCGTTACGGTTGACCGACCATCGTGTCACGTGAGCAGCTCGTAGTTGGAAGACGTCGTCC
AACATTCGAAGTCGCCACCCGTTTCGGAAGCCGGCAGTTCCCATGATAGAGTTCGGTTAA
AATTCCAACTACGTTTACCAGCACTAAATGTAGTTGGAGTTTTCTTCGTTCGGGAAAATA
ACTGCAGCCAATCCGCGTCCGCGTCCTAGCCCACGTGATTCCCGTTCACCAATCAGAGCA
CGGCTTGGAAAATATGTCCCGTGAAGACACCAAACCACCCGTATTCGCCTGATACTTTGT
GTTTTTCTATTACTTTGCTTTTATATCCTGCTATAAACGCGTGCACAATAAAACGACTTA
CGTCAA
| Pfam |
Collagen (IPR008160) - T[48-100] 6.5E-7 - T[123-181] 6.7E-9 - T[171-223] 2.1E-6 - T[588-638] 4.4E-7 - T[611-666] 9.0E-8 - T[1080-1138] 6.7E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1170-1410] 1.8E-83 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1170-1409] 2.6E-90 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1171-1410] 72.337 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1298-1409] 8.0E-63 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO1A2_HUMAN | 51.591 % | 688 | 0 |
| CO2A1_HUMAN | 58.075 % | 765 | 0 |
| CO1A1_HUMAN | 55.832 % | 633 | 0 |