- Region 'REG00000332' >
- Transcript 'KH2012:KH.C9.176.v7....' >
- Transcript 'KH2012:KH.C8.248.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.248.v1.A.nonSL6-1
Possible name(s)
COL19A1; COL21A1; COL24A1
Gene model
Location
KhC8 [5,996,820 / 6,011,856]
Amino acid sequence
Length: 691
>KH.C8.248.v1.A.nonSL6-1
AVSSAGVGTDTFTRTTPRDYSRRVWSAKMFMNKRRVILLVVALLLVTADARKRKRKKNRK
SRANDLITRSRRQGEPDPPADCPVCPAGPAGQPGPPGPPGENGIQGDPGPDGFAGIDGLD
GERGPPGPQGFQGVSGQKGEPGEIGAPGTEGLIGPAGIPGSLGLPGPAGPQGPPGDVNTV
EGPPGRPGAPGPRGPPGLPGPSGGATAGERVVSNGEVGFVGPPGYPGPKGHKGYKGEPGP
DGKQGPKGDAGPEGEQGPAGPGGESGPRGARGYPGEDGRKGEVGPAGVPGEMGAPGEQGL
QGAEGPPGVPGERGAKGGTGDRGPLGNPGGPGLPGEPGLPGRNGADGIPGTPGERGRPGE
SGPKGTEGAIGAPGNSGEQGIQGQPGERGFPGIKGHKGASGMTGAKGEPGNDGNEGPEGN
PGPQGTAGTPGERGSPGTPGENGQRGPGGPPGIIGPEGPRGQSGPRGPQGESGPRGVPGL
QGPPGRMPSDQKILEVCRRVLRDEMRGMMAATRPRGIITGGAPGRPGPVGPPGQQGPQGQ
SGLPGKTGMQGAQGVPGMPGRTGPKGFGGDKGDRGAPGIGSVGLPGPAGPPGPQGSPGFG
KDGRNGERGEPGLPGPTGYIGPQGSVGPPGYCDPSTCLMGQVRGIQQPKGPNGQKGPDAA
DSPLGSEPPAGTNRRRAARTRHRPEMNDIQF
Nucleotide sequence
Length: 2,598
>KH2012:KH.C8.248.v1.A.nonSL6-1
AGCAGTTAGTAGTGCGGGCGTCGGCACCGACACTTTTACCCGCACCACTCCAAGAGACTA
CTCACGGCGCGTTTGGAGCGCCAAGATGTTCATGAACAAGAGGCGAGTGATCCTCTTGGT
CGTGGCGCTTCTGCTTGTAACGGCGGATGCGAGGAAGCGAAAGAGAAAGAAGAACCGGAA
GAGCAGAGCAAATGATCTGATCACTCGGAGCAGAAGACAAGGAGAGCCGGACCCACCAGC
GGATTGCCCGGTTTGTCCAGCGGGACCTGCAGGACAACCAGGACCCCCAGGACCACCCGG
TGAGAACGGAATCCAAGGAGATCCTGGACCAGATGGTTTCGCTGGAATTGATGGACTTGA
TGGTGAAAGAGGACCACCAGGACCCCAGGGGTTTCAGGGAGTCTCTGGTCAAAAGGGAGA
ACCAGGAGAAATTGGTGCACCTGGAACAGAGGGACTCATTGGACCTGCAGGGATACCGGG
AAGCCTTGGGTTACCTGGTCCAGCTGGCCCACAAGGACCTCCAGGTGATGTGAACACCGT
TGAGGGACCTCCTGGACGACCAGGTGCTCCTGGACCAAGGGGACCACCAGGACTTCCCGG
ACCATCTGGAGGCGCTACGGCTGGTGAAAGAGTGGTTTCAAATGGTGAAGTTGGTTTTGT
TGGACCACCAGGTTATCCCGGACCCAAGGGTCATAAGGGATACAAAGGTGAACCCGGTCC
TGATGGAAAACAAGGTCCAAAGGGTGATGCCGGTCCTGAGGGAGAACAAGGACCAGCTGG
TCCTGGCGGTGAATCTGGTCCACGTGGGGCACGAGGTTACCCGGGAGAAGATGGGAGAAA
GGGAGAAGTAGGCCCTGCAGGAGTACCTGGAGAAATGGGTGCACCTGGTGAACAAGGTTT
