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  1. Transcript 'KH2012:KH.C8.248.v4....' > 
  2. Transcript 'KH2012:KH.C8.248.v1....' > 
  3. Transcript 'KH2012:KH.C8.248.v4....'

Transcript Model

Transcript Id

KH2012:KH.C8.248.v4.A.ND1-1

Possible name(s)

COL19A1; COL21A1; COL24A1

Gene model

KH2012:KH.C8.248

Location

KhC8 [5,996,820 / 6,014,996]

Sequences

Amino acid sequence

Length: 769

>KH.C8.248.v4.A.ND1-1
RNVYPMGLPSEYSFVSTFRMLGKNTRKQWKLWLVNDGDGSEQIGVNLDGANRLVELISRG
NDGYVHKATFVNTDALFDDKWHKLVMSVEEDQVSLYIDCNLVDTLPFTDRAPADVDGDTL
VGRIGKNNAKSAAIELQWMIIHCDPTRAHRESCDELPALCPVCPAGPAGQPGPPGPPGEN
GIQGDPGPDGFAGIDGLDGERGPPGPQGFQGVSGQKGEPGEIGAPGTEGLIGPAGIPGSL
GLPGPAGPQGPPGDVNTVEGPPGRPGAPGPRGPPGLPGPSGGATAGERVVSNGEVGFVGP
PGYPGPKGHKGYKGEPGPDGKQGPKGDAGPEGEQGPAGPGGESGPRGARGYPGEDGRKGE
VGPAGVPGEMGAPGEQGLQGAEGPPGVPGERGAKGGTGDRGPLGNPGGPGLPGEPGLPGR
NGADGIPGTPGERGRPGESGPKGTEGAIGAPGNSGEQGIQGQPGERGFPGIKGHKGASGM
TGAKGEPGNDGNEGPEGNPGPQGTAGTPGERGSPGTPGENGQRGPGGPPGIIGPEGPRGQ
SGPRGPQGESGPRGVPGLQGPPGRMPSDQKILEVCRRVLRDEMRGMMAATRPRGIITGGA
PGRPGPVGPPGQQGPQGQSGLPGKTGMQGAQGVPGMPGRTGPKGFGGDKGDRGAPGIGSV
GLPGPAGPPGPQGSPGFGKDGRNGERGEPGLPGPTGYIGPQGSVGPPGYCDPSTCLMGQV
RGIQQPKGPNGQKGPDAADSPLGSEPPAGTNRRRAARTRHRPEMNDIQF

