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- Transcript 'KH2012:KH.C8.248.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.248.v1.A.nonSL12-1
Possible name(s)
COL19A1; COL21A1; COL24A1
Gene model
Location
KhC8 [5,996,820 / 6,011,782]
Amino acid sequence
Length: 666
>KH.C8.248.v1.A.nonSL12-1
SAKMFMNKRRVILLVVALLLVTADARKRKRKKNRKSRANDLITRSRRQGEPDPPADCPVC
PAGPAGQPGPPGPPGENGIQGDPGPDGFAGIDGLDGERGPPGPQGFQGVSGQKGEPGEIG
APGTEGLIGPAGIPGSLGLPGPAGPQGPPGDVNTVEGPPGRPGAPGPRGPPGLPGPSGGA
TAGERVVSNGEVGFVGPPGYPGPKGHKGYKGEPGPDGKQGPKGDAGPEGEQGPAGPGGES
GPRGARGYPGEDGRKGEVGPAGVPGEMGAPGEQGLQGAEGPPGVPGERGAKGGTGDRGPL
GNPGGPGLPGEPGLPGRNGADGIPGTPGERGRPGESGPKGTEGAIGAPGNSGEQGIQGQP
GERGFPGIKGHKGASGMTGAKGEPGNDGNEGPEGNPGPQGTAGTPGERGSPGTPGENGQR
GPGGPPGIIGPEGPRGQSGPRGPQGESGPRGVPGLQGPPGRMPSDQKILEVCRRVLRDEM
RGMMAATRPRGIITGGAPGRPGPVGPPGQQGPQGQSGLPGKTGMQGAQGVPGMPGRTGPK
GFGGDKGDRGAPGIGSVGLPGPAGPPGPQGSPGFGKDGRNGERGEPGLPGPTGYIGPQGS
VGPPGYCDPSTCLMGQVRGIQQPKGPNGQKGPDAADSPLGSEPPAGTNRRRAARTRHRPE
MNDIQF
Nucleotide sequence
Length: 2,524
>KH2012:KH.C8.248.v1.A.nonSL12-1
GGAGCGCCAAGATGTTCATGAACAAGAGGCGAGTGATCCTCTTGGTCGTGGCGCTTCTGC
TTGTAACGGCGGATGCGAGGAAGCGAAAGAGAAAGAAGAACCGGAAGAGCAGAGCAAATG
ATCTGATCACTCGGAGCAGAAGACAAGGAGAGCCGGACCCACCAGCGGATTGCCCGGTTT
GTCCAGCGGGACCTGCAGGACAACCAGGACCCCCAGGACCACCCGGTGAGAACGGAATCC
AAGGAGATCCTGGACCAGATGGTTTCGCTGGAATTGATGGACTTGATGGTGAAAGAGGAC
CACCAGGACCCCAGGGGTTTCAGGGAGTCTCTGGTCAAAAGGGAGAACCAGGAGAAATTG
GTGCACCTGGAACAGAGGGACTCATTGGACCTGCAGGGATACCGGGAAGCCTTGGGTTAC
CTGGTCCAGCTGGCCCACAAGGACCTCCAGGTGATGTGAACACCGTTGAGGGACCTCCTG
GACGACCAGGTGCTCCTGGACCAAGGGGACCACCAGGACTTCCCGGACCATCTGGAGGCG
CTACGGCTGGTGAAAGAGTGGTTTCAAATGGTGAAGTTGGTTTTGTTGGACCACCAGGTT
ATCCCGGACCCAAGGGTCATAAGGGATACAAAGGTGAACCCGGTCCTGATGGAAAACAAG
GTCCAAAGGGTGATGCCGGTCCTGAGGGAGAACAAGGACCAGCTGGTCCTGGCGGTGAAT
CTGGTCCACGTGGGGCACGAGGTTACCCGGGAGAAGATGGGAGAAAGGGAGAAGTAGGCC
CTGCAGGAGTACCTGGAGAAATGGGTGCACCTGGTGAACAAGGTTTACAGGGAGCTGAAG
GTCCTCCTGGAGTCCCAGGAGAGAGGGGAGCCAAGGGAGGAACTGGGGATCGAGGTCCTC
