- Transcript 'KH2012:KH.C8.359.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.359.v1.R.ND1-1
Possible name(s)
DHH; IHH; SHH
Gene model
Location
KhC8 [1,633,951 / 1,643,086]
Amino acid sequence
Length: 569
>KH.C8.359.v1.R.ND1-1
RYQCIRLKDNINMLEDLDSVQARLSPDNVNSTQDCCNENGSRTPAASCNQTVLQRFTNLI
CTCNLRRRQLQRLCFSTRKHKSHRSGAGYCTLLPTCASIRVHIAGFLAWTLLVAPLLSGI
AMDTRLLRRRSSLGGVSMCGACRPGHGSGGSRMPGRELVPFLKGEYVPKMSEQTIGASGP
VTGRIRADTPRFRQELVPNWNTDIEFRDEEESNEDRFMTPICRARLDYLAILVANQWARV
KLKVLEAWDDGNDKANDPLHYEGRAVDITTDDADRNKYPILARLAVVAGFDWVKYDGKVV
HCSVKSEESDAAKYGGCFPGESTVIVPGEGHVPISSLQPGDQVLAIDKSGAVITDTFLSF
MDARSDIVSGHQAYRQMVEITTENGFSVTLTRNHLIYVSKPTYDASLLTATSNATQQNNE
RLGLQDFTSPHSSFAAKVRQGDYIYTLPNSHTGPDTPSATVRPSRVVSVRTIETASGAYA
PLTYSGTIIVGGTAASCYAVIESDVIAHTVVSPFRYYHWLSLWFNGDSKDHRNCTHVGPV
RPTDGISLYSKLLHQIFSKVLPSWFFWAE
Nucleotide sequence
Length: 2,316
>KH2012:KH.C8.359.v1.R.ND1-1
GTAGATATCAATGTATAAGGCTGAAAGATAATATAAATATGCTAGAAGATCTGGATTCTG
TTCAAGCTCGTCTTTCACCGGACAATGTCAACTCAACGCAAGACTGCTGTAACGAAAATG
GCAGCAGAACCCCCGCTGCTTCGTGCAATCAAACTGTACTCCAACGCTTCACGAACTTGA
TCTGTACATGCAACCTACGGCGACGTCAGCTGCAGCGGCTCTGCTTCTCAACCCGCAAAC
ATAAATCGCATCGGTCAGGTGCTGGCTACTGTACCTTGCTACCGACCTGCGCCTCCATAC
GAGTCCACATTGCAGGCTTCCTGGCGTGGACGCTGCTCGTAGCCCCTTTGCTCAGCGGCA
TAGCCATGGACACAAGACTGCTTAGGCGCCGATCAAGCCTGGGCGGGGTGTCGATGTGTG
GCGCGTGCCGACCCGGGCACGGAAGCGGCGGCTCTCGGATGCCGGGTCGGGAGCTTGTGC
CGTTCTTGAAAGGTGAATACGTGCCGAAAATGTCCGAGCAGACGATCGGGGCAAGCGGGC
CGGTCACCGGGCGCATTAGAGCTGATACTCCCCGATTTCGACAAGAGCTGGTGCCGAATT
GGAACACAGATATCGAGTTCCGGGACGAGGAAGAAAGCAATGAGGATCGCTTCATGACCC
CGATATGCAGAGCTAGACTGGACTACCTTGCAATCCTCGTAGCGAACCAATGGGCGCGTG
TCAAACTGAAAGTTCTCGAAGCATGGGACGATGGGAACGATAAAGCCAACGACCCTTTGC
ATTATGAAGGTCGAGCCGTTGATATAACGACTGATGATGCAGACAGAAATAAATATCCGA
TTCTTGCTCGGCTTGCAGTTGTGGCAGGGTTCGATTGGGTAAAATATGACGGAAAGGTCG
TCCACTGCTCCGTCAAGTCTGAGGAATCGGACGCAGCGAAATATGGAGGATGCTTTCCTG
GTGAGTCAACCGTGATCGTTCCTGGTGAAGGACATGTCCCAATCTCCAGTCTGCAACCTG
GAGACCAAGTGCTTGCTATAGACAAGAGCGGTGCAGTCATCACTGACACTTTCCTCTCGT
