Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C7.675.v1.A.nonSL2-1

Possible name(s)

GNL2; GNL3L; LSG1

Gene model

KH2012:KH.C7.675

Location

KhC7 [2,900,727 / 2,903,937]

Sequences

Amino acid sequence

Length: 549

>KH.C7.675.v1.A.nonSL2-1
MIVFPLYLDMGRKNARAPGLGQSLIKNRFGKTQTGHRHAAELSAEHDAAQLNLQSVTELS
SLDDFLATAELAGTEFTAERLNIHFVNNDTKGIISNDQQERIEAAQLEYQHLLGIPRRPP
WTKQTTKEELEKLETESFLAWRKKLTVIQDNDDLIITPYEKNLDFWRQLWRVIERSDVIV
QIVDARDPLLFRCLDLETYVTESNESKQNILLVNKADLLSSKQRSEWRSHFEQLGVNVVF
WSAVLENEKLDENFDHSQLEALDVDDLFTREQLIDFLKSLIDKPNKVVGMVGYPNVGKSS
TVNTLMGVKKAAVSATPGRTKHFQTLHIDSELCLCDCPGLVFPSFVSNKAEMVLSGILPI
DQMRDHVAPVNLLGHRIPRRVIEVTYGFNISKPKEGENPDRVPTAAEILSAHALSRGFMT
THGQPDNSRSARVILKDYVNGKLLCSVPPPGVSGEEYKAWTISKVEKVVNCMPDVVNDDM
ATVVARIQRLNKKDVGPTISKVESDFFAPKEVRVFTKGAKQDLASGKGSKKHHNNKKKEK
TRRIRATEY

Nucleotide sequence

Length: 1,812

>KH2012:KH.C7.675.v1.A.nonSL2-1
AATGTAAACATTTTCTATTTAACGTCACAGATAAATGATTGTATTTCCTCTGTACTTGGA
CATGGGGAGAAAAAACGCGAGAGCGCCAGGGCTTGGACAGAGCTTAATTAAAAACAGATT
TGGTAAAACTCAGACTGGACATCGACATGCAGCCGAATTATCCGCAGAACACGACGCGGC
GCAACTCAATCTTCAATCAGTTACCGAACTCAGTTCTTTGGACGATTTTCTCGCCACAGC
AGAACTTGCTGGGACCGAATTCACAGCTGAAAGACTAAACATTCATTTTGTAAATAATGA
CACAAAAGGAATCATATCCAATGACCAACAAGAGAGGATTGAAGCTGCTCAACTTGAATA
CCAACATCTACTTGGTATTCCACGACGACCCCCATGGACCAAACAAACTACAAAGGAAGA
ACTTGAGAAATTGGAAACGGAATCTTTCTTGGCTTGGAGAAAAAAACTGACTGTTATTCA
AGATAATGATGACCTGATCATCACTCCTTATGAGAAGAACTTAGACTTCTGGAGGCAACT
GTGGAGAGTCATTGAAAGAAGTGATGTCATCGTGCAAATTGTGGATGCAAGAGACCCACT
TTTGTTTCGATGCTTGGACCTGGAGACTTATGTGACAGAAAGCAATGAATCGAAACAGAA
CATATTGCTTGTCAACAAGGCTGATTTACTTTCATCAAAGCAACGAAGTGAATGGAGAAG
TCACTTTGAACAATTAGGAGTGAATGTGGTTTTCTGGTCAGCAGTTTTGGAAAATGAAAA
ACTTGACGAGAATTTTGATCATTCACAGTTAGAAGCTCTTGACGTTGACGACCTATTCAC
TCGTGAACAGTTGATTGATTTCTTAAAAAGTTTAATTGATAAACCCAACAAAGTTGTGGG
CATGGTGGGTTACCCTAATGTTGGAAAAAGCTCAACTGTTAACACACTAATGGGGGTAAA
AAAGGCAGCTGTATCTGCAACACCTGGAAGAACAAAACATTTTCAAACTTTACATATTGA
CAGTGAGTTATGTCTGTGCGATTGTCCTGGTCTTGTTTTCCCAAGTTTTGTCTCTAACAA
AGCAGAAATGGTACTCAGTGGCATTCTACCTATCGACCAGATGCGAGACCACGTTGCGCC
TGTAAATTTACTCGGTCATCGAATTCCTCGTAGAGTTATAGAAGTGACGTATGGTTTTAA
CATCTCAAAACCTAAAGAAGGAGAAAATCCTGACCGTGTCCCAACTGCTGCGGAAATTCT
CAGCGCGCATGCTTTATCACGTGGTTTCATGACAACGCACGGACAACCAGACAATTCCCG
TTCTGCGAGGGTTATTTTAAAAGATTATGTTAACGGAAAATTACTGTGTTCTGTTCCACC
CCCTGGAGTGAGTGGCGAAGAATATAAAGCTTGGACCATTTCCAAAGTTGAAAAAGTAGT
GAATTGTATGCCCGATGTAGTAAATGACGACATGGCAACTGTAGTTGCCAGAATTCAACG
TCTGAACAAGAAAGATGTTGGACCAACAATTAGCAAAGTTGAATCGGACTTTTTTGCACC
AAAAGAAGTACGCGTGTTTACAAAAGGTGCTAAACAAGACTTGGCAAGTGGAAAAGGTTC
AAAAAAGCACCACAACAACAAGAAAAAAGAGAAAACACGTCGCATTAGAGCAACTGAATA
TTAGTTTAGTGCAATCATGTGGCTTTGTAAATCTTGTACAGAAATTGGGTCTAGTTTTAT
TTGGCGCAAATATAAATTCAAAACCTTGAATTTTTATCGCCAATAAAAGATTAAGGTTCC
GACATATATTTA

InterProScan

SUPERFAMILY	P-loop_NTPase (IPR027417) - T[164-351] 5.5E-38
ProSiteProfiles	G_CP_dom (IPR030378) - T[166-343] 43.96
Pfam	GTP_binding_domain (IPR006073) - T[288-344] 4.8E-13

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NOG2_HUMAN	30 %	126	1.01E-30
LSG1_HUMAN	47.841 %	273	1.45E-83
GNL3L_HUMAN	27.797 %	118	4.41E-28