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TRANSCRIPT CARD

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  1. Clone 'cima878324' > 
  2. Region 'REG00001509' > 
  3. Transcript 'KH2012:KH.S215.4.v1....' > 
  4. Region 'REG00000691' > 
  5. Transcript 'KH2012:KH.C8.248.v1....'

Transcript Model

Transcript Id

KH2012:KH.C8.248.v1.A.nonSL11-1

Possible name(s)

COL19A1; COL21A1; COL24A1

Gene model

KH2012:KH.C8.248

Location

KhC8 [5,996,820 / 6,011,805]

Sequences

Amino acid sequence

Length: 674

>KH.C8.248.v1.A.nonSL11-1
RDYSRRVWSAKMFMNKRRVILLVVALLLVTADARKRKRKKNRKSRANDLITRSRRQGEPD
PPADCPVCPAGPAGQPGPPGPPGENGIQGDPGPDGFAGIDGLDGERGPPGPQGFQGVSGQ
KGEPGEIGAPGTEGLIGPAGIPGSLGLPGPAGPQGPPGDVNTVEGPPGRPGAPGPRGPPG
LPGPSGGATAGERVVSNGEVGFVGPPGYPGPKGHKGYKGEPGPDGKQGPKGDAGPEGEQG
PAGPGGESGPRGARGYPGEDGRKGEVGPAGVPGEMGAPGEQGLQGAEGPPGVPGERGAKG
GTGDRGPLGNPGGPGLPGEPGLPGRNGADGIPGTPGERGRPGESGPKGTEGAIGAPGNSG
EQGIQGQPGERGFPGIKGHKGASGMTGAKGEPGNDGNEGPEGNPGPQGTAGTPGERGSPG
TPGENGQRGPGGPPGIIGPEGPRGQSGPRGPQGESGPRGVPGLQGPPGRMPSDQKILEVC
RRVLRDEMRGMMAATRPRGIITGGAPGRPGPVGPPGQQGPQGQSGLPGKTGMQGAQGVPG
MPGRTGPKGFGGDKGDRGAPGIGSVGLPGPAGPPGPQGSPGFGKDGRNGERGEPGLPGPT
GYIGPQGSVGPPGYCDPSTCLMGQVRGIQQPKGPNGQKGPDAADSPLGSEPPAGTNRRRA
ARTRHRPEMNDIQF

