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TRANSCRIPT CARD

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  1. Region 'REG00000878' > 
  2. Transcript 'KH2012:KH.C8.640.v2....' > 
  3. Transcript 'KH2012:KH.C2.101.v2....' > 
  4. Clone 'ma312o01' > 
  5. Transcript 'KH2012:KH.C8.248.v5....'

Transcript Model

Transcript Id

KH2012:KH.C8.248.v5.A.ND1-1

Possible name(s)

COL19A1; COL21A1; COL24A1

Gene model

KH2012:KH.C8.248

Location

KhC8 [5,996,820 / 6,014,996]

Sequences

Amino acid sequence

Length: 778

>KH.C8.248.v5.A.ND1-1
RNVYPMGLPSEYSFVSTFRMLGKNTRKQWKLWLVNDGDGSEQIGVNLDGANRLVELISRG
NDGYVHKATFVNTDALFDDKWHKLVMSVEEDQVSLYIDCNLVDTLPFTDRAPADVDGDTL
VGRIGKNNAKSAAIELQWMIIHCDPTRAHRESCDELPALVPEAAIGKGCPVCPAGPAGQP
GPPGPPGENGIQGDPGPDGFAGIDGLDGERGPPGPQGFQGVSGQKGEPGEIGAPGTEGLI
GPAGIPGSLGLPGPAGPQGPPGDVNTVEGPPGRPGAPGPRGPPGLPGPSGGATAGERVVS
NGEVGFVGPPGYPGPKGHKGYKGEPGPDGKQGPKGDAGPEGEQGPAGPGGESGPRGARGY
PGEDGRKGEVGPAGVPGEMGAPGEQGLQGAEGPPGVPGERGAKGGTGDRGPLGNPGGPGL
PGEPGLPGRNGADGIPGTPGERGRPGESGPKGTEGAIGAPGNSGEQGIQGQPGERGFPGI
KGHKGASGMTGAKGEPGNDGNEGPEGNPGPQGTAGTPGERGSPGTPGENGQRGPGGPPGI
IGPEGPRGQSGPRGPQGESGPRGVPGLQGPPGRMPSDQKILEVCRRVLRDEMRGMMAATR
PRGIITGGAPGRPGPVGPPGQQGPQGQSGLPGKTGMQGAQGVPGMPGRTGPKGFGGDKGD
RGAPGIGSVGLPGPAGPPGPQGSPGFGKDGRNGERGEPGLPGPTGYIGPQGSVGPPGYCD
PSTCLMGQVRGIQQPKGPNGQKGPDAADSPLGSEPPAGTNRRRAARTRHRPEMNDIQF