TTGGAAACCCTGGAGGACCCGGACTTCCTGGAGAACCGGGTCTACCCGGTAGAAATGGAG
CTGATGGTATCCCAGGAACCCCAGGAGAACGGGGACGACCAGGAGAGTCAGGACCAAAAG
GAACAGAAGGTGCCATAGGAGCTCCTGGTAATTCAGGAGAACAAGGTATTCAGGGTCAAC
CTGGTGAACGTGGATTCCCTGGAATCAAAGGACACAAAGGAGCATCTGGTATGACTGGCG
CCAAGGGAGAACCTGGTAATGATGGAAATGAGGGACCAGAAGGCAACCCTGGACCACAGG
GAACTGCTGGAACTCCAGGAGAACGTGGATCACCAGGAACACCGGGTGAAAATGGGCAAC
GTGGGCCAGGTGGACCACCGGGCATCATTGGACCAGAAGGACCCAGGGGCCAATCTGGGC
CACGAGGACCACAAGGAGAATCTGGACCAAGAGGCGTCCCTGGATTACAAGGCCCTCCTG
GGCGCATGCCAAGTGACCAAAAGATTCTGGAAGTTTGCCGTAGGGTGCTTCGAGATGAGA
TGAGAGGTATGATGGCAGCAACCAGACCCCGAGGTATCATCACTGGTGGAGCTCCTGGAA
GACCTGGACCTGTTGGACCACCTGGACAGCAAGGACCACAAGGACAATCTGGTCTTCCTG
GTAAAACTGGAATGCAAGGTGCACAGGGTGTTCCTGGAATGCCTGGACGTACTGGACCCA
AAGGATTTGGTGGTGATAAAGGTGACAGAGGAGCGCCAGGAATTGGCAGCGTTGGTCTTC
CAGGACCTGCTGGTCCTCCAGGACCCCAAGGATCACCAGGGTTTGGTAAAGATGGTCGTA
ACGGAGAACGTGGTGAACCCGGCTTACCTGGACCCACAGGTTACATTGGGCCACAGGGTT
CTGTTGGTCCTCCTGGTTACTGCGACCCATCTACTTGCTTGATGGGTCAAGTCCGTGGCA
TTCAACAACCTAAAGGTCCAAATGGCCAGAAAGGTCCTGATGCAGCGGACAGCCCATTGG
GCTCAGAACCACCTGCGGGCACAAACCGTCGCCGTGCTGCACGTACCCGCCACCGACCCG
AGATGAATGATATTCAGTTTTAACTGAAACTAAAAACTACTTTGATTACCGCGCGATCGC
ACCGTGTGGAGATATGACTCAAAATTTGTAATGTAACCAATTTTATCTGCGTGCGTTATA
TTTTTCCATCACCGTGCTACAGTATATTGTTGCATCATATTAGCCGTCGTCATGTTGTCG
TCACTGCTTGTTGTCAGTTTGTTTTCCGAAGCGATTTTACATTTTATTACATTTTCACGC
CTAAAAAGTGTCATGATTTACTGAGATGGCTGCGTTTGTACAAGAGATTGGAACTTTTTC
ATATAGTAGGATTTTGAAAGACACCTTTGGCGTACAATATCCAAATATCCGGATCGTGTT
TCAAATAACTAACAACGCTTTATGGGTGTTGTAAGGATACGAATTTGCAATTTTTGTTTA
CTACTAAACGGATGAGAAAATACAATGAAAAAGTGTCCCATTTCCCCCCACCCTACTATA
CAACATTTCACTAAAACTAAAATATCTATGTTGTCCAGTGTGGTTTGGACATTAGTTATT
ACAA
| Pfam |
Collagen (IPR008160) - T[63-117] 1.8E-9 - T[195-249] 7.9E-8 - T[403-461] 1.1E-7 - T[496-553] 3.7E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 40.625 % | 182 | 3.64E-48 |
| CO9A1_HUMAN | 40.32 % | 176 | 3.04E-46 |
| CO4A6_HUMAN | 37.778 % | 171 | 3.37E-44 |