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TRANSCRIPT CARD

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  1. Clone 'AHC0AAA58YP23' > 
  2. Transcript 'Cisavi.CG.ENS81.R49....' > 
  3. Clone 'cien132675' > 
  4. Clone 'cilv021a17' > 
  5. Transcript 'KH2012:KH.C8.248.v3....'

Transcript Model

Transcript Id

KH2012:KH.C8.248.v3.A.ND2-1

Possible name(s)

COL19A1; COL21A1; COL24A1

Gene model

KH2012:KH.C8.248

Location

KhC8 [5,996,820 / 6,007,537]

Sequences

Amino acid sequence

Length: 557

>KH.C8.248.v3.A.ND2-1
CIFHMCLSCSFTLQGLIGPAGIPGSLGLPGPAGPQGPPGDVNTVEGPPGRPGAPGPRGPP
GLPGPSGGATAGDIGSGADPSGPVYVGPPGYPGPKGHKGYKGEPGPDGKQGPKGDAGPEG
EQGPAGPGGESGPRGARGYPGEDGRKGEVGPAGVPGEMGAPGEQGLQGAEGPPGVPGERG
AKGGTGDRGPLGNPGGPGLPGEPGLPGRNGADGIPGTPGERGRPGESGPKGTEGAIGAPG
NSGEQGIQGQPGERGFPGIKGHKGASGMTGAKGEPGNDGNEGPEGNPGPQGTAGTPGERG
SPGTPGENGQRGPGGPPGIIGPEGPRGQSGPRGPQGESGPRGVPGLQGPPGRMPSDQKIL
EVCRRVLRDEMRGMMAATRPRGIITGGAPGRPGPVGPPGQQGPQGQSGLPGKTGMQGAQG
VPGMPGRTGPKGFGGDKGDRGAPGIGSVGLPGPAGPPGPQGSPGFGKDGRNGERGEPGLP
GPTGYIGPQGSVGPPGYCDPSTCLMGQVRGIQQPKGPNGQKGPDAADSPLGSEPPAGTNR
RRAARTRHRPEMNDIQF

