Aniseed - Transcript Card

Transcript 'KH2012:KH.C8.109.v2....'

Transcript Model

Transcript Id

KH2012:KH.C8.109.v2.A.ND3-1

Possible name(s)

RPL18A

Gene model

KH2012:KH.C8.109

Location

KhC8 [5,233,667 / 5,235,762]

Sequences

Amino acid sequence

Length: 172

>KH.C8.109.v2.A.ND3-1
LQEYKVVGRKLPSEAVPNPPLYRMRLFAPNHIAAKSRFWYYISYYKKIKKNAGEILQCSK
RSEPRPGRVKNFGIWLRYDSRSGTHNMYREYRDVKVASAVTACYRDMGARHRARPGSIQI
MRVEEVAANKCKRKHVQQFHDSKIKFPMRRTVLSKKQQNAPRFTTNKPNLFF

Nucleotide sequence

Length: 610

>KH2012:KH.C8.109.v2.A.ND3-1
CACTTTAGAAAATGTTTAAAATGTGCATCTTATACTAACCCCAATGTAATTTTAGCTCCA
AGAATACAAGGTTGTTGGGCGTAAACTGCCATCCGAGGCAGTCCCCAACCCACCTTTGTA
CCGAATGCGATTATTTGCTCCAAACCACATCGCTGCCAAATCAAGATTCTGGTATTACAT
TTCTTACTACAAGAAGATTAAGAAGAATGCCGGTGAGATATTGCAATGTAGCAAGCGATC
CGAACCACGACCTGGTCGTGTCAAGAACTTCGGTATTTGGTTGAGATACGATTCTCGCAG
TGGAACTCACAACATGTACAGAGAGTACCGTGATGTGAAAGTAGCAAGTGCTGTTACCGC
TTGTTACCGAGACATGGGTGCTCGCCATCGTGCCAGACCTGGCTCCATTCAAATCATGAG
AGTGGAAGAAGTGGCTGCTAATAAATGCAAGCGAAAGCATGTTCAACAGTTCCATGATTC
CAAGATTAAATTCCCCATGCGAAGAACTGTATTGAGCAAAAAGCAGCAGAATGCACCGCG
TTTCACAACCAACAAACCAAACCTGTTCTTCTAAGAATTGAGCAGAAATAAAACAACTTT
ATGAAATTGT

InterProScan

PANTHER	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[1-172] 8.3E-81
Pfam	Ribosomal_L18a//L18Ae/LX (IPR023573) - T[1-124] 1.6E-50
PIRSF	Ribosomal_L18a/L20_eukaryotes (IPR021138) - T[1-172] 9.6E-67
Hamap	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[24-124] 35.463

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL18A_HUMAN	68.605 %	249	7.56E-86