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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C3.310.v1....' > 
  2. Transcript 'Boleac.CG.SB_v3.S540...' > 
  3. Transcript 'KH2012:KH.C3.310.v1....' > 
  4. Transcript 'KH2012:KH.C10.587.v1...' > 
  5. Transcript 'KH2012:KH.C8.248.v7....'

Transcript Model

Transcript Id

KH2012:KH.C8.248.v7.A.ND1-1

Possible name(s)

COL19A1; COL21A1; COL24A1

Gene model

KH2012:KH.C8.248

Location

KhC8 [5,996,820 / 6,014,996]

Sequences

Amino acid sequence

Length: 780

>KH.C8.248.v7.A.ND1-1
RNVYPMGLPSEYSFVSTFRMLGKNTRKQWKLWLVNDGDGSEQIGVNLDGANRLVELISRG
NDGYVHKATFVNTDALFDDKWHKLVMSVEEDQVSLYIDCNLVDTLPFTDRAPADVDGDTL
VGRIGKNNAKSAAIELQWMIIHCDPTRAHRESCDELPALVPEAAIGKGCPVCPAGPAGQP
GPPGPPGENGIQGDPGPDGFAGIDGLDGERGPPGPQGFQGVSGQKGEPGEIGAPGTEGLI
GPAGIPGSLGLPGPAGPQGPPGDVNTVEGPPGRPGAPGPRGPPGLPGPSGGATAGDIGSG
ADPSGPVYVGPPGYPGPKGHKGYKGEPGPDGKQGPKGDAGPEGEQGPAGPGGESGPRGAR
GYPGEDGRKGEVGPAGVPGEMGAPGEQGLQGAEGPPGVPGERGAKGGTGDRGPLGNPGGP
GLPGEPGLPGRNGADGIPGTPGERGRPGESGPKGTEGAIGAPGNSGEQGIQGQPGERGFP
GIKGHKGASGMTGAKGEPGNDGNEGPEGNPGPQGTAGTPGERGSPGTPGENGQRGPGGPP
GIIGPEGPRGQSGPRGPQGESGPRGVPGLQGPPGRMPSDQKILEVCRRVLRDEMRGMMAA
TRPRGIITGGAPGRPGPVGPPGQQGPQGQSGLPGKTGMQGAQGVPGMPGRTGPKGFGGDK
GDRGAPGIGSVGLPGPAGPPGPQGSPGFGKDGRNGERGEPGLPGPTGYIGPQGSVGPPGY
CDPSTCLMGQVRGIQQPKGPNGQKGPDAADSPLGSEPPAGTNRRRAARTRHRPEMNDIQF