TTATGGATGCACGAAGTGATATCGTTTCAGGACACCAAGCTTATCGCCAAATGGTAGAGA
TCACAACAGAGAATGGCTTCTCTGTTACATTGACACGAAATCACTTGATATACGTATCTA
AGCCAACATATGACGCTTCCCTGTTGACTGCAACATCAAATGCAACACAGCAAAACAACG
AACGACTCGGTCTCCAAGATTTCACTTCACCGCATTCCAGCTTTGCTGCCAAAGTACGCC
AGGGCGACTACATCTACACACTCCCCAATTCGCATACTGGTCCCGACACCCCTAGCGCCA
CCGTACGGCCGTCTCGTGTTGTGAGCGTACGAACCATTGAAACTGCAAGTGGAGCATATG
CCCCACTTACATACAGTGGTACCATCATAGTAGGTGGAACAGCAGCGTCATGTTACGCCG
TCATCGAAAGTGACGTCATAGCGCACACGGTGGTTTCCCCGTTTCGTTACTACCATTGGT
TAAGCTTATGGTTTAACGGTGACAGCAAAGACCACCGAAACTGTACACACGTCGGACCAG
TGCGGCCGACCGATGGCATATCGTTATATTCTAAGTTATTGCACCAGATTTTTTCAAAGG
TTTTGCCCAGTTGGTTTTTCTGGGCGGAGTAGACTGCTATGCGTGCGAGAGGCCCTTCTG
GGGTCGTAAACAGAAAAGCATTTAAACTAAGTCTGTAATATTTAAGTACAACCGTACAGA
GCTGCCACGCTCCATGTAGTAAGGTTGGGGAAAATGGGACACCTTTTCACTCTATTTTCT
CGTTCCATTTGGCAGTAAACAAACAACATTCAAAGAATTATAAAACCGTATCCTCACGAC
TTCCATAAACCGTTCTTAATTGTTTAAAACACGGTATTTGGATATTATGTGCTGAAGGTG
TCCCGTCTCCCCCTACAGTACTATATATACTGAAGTGGAATCGCTACTTTGAAATCATTA
TTCCCCGTTTCATTTATACTTAAACTTCAATGCTGTTGTTATTTCTTTGTTTCTTTTTTA
ATTTACCGTTCCCGATTGCACATACATATCTCGTCATTTTATCTGCGTTTCCTTTTCATG
TTTCCTATTTTTATACCCTTCTTATCTTATATTATTGTTGTTGTATTTTCTTGTCAGCAA
AGTGCTTTAATGGTTTCTTCACGCCTCGCTTCTTCAATGCGCATGAGGTTAAGATGACGA
CATGTACTTTTCGAATTAAAGGATGATGAGATCAGC
| Gene3D |
Hedgehog_sig/DD-Pept_Zn-bd_sf (IPR009045) - T[139-307] 2.0E-61 |
| Pfam |
Hedgehog_signalling_dom (IPR000320) - T[142-303] 1.1E-71 |
| SUPERFAMILY |
Hedgehog_sig/DD-Pept_Zn-bd_sf (IPR009045) - T[158-312] 1.31E-64 |
| PRINTS |
Hedgehog (IPR001657) - T[217-235] 1.3E-39 - T[237-254] 1.3E-39 - T[257-279] 1.3E-39 - T[281-302] 1.3E-39 - T[477-491] 1.3E-39 - T[493-516] 1.3E-39 - T[545-561] 1.3E-39 |
| Pfam |
Hint_dom (IPR001767) - T[306-561] 4.8E-75 |
| SMART |
Hint_dom_N (IPR003587) - T[315-448] 4.1E-16 |
| SUPERFAMILY |
Hint_dom_sf (IPR036844) - T[317-499] 8.41E-30 |
| TIGRFAM |
Intein_N (IPR006141) - T[317-398] 6.0E-6 |
| ProSiteProfiles |
Intein_N (IPR006141) - T[317-398] 9.689 |
| SMART |
Hint_dom_C (IPR003586) - T[458-503] 1.3E-5 |