Nucleotide sequence

Length: 2,350

>KH2012:KH.C8.248.v3.A.ND2-1
CACATGTGGCAGTTTGCTGTTTTAGGGCAAATATTCTTTGTATTCATTTGGGAAATAAGT
CATCACTAATTTATAAAGAAATATTTTAATAATCTGAACTGAATTGCTAAATTGCATTAT
CTATAAAATGTGTATTACATAATAATGATTTTTAATGTATTTTCCACATGTGTTTATCAT
GTTCATTTACTTTACAGGGACTCATTGGACCTGCAGGGATACCGGGAAGCCTTGGGTTAC
CTGGTCCAGCTGGCCCACAAGGACCTCCAGGTGATGTGAACACCGTTGAGGGACCTCCTG
GACGACCAGGTGCTCCTGGACCAAGGGGACCACCAGGACTTCCCGGACCATCTGGAGGCG
CTACGGCTGGTGATATTGGTTCAGGGGCTGATCCATCTGGCCCAGTCTATGTTGGACCAC
CAGGTTATCCCGGACCCAAGGGTCATAAGGGATACAAAGGTGAACCCGGTCCTGATGGAA
AACAAGGTCCAAAGGGTGATGCCGGTCCTGAGGGAGAACAAGGACCAGCTGGTCCTGGCG
GTGAATCTGGTCCACGTGGGGCACGAGGTTACCCGGGAGAAGATGGGAGAAAGGGAGAAG
TAGGCCCTGCAGGAGTACCTGGAGAAATGGGTGCACCTGGTGAACAAGGTTTACAGGGAG
CTGAAGGTCCTCCTGGAGTCCCAGGAGAGAGGGGAGCCAAGGGAGGAACTGGGGATCGAG
GTCCTCTTGGAAACCCTGGAGGACCCGGACTTCCTGGAGAACCGGGTCTACCCGGTAGAA
ATGGAGCTGATGGTATCCCAGGAACCCCAGGAGAACGGGGACGACCAGGAGAGTCAGGAC
CAAAAGGAACAGAAGGTGCCATAGGAGCTCCTGGTAATTCAGGAGAACAAGGTATTCAGG
GTCAACCTGGTGAACGTGGATTCCCTGGAATCAAAGGACACAAAGGAGCATCTGGTATGA
CTGGCGCCAAGGGAGAACCTGGTAATGATGGAAATGAGGGACCAGAAGGCAACCCTGGAC
CACAGGGAACTGCTGGAACTCCAGGAGAACGTGGATCACCAGGAACACCGGGTGAAAATG
GGCAACGTGGGCCAGGTGGACCACCGGGCATCATTGGACCAGAAGGACCCAGGGGCCAAT
CTGGGCCACGAGGACCACAAGGAGAATCTGGACCAAGAGGCGTCCCTGGATTACAAGGCC
CTCCTGGGCGCATGCCAAGTGACCAAAAGATTCTGGAAGTTTGCCGTAGGGTGCTTCGAG
ATGAGATGAGAGGTATGATGGCAGCAACCAGACCCCGAGGTATCATCACTGGTGGAGCTC
CTGGAAGACCTGGACCTGTTGGACCACCTGGACAGCAAGGACCACAAGGACAATCTGGTC
TTCCTGGTAAAACTGGAATGCAAGGTGCACAGGGTGTTCCTGGAATGCCTGGACGTACTG
GACCCAAAGGATTTGGTGGTGATAAAGGTGACAGAGGAGCGCCAGGAATTGGCAGCGTTG
GTCTTCCAGGACCTGCTGGTCCTCCAGGACCCCAAGGATCACCAGGGTTTGGTAAAGATG
GTCGTAACGGAGAACGTGGTGAACCCGGCTTACCTGGACCCACAGGTTACATTGGGCCAC
AGGGTTCTGTTGGTCCTCCTGGTTACTGCGACCCATCTACTTGCTTGATGGGTCAAGTCC
GTGGCATTCAACAACCTAAAGGTCCAAATGGCCAGAAAGGTCCTGATGCAGCGGACAGCC
CATTGGGCTCAGAACCACCTGCGGGCACAAACCGTCGCCGTGCTGCACGTACCCGCCACC
GACCCGAGATGAATGATATTCAGTTTTAACTGAAACTAAAAACTACTTTGATTACCGCGC
GATCGCACCGTGTGGAGATATGACTCAAAATTTGTAATGTAACCAATTTTATCTGCGTGC
GTTATATTTTTCCATCACCGTGCTACAGTATATTGTTGCATCATATTAGCCGTCGTCATG
TTGTCGTCACTGCTTGTTGTCAGTTTGTTTTCCGAAGCGATTTTACATTTTATTACATTT
TCACGCCTAAAAAGTGTCATGATTTACTGAGATGGCTGCGTTTGTACAAGAGATTGGAAC
TTTTTCATATAGTAGGATTTTGAAAGACACCTTTGGCGTACAATATCCAAATATCCGGAT
CGTGTTTCAAATAACTAACAACGCTTTATGGGTGTTGTAAGGATACGAATTTGCAATTTT
TGTTTACTACTAAACGGATGAGAAAATACAATGAAAAAGTGTCCCATTTCCCCCCACCCT
ACTATACAACATTTCACTAAAACTAAAATATCTATGTTGTCCAGTGTGGTTTGGACATTA
GTTATTACAA

InterProScan

Pfam
Collagen (IPR008160) - T[87-142] 3.0E-8 - T[294-352] 8.2E-8 - T[387-444] 1.9E-8 - T[446-496] 1.9E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COLA1_HUMAN 40.884 % 160 1.42E-41
COOA1_HUMAN 41.107 % 156 4.54E-40
CO9A1_HUMAN 43.177 % 174 2.78E-46