Nucleotide sequence

Length: 2,864

>KH2012:KH.C8.248.v7.A.ND1-1
AGGAATGTGTACCCAATGGGACTTCCAAGCGAATATTCTTTCGTAAGCACCTTTAGAATG
CTGGGAAAGAACACAAGAAAGCAATGGAAGCTTTGGCTGGTCAACGATGGAGATGGTTCA
GAACAGATTGGAGTCAATTTGGACGGAGCCAACCGATTGGTTGAGCTAATATCACGTGGC
AATGACGGTTACGTACACAAAGCCACGTTCGTGAACACGGACGCTTTATTTGATGATAAA
TGGCACAAACTCGTCATGTCCGTCGAGGAAGACCAAGTCTCATTGTACATTGATTGTAAC
TTGGTTGACACGCTACCCTTCACTGATCGCGCACCTGCCGATGTAGATGGTGACACGTTG
GTGGGGAGGATCGGGAAAAACAACGCAAAGTCTGCGGCAATTGAACTACAGTGGATGATA
ATACATTGCGACCCGACAAGAGCGCATAGGGAATCATGCGACGAACTACCTGCCTTGGTC
CCAGAAGCCGCGATTGGAAAAGGGTGCCCGGTTTGTCCAGCGGGACCTGCAGGACAACCA
GGACCCCCAGGACCACCCGGTGAGAACGGAATCCAAGGAGATCCTGGACCAGATGGTTTC
GCTGGAATTGATGGACTTGATGGTGAAAGAGGACCACCAGGACCCCAGGGGTTTCAGGGA
GTCTCTGGTCAAAAGGGAGAACCAGGAGAAATTGGTGCACCTGGAACAGAGGGACTCATT
GGACCTGCAGGGATACCGGGAAGCCTTGGGTTACCTGGTCCAGCTGGCCCACAAGGACCT
CCAGGTGATGTGAACACCGTTGAGGGACCTCCTGGACGACCAGGTGCTCCTGGACCAAGG
GGACCACCAGGACTTCCCGGACCATCTGGAGGCGCTACGGCTGGTGATATTGGTTCAGGG
GCTGATCCATCTGGCCCAGTCTATGTTGGACCACCAGGTTATCCCGGACCCAAGGGTCAT
AAGGGATACAAAGGTGAACCCGGTCCTGATGGAAAACAAGGTCCAAAGGGTGATGCCGGT
CCTGAGGGAGAACAAGGACCAGCTGGTCCTGGCGGTGAATCTGGTCCACGTGGGGCACGA
GGTTACCCGGGAGAAGATGGGAGAAAGGGAGAAGTAGGCCCTGCAGGAGTACCTGGAGAA
ATGGGTGCACCTGGTGAACAAGGTTTACAGGGAGCTGAAGGTCCTCCTGGAGTCCCAGGA
GAGAGGGGAGCCAAGGGAGGAACTGGGGATCGAGGTCCTCTTGGAAACCCTGGAGGACCC
GGACTTCCTGGAGAACCGGGTCTACCCGGTAGAAATGGAGCTGATGGTATCCCAGGAACC
CCAGGAGAACGGGGACGACCAGGAGAGTCAGGACCAAAAGGAACAGAAGGTGCCATAGGA
GCTCCTGGTAATTCAGGAGAACAAGGTATTCAGGGTCAACCTGGTGAACGTGGATTCCCT
GGAATCAAAGGACACAAAGGAGCATCTGGTATGACTGGCGCCAAGGGAGAACCTGGTAAT
GATGGAAATGAGGGACCAGAAGGCAACCCTGGACCACAGGGAACTGCTGGAACTCCAGGA
GAACGTGGATCACCAGGAACACCGGGTGAAAATGGGCAACGTGGGCCAGGTGGACCACCG
GGCATCATTGGACCAGAAGGACCCAGGGGCCAATCTGGGCCACGAGGACCACAAGGAGAA
TCTGGACCAAGAGGCGTCCCTGGATTACAAGGCCCTCCTGGGCGCATGCCAAGTGACCAA
AAGATTCTGGAAGTTTGCCGTAGGGTGCTTCGAGATGAGATGAGAGGTATGATGGCAGCA
ACCAGACCCCGAGGTATCATCACTGGTGGAGCTCCTGGAAGACCTGGACCTGTTGGACCA
CCTGGACAGCAAGGACCACAAGGACAATCTGGTCTTCCTGGTAAAACTGGAATGCAAGGT
GCACAGGGTGTTCCTGGAATGCCTGGACGTACTGGACCCAAAGGATTTGGTGGTGATAAA
GGTGACAGAGGAGCGCCAGGAATTGGCAGCGTTGGTCTTCCAGGACCTGCTGGTCCTCCA
GGACCCCAAGGATCACCAGGGTTTGGTAAAGATGGTCGTAACGGAGAACGTGGTGAACCC
GGCTTACCTGGACCCACAGGTTACATTGGGCCACAGGGTTCTGTTGGTCCTCCTGGTTAC
TGCGACCCATCTACTTGCTTGATGGGTCAAGTCCGTGGCATTCAACAACCTAAAGGTCCA
AATGGCCAGAAAGGTCCTGATGCAGCGGACAGCCCATTGGGCTCAGAACCACCTGCGGGC
ACAAACCGTCGCCGTGCTGCACGTACCCGCCACCGACCCGAGATGAATGATATTCAGTTT
TAACTGAAACTAAAAACTACTTTGATTACCGCGCGATCGCACCGTGTGGAGATATGACTC
AAAATTTGTAATGTAACCAATTTTATCTGCGTGCGTTATATTTTTCCATCACCGTGCTAC
AGTATATTGTTGCATCATATTAGCCGTCGTCATGTTGTCGTCACTGCTTGTTGTCAGTTT
GTTTTCCGAAGCGATTTTACATTTTATTACATTTTCACGCCTAAAAAGTGTCATGATTTA
CTGAGATGGCTGCGTTTGTACAAGAGATTGGAACTTTTTCATATAGTAGGATTTTGAAAG
ACACCTTTGGCGTACAATATCCAAATATCCGGATCGTGTTTCAAATAACTAACAACGCTT
TATGGGTGTTGTAAGGATACGAATTTGCAATTTTTGTTTACTACTAAACGGATGAGAAAA
TACAATGAAAAAGTGTCCCATTTCCCCCCACCCTACTATACAACATTTCACTAAAACTAA
AATATCTATGTTGTCCAGTGTGGTTTGGACATTAGTTATTACAA

InterProScan

SMART
Laminin_G (IPR001791) - T[1-145] 1.7E-18
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[2-150] 1.09E-22
Pfam
Collagen (IPR008160) - T[175-229] 2.7E-9 - T[310-368] 3.1E-8 - T[442-500] 7.8E-10 - T[472-530] 1.8E-7 - T[520-575] 1.4E-7 - T[610-667] 4.3E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COLA1_HUMAN 39.735 % 272 1.28E-78
COOA1_HUMAN 37.649 % 191 4.0E-50
COJA1_HUMAN 35.884 % 211 7.56E-57