Nucleotide sequence

Length: 2,858

>KH2012:KH.C8.248.v5.A.ND1-1
AGGAATGTGTACCCAATGGGACTTCCAAGCGAATATTCTTTCGTAAGCACCTTTAGAATG
CTGGGAAAGAACACAAGAAAGCAATGGAAGCTTTGGCTGGTCAACGATGGAGATGGTTCA
GAACAGATTGGAGTCAATTTGGACGGAGCCAACCGATTGGTTGAGCTAATATCACGTGGC
AATGACGGTTACGTACACAAAGCCACGTTCGTGAACACGGACGCTTTATTTGATGATAAA
TGGCACAAACTCGTCATGTCCGTCGAGGAAGACCAAGTCTCATTGTACATTGATTGTAAC
TTGGTTGACACGCTACCCTTCACTGATCGCGCACCTGCCGATGTAGATGGTGACACGTTG
GTGGGGAGGATCGGGAAAAACAACGCAAAGTCTGCGGCAATTGAACTACAGTGGATGATA
ATACATTGCGACCCGACAAGAGCGCATAGGGAATCATGCGACGAACTACCTGCCTTGGTC
CCAGAAGCCGCGATTGGAAAAGGGTGCCCGGTTTGTCCAGCGGGACCTGCAGGACAACCA
GGACCCCCAGGACCACCCGGTGAGAACGGAATCCAAGGAGATCCTGGACCAGATGGTTTC
GCTGGAATTGATGGACTTGATGGTGAAAGAGGACCACCAGGACCCCAGGGGTTTCAGGGA
GTCTCTGGTCAAAAGGGAGAACCAGGAGAAATTGGTGCACCTGGAACAGAGGGACTCATT
GGACCTGCAGGGATACCGGGAAGCCTTGGGTTACCTGGTCCAGCTGGCCCACAAGGACCT
CCAGGTGATGTGAACACCGTTGAGGGACCTCCTGGACGACCAGGTGCTCCTGGACCAAGG
GGACCACCAGGACTTCCCGGACCATCTGGAGGCGCTACGGCTGGTGAAAGAGTGGTTTCA
AATGGTGAAGTTGGTTTTGTTGGACCACCAGGTTATCCCGGACCCAAGGGTCATAAGGGA
TACAAAGGTGAACCCGGTCCTGATGGAAAACAAGGTCCAAAGGGTGATGCCGGTCCTGAG
GGAGAACAAGGACCAGCTGGTCCTGGCGGTGAATCTGGTCCACGTGGGGCACGAGGTTAC
CCGGGAGAAGATGGGAGAAAGGGAGAAGTAGGCCCTGCAGGAGTACCTGGAGAAATGGGT
GCACCTGGTGAACAAGGTTTACAGGGAGCTGAAGGTCCTCCTGGAGTCCCAGGAGAGAGG
GGAGCCAAGGGAGGAACTGGGGATCGAGGTCCTCTTGGAAACCCTGGAGGACCCGGACTT
CCTGGAGAACCGGGTCTACCCGGTAGAAATGGAGCTGATGGTATCCCAGGAACCCCAGGA
GAACGGGGACGACCAGGAGAGTCAGGACCAAAAGGAACAGAAGGTGCCATAGGAGCTCCT
GGTAATTCAGGAGAACAAGGTATTCAGGGTCAACCTGGTGAACGTGGATTCCCTGGAATC
AAAGGACACAAAGGAGCATCTGGTATGACTGGCGCCAAGGGAGAACCTGGTAATGATGGA
AATGAGGGACCAGAAGGCAACCCTGGACCACAGGGAACTGCTGGAACTCCAGGAGAACGT
GGATCACCAGGAACACCGGGTGAAAATGGGCAACGTGGGCCAGGTGGACCACCGGGCATC
ATTGGACCAGAAGGACCCAGGGGCCAATCTGGGCCACGAGGACCACAAGGAGAATCTGGA
CCAAGAGGCGTCCCTGGATTACAAGGCCCTCCTGGGCGCATGCCAAGTGACCAAAAGATT
CTGGAAGTTTGCCGTAGGGTGCTTCGAGATGAGATGAGAGGTATGATGGCAGCAACCAGA
CCCCGAGGTATCATCACTGGTGGAGCTCCTGGAAGACCTGGACCTGTTGGACCACCTGGA
CAGCAAGGACCACAAGGACAATCTGGTCTTCCTGGTAAAACTGGAATGCAAGGTGCACAG
GGTGTTCCTGGAATGCCTGGACGTACTGGACCCAAAGGATTTGGTGGTGATAAAGGTGAC
AGAGGAGCGCCAGGAATTGGCAGCGTTGGTCTTCCAGGACCTGCTGGTCCTCCAGGACCC
CAAGGATCACCAGGGTTTGGTAAAGATGGTCGTAACGGAGAACGTGGTGAACCCGGCTTA
CCTGGACCCACAGGTTACATTGGGCCACAGGGTTCTGTTGGTCCTCCTGGTTACTGCGAC
CCATCTACTTGCTTGATGGGTCAAGTCCGTGGCATTCAACAACCTAAAGGTCCAAATGGC
CAGAAAGGTCCTGATGCAGCGGACAGCCCATTGGGCTCAGAACCACCTGCGGGCACAAAC
CGTCGCCGTGCTGCACGTACCCGCCACCGACCCGAGATGAATGATATTCAGTTTTAACTG
AAACTAAAAACTACTTTGATTACCGCGCGATCGCACCGTGTGGAGATATGACTCAAAATT
TGTAATGTAACCAATTTTATCTGCGTGCGTTATATTTTTCCATCACCGTGCTACAGTATA
TTGTTGCATCATATTAGCCGTCGTCATGTTGTCGTCACTGCTTGTTGTCAGTTTGTTTTC
CGAAGCGATTTTACATTTTATTACATTTTCACGCCTAAAAAGTGTCATGATTTACTGAGA
TGGCTGCGTTTGTACAAGAGATTGGAACTTTTTCATATAGTAGGATTTTGAAAGACACCT
TTGGCGTACAATATCCAAATATCCGGATCGTGTTTCAAATAACTAACAACGCTTTATGGG
TGTTGTAAGGATACGAATTTGCAATTTTTGTTTACTACTAAACGGATGAGAAAATACAAT
GAAAAAGTGTCCCATTTCCCCCCACCCTACTATACAACATTTCACTAAAACTAAAATATC
TATGTTGTCCAGTGTGGTTTGGACATTAGTTATTACAA

InterProScan

SMART
Laminin_G (IPR001791) - T[1-145] 1.7E-18
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[2-150] 1.09E-22
Pfam
Collagen (IPR008160) - T[175-230] 7.9E-10 - T[515-573] 1.4E-7 - T[608-665] 4.1E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COLA1_HUMAN 39.841 % 273 3.69E-79
CO9A1_HUMAN 41.404 % 352 2.74E-108
COJA1_HUMAN 36.833 % 213 1.26E-57