- Molecular Tool 'Mitf>Twist' >
- Transcript 'KH2012:KH.C4.457.v1....' >
- Molecular Tool 'Dmbx>Twist' >
- Transcript 'KH2012:KH.L141.57.v1...' >
- Transcript 'KH2012:KH.C8.445.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.445.v1.A.ND2-1
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
KhC8 [3,069,932 / 3,076,597]
Amino acid sequence
Length: 682
>KH.C8.445.v1.A.ND2-1
YIIACSKYLLYIGPLDIAIAVKCNPCLSSPCQHNSTCSHHPTEYYQCTCQSGFKGRHCEM
PIDPCILEPCNNGGRCIARDEAVYTCECPVGFSGDRCEVNVDDCTPTSCPVSNATCVDGV
NEFTCKCPVGWMGNHCSEQIPDPCTLEQPCQNGGSCVLVQEIDSISYRCDCDTGYRGVNC
TDRFDPCRDHKCENAGICERNPQSAIGYQCNCQGEYRGQYCTFPMNSVDVLQDDPCSDND
CQHGSLCYVEQGRGYSCVCLPGYTGDKCEKLVSVSFHRNGSFIKIPQPGLLDTNFTLTVS
TTQPNGVLLYDGAGGTSREHLAIEFFTGHVRVSFDLGSSPGSTIYSRVPINDGEAHKVEL
LIRDHMVSLKVDSGEAIVERMTSSMTSSSEVIGAGQFSPLFIGGIQTDLLQSARRLWHIR
NTNSFKGCIHTFYINQTQLMFNDLIPHDDITNDIRPGCRGNEAVHSCSLERPCLNGHCIF
DQSTGPVCRCDEGFTGDRCTDRVTPCTSNACQHGTCRVDGDSYTCQCEKGFSGRHCDTLD
YCAGVDCRRGRCVSTDIGYQCVCKKRYTGRHCQTRIRPCPGTRIKQYYQVSKVSKKSRAV
GGTTICRSRRRFTNMVCSGSCPANHRRQTKRVSVFGQADAASTSCCRPMRVQNKSIRMKC
RDGTVMTHVLKKVKKCGCQSCS
Nucleotide sequence
Length: 2,724
>KH2012:KH.C8.445.v1.A.ND2-1
CACTTCTATTAAATGGCCTATGCTTAAAAATTAGTAAAGAAATATCAAATAATTATTACA
GATATTTCTTAAGTTTCAAGCAGGTTTAAATATAACTTGAACATATTTGCATGGCACTGT
GTTATAATTTGCAATGCATGAAGTAGTCTATACAATTATATTCATACACCTTAATATATT
ATAGCCTGTAGTAAGTATCTTCTTTATATAGGACCTCTGGACATTGCAATTGCTGTGAAA
TGCAACCCATGCCTATCATCTCCATGCCAACATAACTCTACATGCAGCCACCATCCAACT
GAGTACTATCAATGCACTTGCCAGTCAGGATTCAAAGGCAGACATTGTGAGATGCCAATA
GACCCATGTATATTGGAACCTTGTAATAATGGTGGAAGATGCATTGCTAGAGATGAAGCA
GTTTATACTTGTGAATGTCCGGTTGGGTTTAGTGGGGACCGATGTGAAGTAAATGTTGAC
GACTGTACTCCTACCTCGTGCCCAGTGTCGAACGCCACATGCGTGGACGGTGTGAATGAA
TTCACTTGTAAATGCCCAGTTGGATGGATGGGAAACCACTGTAGTGAACAAATTCCTGAT
CCATGTACATTAGAACAACCATGTCAAAACGGTGGATCTTGCGTTCTTGTGCAAGAAATT
GATTCTATTTCTTACAGATGCGATTGTGACACGGGATACAGAGGGGTTAACTGCACAGAT
AGGTTTGATCCGTGTCGTGACCATAAGTGTGAGAATGCTGGTATCTGCGAAAGGAATCCA
CAATCTGCTATTGGATATCAATGTAACTGTCAAGGAGAATACAGAGGTCAATATTGTACT
TTCCCCATGAACTCTGTTGACGTCCTTCAAGATGATCCATGTTCTGATAATGATTGTCAA
CATGGTTCATTATGTTATGTTGAGCAAGGGAGAGGATATTCGTGTGTTTGTCTGCCTGGG
TATACTGGGGATAAATGTGAAAAACTTGTAAGTGTGAGTTTCCACCGTAATGGAAGTTTC
ATTAAGATCCCACAGCCTGGTTTATTGGACACCAATTTTACGCTCACTGTTTCGACAACT
CAGCCAAATGGTGTGTTATTATATGACGGGGCTGGTGGAACATCTCGGGAACATCTTGCT
ATCGAGTTCTTTACCGGGCATGTCAGGGTTAGTTTCGATTTAGGAAGTTCCCCCGGTTCA
ACTATCTACAGTAGAGTTCCCATTAATGATGGCGAAGCACACAAGGTTGAACTTTTAATC
CGTGACCACATGGTGTCACTAAAGGTTGACAGCGGTGAAGCAATTGTTGAACGTATGACA
TCATCAATGACATCATCAAGTGAGGTCATTGGAGCAGGGCAGTTTTCTCCACTTTTTATT
GGTGGAATTCAAACCGATCTCCTTCAATCAGCACGAAGGTTGTGGCACATCAGGAATACT
AACAGTTTTAAAGGTTGCATCCATACCTTCTACATCAACCAAACCCAACTCATGTTCAAC
GACCTCATACCTCATGATGACATCACCAATGACATCAGACCTGGTTGTCGTGGTAACGAG
GCCGTGCACTCTTGCTCCCTCGAGCGACCATGTTTAAACGGACATTGTATCTTCGATCAA
TCTACGGGACCTGTATGTAGATGTGATGAAGGATTCACAGGCGACAGATGCACAGATAGA
GTGACACCATGTACATCAAATGCTTGCCAACATGGAACATGTCGTGTGGATGGAGACAGT
