- Clone 'cien132126' >
- Transcript 'KH2012:KH.L4.55.v1.A...' >
- Transcript 'KH2012:KH.L9.8.v5.B....' >
- Transcript 'KH2012:KH.C8.192.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.192.v1.A.nonSL5-2
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
KhC8 [898,187 / 899,899]
Amino acid sequence
Length: 332
>KH.C8.192.v1.A.nonSL5-2
SERGEFGGFGSVSGKIEIEIKINHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPS
KPDPCGDCNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDVGATPREGRILDA
QHIYTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSAACNKPSHVVDAHTAEVNCL
SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD
RRLNVWDLSKIGEEQSAEDAEDGPPELLFVHGGHTAKISDFSWNPNEPWVSCSVSEDNIM
QVWQMAENIYNDEEQDTAGSSTPAAELEQNAT
Nucleotide sequence
Length: 1,289
>KH2012:KH.C8.192.v1.A.nonSL5-2
AGCGAGCGTGGGGAGTTTGGCGGCTTTGGTTCTGTCAGTGGAAAGATTGAAATTGAAATT
AAAATCAACCATGAGGGAGAAGTAAACAGGGCCAGGTTCATGCCTCAGAATCCATGCATC
ATTGGAACAAAGACTCCATCCAGCGATGTGTTGGTGTTTGACTACACAAAGCATCCTAGC
AAACCAGATCCATGCGGAGACTGCAATCCTGATTTGCGTCTGCGTGGTCACCAGAAGGAA
GGGTATGGCCTTTCTTGGAATCCAAATCTAAGCGGCCATTTGTTAAGTGCATCTGATGAT
CATACCATTTGTTTATGGGATGTTGGTGCCACACCACGTGAAGGGAGAATTCTGGATGCT
CAACATATTTACACAGGTCATACAGCTGTAGTTGAAGACGTATCTTGGCATTTATTGCAT
GAAAGTTTGTTCGGTTCAGTTGCTGATGACCAAAAATTGATGATTTGGGATACACGTTCT
GCTGCTTGTAACAAACCAAGTCATGTTGTTGATGCACACACCGCTGAAGTAAACTGCCTT
TCCTTCAACCCATACAGTGAGTTCATTCTAGCAACAGGTTCTGCCGACAAAACGGTTGCT
TTGTGGGATTTACGGAACCTCAAACTTAAGTTACATTCGTTTGAGTCTCACAAAGATGAA
ATTTTCCAGGTACAATGGTCTCCACATAATGAAACCATCTTGGCTTCAAGTGGAACTGAT
CGGAGGTTAAATGTCTGGGATCTGAGTAAGATCGGGGAAGAGCAGAGTGCTGAAGATGCA
GAAGATGGTCCTCCTGAACTCCTTTTCGTACATGGAGGACACACAGCAAAGATTTCAGAC
TTTTCTTGGAATCCCAACGAGCCTTGGGTGTCTTGCTCTGTTTCTGAGGATAACATTATG
CAAGTATGGCAGATGGCTGAAAACATCTACAACGATGAAGAACAAGATACAGCCGGGTCT
TCTACTCCCGCTGCAGAGTTAGAGCAAAATGCTACCTGAAATAATCATCTAAAAAACAAA
ACAGTTCAAAAACGGTCTGAAATAGATTTGTAATCTTGGTTTCTTTTGTATTGGTTAATA
ATATGTGTCCCAAGGTTATATATTGAGGTAAATTTATTTCAGACTGGTTGTAATACCAAA
TACGTATACATGATACCTTTTTATAATTGGAAAATCATTTTGTTGTGATAAGTATAAATG
GAAATTTTTCGATGAATTCAGTCGTATTTTTTACTTGTAAGGGTTTACCATTGGTTGTAC
ATATGTAATAAACTATTAAGCATACAACT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-325] 2.8E-126 |
| SMART |
WD40_repeat (IPR001680) - T[13-54] 34.0 - T[67-107] 3.3E-6 - T[117-157] 0.072 - T[163-203] 1.6E-8 - T[207-247] 7.0E-7 - T[264-304] 0.016 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[18-310] 3.0E-49 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[74-108] 11.945 - T[124-166] 9.071 - T[170-206] 13.85 - T[214-256] 12.948 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[74-313] 34.328 |
| Pfam |
WD40_repeat (IPR001680) - T[74-107] 0.03 - T[121-157] 0.008 - T[165-203] 2.4E-7 - T[211-247] 2.5E-4 - T[268-303] 0.0014 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[94-108] . - T[190-204] . - T[234-248] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[94-108] 7.7E-9 - T[190-204] 7.7E-9 - T[234-248] 7.7E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 29.085 % | 121 | 3.27E-31 |
| RBBP7_HUMAN | 88.438 % | 603 | 0 |
| RBBP4_HUMAN | 90.184 % | 616 | 0 |