ACAGGGAGCTGAAGGTCCTCCTGGAGTCCCAGGAGAGAGGGGAGCCAAGGGAGGAACTGG
GGATCGAGGTCCTCTTGGAAACCCTGGAGGACCCGGACTTCCTGGAGAACCGGGTCTACC
CGGTAGAAATGGAGCTGATGGTATCCCAGGAACCCCAGGAGAACGGGGACGACCAGGAGA
GTCAGGACCAAAAGGAACAGAAGGTGCCATAGGAGCTCCTGGTAATTCAGGAGAACAAGG
TATTCAGGGTCAACCTGGTGAACGTGGATTCCCTGGAATCAAAGGACACAAAGGAGCATC
TGGTATGACTGGCGCCAAGGGAGAACCTGGTAATGATGGAAATGAGGGACCAGAAGGCAA
CCCTGGACCACAGGGAACTGCTGGAACTCCAGGAGAACGTGGATCACCAGGAACACCGGG
TGAAAATGGGCAACGTGGGCCAGGTGGACCACCGGGCATCATTGGACCAGAAGGACCCAG
GGGCCAATCTGGGCCACGAGGACCACAAGGAGAATCTGGACCAAGAGGCGTCCCTGGATT
ACAAGGCCCTCCTGGGCGCATGCCAAGTGACCAAAAGATTCTGGAAGTTTGCCGTAGGGT
GCTTCGAGATGAGATGAGAGGTATGATGGCAGCAACCAGACCCCGAGGTATCATCACTGG
TGGAGCTCCTGGAAGACCTGGACCTGTTGGACCACCTGGACAGCAAGGACCACAAGGACA
ATCTGGTCTTCCTGGTAAAACTGGAATGCAAGGTGCACAGGGTGTTCCTGGAATGCCTGG
ACGTACTGGACCCAAAGGATTTGGTGGTGATAAAGGTGACAGAGGAGCGCCAGGAATTGG
CAGCGTTGGTCTTCCAGGACCTGCTGGTCCTCCAGGACCCCAAGGATCACCAGGGTTTGG
TAAAGATGGTCGTAACGGAGAACGTGGTGAACCCGGCTTACCTGGACCCACAGGTTACAT
TGGGCCACAGGGTTCTGTTGGTCCTCCTGGTTACTGCGACCCATCTACTTGCTTGATGGG
TCAAGTCCGTGGCATTCAACAACCTAAAGGTCCAAATGGCCAGAAAGGTCCTGATGCAGC
GGACAGCCCATTGGGCTCAGAACCACCTGCGGGCACAAACCGTCGCCGTGCTGCACGTAC
CCGCCACCGACCCGAGATGAATGATATTCAGTTTTAACTGAAACTAAAAACTACTTTGAT
TACCGCGCGATCGCACCGTGTGGAGATATGACTCAAAATTTGTAATGTAACCAATTTTAT
CTGCGTGCGTTATATTTTTCCATCACCGTGCTACAGTATATTGTTGCATCATATTAGCCG
TCGTCATGTTGTCGTCACTGCTTGTTGTCAGTTTGTTTTCCGAAGCGATTTTACATTTTA
TTACATTTTCACGCCTAAAAAGTGTCATGATTTACTGAGATGGCTGCGTTTGTACAAGAG
ATTGGAACTTTTTCATATAGTAGGATTTTGAAAGACACCTTTGGCGTACAATATCCAAAT
ATCCGGATCGTGTTTCAAATAACTAACAACGCTTTATGGGTGTTGTAAGGATACGAATTT
GCAATTTTTGTTTACTACTAAACGGATGAGAAAATACAATGAAAAAGTGTCCCATTTCCC
CCCACCCTACTATACAACATTTCACTAAAACTAAAATATCTATGTTGTCCAGTGTGGTTT
GGACATTAGTTATTACAA
| Pfam |
Collagen (IPR008160) - T[88-145] 6.8E-10 - T[383-441] 5.7E-7 - T[404-458] 8.5E-7 - T[428-486] 9.6E-8 - T[521-578] 3.7E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 44.037 % | 171 | 1.41E-44 |
| COOA1_HUMAN | 40.625 % | 186 | 5.58E-49 |
| CO9A1_HUMAN | 40.32 % | 177 | 1.02E-46 |