Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C8.109.v1.A.nonSL13-1

Possible name(s)

RPL18A

Gene model

KH2012:KH.C8.109

Location

KhC8 [5,232,719 / 5,235,762]

Sequences

Amino acid sequence

Length: 185

>KH.C8.109.v1.A.nonSL13-1
LYPKPSNMKAKGELQEYKVVGRKLPSEAVPNPPLYRMRLFAPNHIAAKSRFWYYISYYKK
IKKNAGEILQCSKRSEPRPGRVKNFGIWLRYDSRSGTHNMYREYRDVKVASAVTACYRDM
GARHRARPGSIQIMRVEEVAANKCKRKHVQQFHDSKIKFPMRRTVLSKKQQNAPRFTTNK
PNLFF

Nucleotide sequence

Length: 644

>KH2012:KH.C8.109.v1.A.nonSL13-1
GTCAAAATTACCCACAATTCAGTGCGTCAACGTGATAATTTCTTTTCTAGCTATATCCCA
AGCCAAGTAACATGAAAGCGAAGGGAGAGCTCCAAGAATACAAGGTTGTTGGGCGTAAAC
TGCCATCCGAGGCAGTCCCCAACCCACCTTTGTACCGAATGCGATTATTTGCTCCAAACC
ACATCGCTGCCAAATCAAGATTCTGGTATTACATTTCTTACTACAAGAAGATTAAGAAGA
ATGCCGGTGAGATATTGCAATGTAGCAAGCGATCCGAACCACGACCTGGTCGTGTCAAGA
ACTTCGGTATTTGGTTGAGATACGATTCTCGCAGTGGAACTCACAACATGTACAGAGAGT
ACCGTGATGTGAAAGTAGCAAGTGCTGTTACCGCTTGTTACCGAGACATGGGTGCTCGCC
ATCGTGCCAGACCTGGCTCCATTCAAATCATGAGAGTGGAAGAAGTGGCTGCTAATAAAT
GCAAGCGAAAGCATGTTCAACAGTTCCATGATTCCAAGATTAAATTCCCCATGCGAAGAA
CTGTATTGAGCAAAAAGCAGCAGAATGCACCGCGTTTCACAACCAACAAACCAAACCTGT
TCTTCTAAGAATTGAGCAGAAATAAAACAACTTTATGAAATTGT

InterProScan

PIRSF	Ribosomal_L18a/L20_eukaryotes (IPR021138) - T[8-185] 5.5E-67
PANTHER	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[8-185] 4.3E-83
Pfam	Ribosomal_L18a//L18Ae/LX (IPR023573) - T[14-137] 2.0E-50
Hamap	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[37-137] 35.463

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL18A_HUMAN	68.539 %	257	1.06E-88