Nucleotide sequence

Length: 2,831

>KH2012:KH.C8.248.v4.A.ND1-1
AGGAATGTGTACCCAATGGGACTTCCAAGCGAATATTCTTTCGTAAGCACCTTTAGAATG
CTGGGAAAGAACACAAGAAAGCAATGGAAGCTTTGGCTGGTCAACGATGGAGATGGTTCA
GAACAGATTGGAGTCAATTTGGACGGAGCCAACCGATTGGTTGAGCTAATATCACGTGGC
AATGACGGTTACGTACACAAAGCCACGTTCGTGAACACGGACGCTTTATTTGATGATAAA
TGGCACAAACTCGTCATGTCCGTCGAGGAAGACCAAGTCTCATTGTACATTGATTGTAAC
TTGGTTGACACGCTACCCTTCACTGATCGCGCACCTGCCGATGTAGATGGTGACACGTTG
GTGGGGAGGATCGGGAAAAACAACGCAAAGTCTGCGGCAATTGAACTACAGTGGATGATA
ATACATTGCGACCCGACAAGAGCGCATAGGGAATCATGCGACGAACTACCTGCCTTGTGC
CCGGTTTGTCCAGCGGGACCTGCAGGACAACCAGGACCCCCAGGACCACCCGGTGAGAAC
GGAATCCAAGGAGATCCTGGACCAGATGGTTTCGCTGGAATTGATGGACTTGATGGTGAA
AGAGGACCACCAGGACCCCAGGGGTTTCAGGGAGTCTCTGGTCAAAAGGGAGAACCAGGA
GAAATTGGTGCACCTGGAACAGAGGGACTCATTGGACCTGCAGGGATACCGGGAAGCCTT
GGGTTACCTGGTCCAGCTGGCCCACAAGGACCTCCAGGTGATGTGAACACCGTTGAGGGA
CCTCCTGGACGACCAGGTGCTCCTGGACCAAGGGGACCACCAGGACTTCCCGGACCATCT
GGAGGCGCTACGGCTGGTGAAAGAGTGGTTTCAAATGGTGAAGTTGGTTTTGTTGGACCA
CCAGGTTATCCCGGACCCAAGGGTCATAAGGGATACAAAGGTGAACCCGGTCCTGATGGA
AAACAAGGTCCAAAGGGTGATGCCGGTCCTGAGGGAGAACAAGGACCAGCTGGTCCTGGC
GGTGAATCTGGTCCACGTGGGGCACGAGGTTACCCGGGAGAAGATGGGAGAAAGGGAGAA
GTAGGCCCTGCAGGAGTACCTGGAGAAATGGGTGCACCTGGTGAACAAGGTTTACAGGGA
GCTGAAGGTCCTCCTGGAGTCCCAGGAGAGAGGGGAGCCAAGGGAGGAACTGGGGATCGA
GGTCCTCTTGGAAACCCTGGAGGACCCGGACTTCCTGGAGAACCGGGTCTACCCGGTAGA
AATGGAGCTGATGGTATCCCAGGAACCCCAGGAGAACGGGGACGACCAGGAGAGTCAGGA
CCAAAAGGAACAGAAGGTGCCATAGGAGCTCCTGGTAATTCAGGAGAACAAGGTATTCAG
GGTCAACCTGGTGAACGTGGATTCCCTGGAATCAAAGGACACAAAGGAGCATCTGGTATG
ACTGGCGCCAAGGGAGAACCTGGTAATGATGGAAATGAGGGACCAGAAGGCAACCCTGGA
CCACAGGGAACTGCTGGAACTCCAGGAGAACGTGGATCACCAGGAACACCGGGTGAAAAT
GGGCAACGTGGGCCAGGTGGACCACCGGGCATCATTGGACCAGAAGGACCCAGGGGCCAA
TCTGGGCCACGAGGACCACAAGGAGAATCTGGACCAAGAGGCGTCCCTGGATTACAAGGC
CCTCCTGGGCGCATGCCAAGTGACCAAAAGATTCTGGAAGTTTGCCGTAGGGTGCTTCGA
GATGAGATGAGAGGTATGATGGCAGCAACCAGACCCCGAGGTATCATCACTGGTGGAGCT
CCTGGAAGACCTGGACCTGTTGGACCACCTGGACAGCAAGGACCACAAGGACAATCTGGT
CTTCCTGGTAAAACTGGAATGCAAGGTGCACAGGGTGTTCCTGGAATGCCTGGACGTACT
GGACCCAAAGGATTTGGTGGTGATAAAGGTGACAGAGGAGCGCCAGGAATTGGCAGCGTT
GGTCTTCCAGGACCTGCTGGTCCTCCAGGACCCCAAGGATCACCAGGGTTTGGTAAAGAT
GGTCGTAACGGAGAACGTGGTGAACCCGGCTTACCTGGACCCACAGGTTACATTGGGCCA
CAGGGTTCTGTTGGTCCTCCTGGTTACTGCGACCCATCTACTTGCTTGATGGGTCAAGTC
CGTGGCATTCAACAACCTAAAGGTCCAAATGGCCAGAAAGGTCCTGATGCAGCGGACAGC
CCATTGGGCTCAGAACCACCTGCGGGCACAAACCGTCGCCGTGCTGCACGTACCCGCCAC
CGACCCGAGATGAATGATATTCAGTTTTAACTGAAACTAAAAACTACTTTGATTACCGCG
CGATCGCACCGTGTGGAGATATGACTCAAAATTTGTAATGTAACCAATTTTATCTGCGTG
CGTTATATTTTTCCATCACCGTGCTACAGTATATTGTTGCATCATATTAGCCGTCGTCAT
GTTGTCGTCACTGCTTGTTGTCAGTTTGTTTTCCGAAGCGATTTTACATTTTATTACATT
TTCACGCCTAAAAAGTGTCATGATTTACTGAGATGGCTGCGTTTGTACAAGAGATTGGAA
CTTTTTCATATAGTAGGATTTTGAAAGACACCTTTGGCGTACAATATCCAAATATCCGGA
TCGTGTTTCAAATAACTAACAACGCTTTATGGGTGTTGTAAGGATACGAATTTGCAATTT
TTGTTTACTACTAAACGGATGAGAAAATACAATGAAAAAGTGTCCCATTTCCCCCCACCC
TACTATACAACATTTCACTAAAACTAAAATATCTATGTTGTCCAGTGTGGTTTGGACATT
AGTTATTACAA

InterProScan

SMART
Laminin_G (IPR001791) - T[1-145] 1.7E-18
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[2-150] 9.5E-23
Pfam
Collagen (IPR008160) - T[166-223] 7.7E-10 - T[298-353] 4.7E-8 - T[509-564] 1.4E-7 - T[599-656] 4.0E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COLA1_HUMAN 39.706 % 276 2.34E-80
CO9A1_HUMAN 41.769 % 354 2.7E-109
COJA1_HUMAN 33.882 % 204 5.55E-55