Nucleotide sequence

Length: 2,547

>KH2012:KH.C8.248.v1.A.nonSL11-1
AAGAGACTACTCACGGCGCGTTTGGAGCGCCAAGATGTTCATGAACAAGAGGCGAGTGAT
CCTCTTGGTCGTGGCGCTTCTGCTTGTAACGGCGGATGCGAGGAAGCGAAAGAGAAAGAA
GAACCGGAAGAGCAGAGCAAATGATCTGATCACTCGGAGCAGAAGACAAGGAGAGCCGGA
CCCACCAGCGGATTGCCCGGTTTGTCCAGCGGGACCTGCAGGACAACCAGGACCCCCAGG
ACCACCCGGTGAGAACGGAATCCAAGGAGATCCTGGACCAGATGGTTTCGCTGGAATTGA
TGGACTTGATGGTGAAAGAGGACCACCAGGACCCCAGGGGTTTCAGGGAGTCTCTGGTCA
AAAGGGAGAACCAGGAGAAATTGGTGCACCTGGAACAGAGGGACTCATTGGACCTGCAGG
GATACCGGGAAGCCTTGGGTTACCTGGTCCAGCTGGCCCACAAGGACCTCCAGGTGATGT
GAACACCGTTGAGGGACCTCCTGGACGACCAGGTGCTCCTGGACCAAGGGGACCACCAGG
ACTTCCCGGACCATCTGGAGGCGCTACGGCTGGTGAAAGAGTGGTTTCAAATGGTGAAGT
TGGTTTTGTTGGACCACCAGGTTATCCCGGACCCAAGGGTCATAAGGGATACAAAGGTGA
ACCCGGTCCTGATGGAAAACAAGGTCCAAAGGGTGATGCCGGTCCTGAGGGAGAACAAGG
ACCAGCTGGTCCTGGCGGTGAATCTGGTCCACGTGGGGCACGAGGTTACCCGGGAGAAGA
TGGGAGAAAGGGAGAAGTAGGCCCTGCAGGAGTACCTGGAGAAATGGGTGCACCTGGTGA
ACAAGGTTTACAGGGAGCTGAAGGTCCTCCTGGAGTCCCAGGAGAGAGGGGAGCCAAGGG
AGGAACTGGGGATCGAGGTCCTCTTGGAAACCCTGGAGGACCCGGACTTCCTGGAGAACC
GGGTCTACCCGGTAGAAATGGAGCTGATGGTATCCCAGGAACCCCAGGAGAACGGGGACG
ACCAGGAGAGTCAGGACCAAAAGGAACAGAAGGTGCCATAGGAGCTCCTGGTAATTCAGG
AGAACAAGGTATTCAGGGTCAACCTGGTGAACGTGGATTCCCTGGAATCAAAGGACACAA
AGGAGCATCTGGTATGACTGGCGCCAAGGGAGAACCTGGTAATGATGGAAATGAGGGACC
AGAAGGCAACCCTGGACCACAGGGAACTGCTGGAACTCCAGGAGAACGTGGATCACCAGG
AACACCGGGTGAAAATGGGCAACGTGGGCCAGGTGGACCACCGGGCATCATTGGACCAGA
AGGACCCAGGGGCCAATCTGGGCCACGAGGACCACAAGGAGAATCTGGACCAAGAGGCGT
CCCTGGATTACAAGGCCCTCCTGGGCGCATGCCAAGTGACCAAAAGATTCTGGAAGTTTG
CCGTAGGGTGCTTCGAGATGAGATGAGAGGTATGATGGCAGCAACCAGACCCCGAGGTAT
CATCACTGGTGGAGCTCCTGGAAGACCTGGACCTGTTGGACCACCTGGACAGCAAGGACC
ACAAGGACAATCTGGTCTTCCTGGTAAAACTGGAATGCAAGGTGCACAGGGTGTTCCTGG
AATGCCTGGACGTACTGGACCCAAAGGATTTGGTGGTGATAAAGGTGACAGAGGAGCGCC
AGGAATTGGCAGCGTTGGTCTTCCAGGACCTGCTGGTCCTCCAGGACCCCAAGGATCACC
AGGGTTTGGTAAAGATGGTCGTAACGGAGAACGTGGTGAACCCGGCTTACCTGGACCCAC
AGGTTACATTGGGCCACAGGGTTCTGTTGGTCCTCCTGGTTACTGCGACCCATCTACTTG
CTTGATGGGTCAAGTCCGTGGCATTCAACAACCTAAAGGTCCAAATGGCCAGAAAGGTCC
TGATGCAGCGGACAGCCCATTGGGCTCAGAACCACCTGCGGGCACAAACCGTCGCCGTGC
TGCACGTACCCGCCACCGACCCGAGATGAATGATATTCAGTTTTAACTGAAACTAAAAAC
TACTTTGATTACCGCGCGATCGCACCGTGTGGAGATATGACTCAAAATTTGTAATGTAAC
CAATTTTATCTGCGTGCGTTATATTTTTCCATCACCGTGCTACAGTATATTGTTGCATCA
TATTAGCCGTCGTCATGTTGTCGTCACTGCTTGTTGTCAGTTTGTTTTCCGAAGCGATTT
TACATTTTATTACATTTTCACGCCTAAAAAGTGTCATGATTTACTGAGATGGCTGCGTTT
GTACAAGAGATTGGAACTTTTTCATATAGTAGGATTTTGAAAGACACCTTTGGCGTACAA
TATCCAAATATCCGGATCGTGTTTCAAATAACTAACAACGCTTTATGGGTGTTGTAAGGA
TACGAATTTGCAATTTTTGTTTACTACTAAACGGATGAGAAAATACAATGAAAAAGTGTC
CCATTTCCCCCCACCCTACTATACAACATTTCACTAAAACTAAAATATCTATGTTGTCCA
GTGTGGTTTGGACATTAGTTATTACAA

InterProScan

Pfam
Collagen (IPR008160) - T[71-125] 1.9E-9 - T[411-469] 1.1E-7 - T[504-561] 2.7E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COOA1_HUMAN 40.625 % 182 3.68E-48
CO9A1_HUMAN 40.32 % 176 2.03E-46
CO4A6_HUMAN 37.778 % 170 4.3E-44