Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C8.109.v1.A.nonSL16-1

Possible name(s)

RPL18A

Gene model

KH2012:KH.C8.109

Location

KhC8 [5,232,722 / 5,235,762]

Sequences

Amino acid sequence

Length: 185

>KH.C8.109.v1.A.nonSL16-1
LYPKPSNMKAKGELQEYKVVGRKLPSEAVPNPPLYRMRLFAPNHIAAKSRFWYYISYYKK
IKKNAGEILQCSKRSEPRPGRVKNFGIWLRYDSRSGTHNMYREYRDVKVASAVTACYRDM
GARHRARPGSIQIMRVEEVAANKCKRKHVQQFHDSKIKFPMRRTVLSKKQQNAPRFTTNK
PNLFF

Nucleotide sequence

Length: 641

>KH2012:KH.C8.109.v1.A.nonSL16-1
AAAATTACCCACAATTCAGTGCGTCAACGTGATAATTTCTTTTCTAGCTATATCCCAAGC
CAAGTAACATGAAAGCGAAGGGAGAGCTCCAAGAATACAAGGTTGTTGGGCGTAAACTGC
CATCCGAGGCAGTCCCCAACCCACCTTTGTACCGAATGCGATTATTTGCTCCAAACCACA
TCGCTGCCAAATCAAGATTCTGGTATTACATTTCTTACTACAAGAAGATTAAGAAGAATG
CCGGTGAGATATTGCAATGTAGCAAGCGATCCGAACCACGACCTGGTCGTGTCAAGAACT
TCGGTATTTGGTTGAGATACGATTCTCGCAGTGGAACTCACAACATGTACAGAGAGTACC
GTGATGTGAAAGTAGCAAGTGCTGTTACCGCTTGTTACCGAGACATGGGTGCTCGCCATC
GTGCCAGACCTGGCTCCATTCAAATCATGAGAGTGGAAGAAGTGGCTGCTAATAAATGCA
AGCGAAAGCATGTTCAACAGTTCCATGATTCCAAGATTAAATTCCCCATGCGAAGAACTG
TATTGAGCAAAAAGCAGCAGAATGCACCGCGTTTCACAACCAACAAACCAAACCTGTTCT
TCTAAGAATTGAGCAGAAATAAAACAACTTTATGAAATTGT

InterProScan

PIRSF	Ribosomal_L18a/L20_eukaryotes (IPR021138) - T[8-185] 5.5E-67
PANTHER	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[8-185] 4.3E-83
Pfam	Ribosomal_L18a//L18Ae/LX (IPR023573) - T[14-137] 2.0E-50
Hamap	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[37-137] 35.463

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL18A_HUMAN	68.539 %	257	1.06E-88