TATACCTGCCAATGTGAAAAAGGTTTCAGTGGGCGACATTGTGATACGTTGGATTATTGC
GCTGGTGTTGATTGTAGAAGGGGAAGATGTGTTTCCACTGATATTGGTTATCAGTGTGTG
TGTAAGAAGCGTTATACTGGAAGACATTGTCAGACAAGGATACGTCCATGTCCAGGAACT
CGAATCAAGCAATATTATCAAGTCAGCAAAGTGAGTAAGAAGTCACGAGCTGTTGGTGGA
ACAACCATCTGTAGAAGTAGGAGAAGGTTTACGAACATGGTTTGCTCTGGTAGTTGCCCC
GCTAATCATCGCAGACAAACCAAACGTGTTTCAGTATTTGGTCAAGCAGATGCTGCGTCT
ACATCATGCTGTAGGCCCATGCGTGTGCAGAATAAGAGTATACGAATGAAGTGTAGGGAT
GGCACAGTAATGACTCATGTTCTAAAGAAGGTTAAGAAATGTGGATGTCAGTCTTGTTCT
TGAAGCGTATGTTGCAACCTTCTTATCAAAGGTGTTTCATGGAACAGTTAGGAGGCCAAG
CTGTGGGTGGTCCCAGTGAAGTGTCATCAGTGCCTCAAATATACTTTGTAAAATAGAATA
AAAGCAAGAAATGAGCAGCATATTTTAATAGCTCTGCCTTTCATAAAGTATTTTCAATTA
TTTGTAATTTTTAAATAAAATTCAGTTTACTTTAAATAAGACTAGTTCTACAAAGAACAC
TTTTAACCCCCTGTCAACTTGTTTATGAATGTTTTCCGTTACTTCTTATGCAACCAGTTA
TTGCAGTGTATATTTTCTCAATGCGTTTGTGTTATTATTTGTTTGTGTCCTTGTATTTTT
TTAAACCTGGCGGTCTAAAATGGATTTATATTCCATGACAATAACGTTTTGTTATAACTT
TATGAAATATGTTGTATATAAACCCGCACTGCTGAATTTTGTTGCGTTGTTAAGATAAAC
GTTAAATATATGTGCCATAAATGA
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[22-59] 0.083 - T[61-98] 0.0095 - T[100-137] 7.5E-6 - T[142-181] 0.62 - T[232-269] 0.28 - T[502-537] 0.065 - T[538-573] 0.0061 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[24-59] 16.57 - T[61-98] 21.093 - T[100-137] 16.675 - T[140-181] 18.762 - T[183-222] 15.167 - T[232-269] 20.034 - T[463-500] 13.451 - T[502-537] 15.671 - T[538-573] 13.044 |
| SMART |
EGF-like_dom (IPR000742) - T[25-59] 0.0027 - T[64-98] 1.4E-6 - T[103-137] 7.9E-4 - T[143-181] 1.4E-6 - T[186-222] 0.32 - T[235-269] 8.0E-6 - T[466-500] 6.1E-5 - T[505-537] 2.3E-5 - T[541-573] 0.0022 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[47-58] . - T[47-58] . - T[86-97] . - T[86-97] . - T[125-136] . - T[125-136] . - T[169-180] . - T[169-180] . - T[210-221] . - T[257-268] . - T[257-268] . - T[488-499] . - T[488-499] . - T[525-536] . - T[525-536] . - T[561-572] . |
| Pfam |
EGF-like_dom (IPR000742) - T[68-96] 3.0E-7 - T[144-178] 5.4E-7 - T[236-266] 1.3E-5 - T[467-498] 9.8E-5 - T[506-535] 2.2E-5 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[100-125] . |
| Pfam |
EGF-like_CS (IPR013032) - T[113-131] 4.4E-5 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[116-127] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[251-462] 4.35E-35 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[272-458] 33.698 |
| SMART |
Laminin_G (IPR001791) - T[291-437] 1.5E-27 |
| Pfam |
Laminin_G (IPR001791) - T[300-436] 1.1E-22 |
| ProSiteProfiles |
TGF-b_C (IPR001839) - T[563-679] 9.172 |
| SMART |
Cys_knot_C (IPR006207) - T[590-682] 2.8E-4 |
| ProSiteProfiles |
Cys_knot_C (IPR006207) - T[606-682] 11.273 |
| SUPERFAMILY |
Cystine-knot_cytokine (IPR029034) - T[611-678] 4.73E-5 |
| ProSitePatterns |
Cys_knot_C (IPR006207) - T[645-681] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 36.95 % | 401 | 1.1E-123 |
| SLIT3_HUMAN | 34.412 % | 360 | 7.22E-109 |
| SLIT2_HUMAN | 37.097 % | 383 | 3.56E-117 |