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  1. Transcript 'KH2012:KH.C4.516.v3....'
  2. Transcript 'KH2012:KH.C9.853.v1....'
  3. Transcript 'KH2012:KH.C8.445.v2....'

Transcript Model

Transcript Id

KH2012:KH.C8.445.v2.A.SL1-1

Possible name(s)

SLIT1; SLIT2; SLIT3

Location

KhC8 [3,069,932 / 3,113,830]

Sequences

Amino acid sequence

Length: 1,557

>KH.C8.445.v2.A.SL1-1
MWKILFLFTVCYNGFTNACPNECVCRGKTVTCTGRSLTYIPRNIPQVTERLELHRNNITQ
ITRNDLSGLTHLRKLYLQQNKITTIDDHAFQGLSSLRTLMILYKRNVVYSPETLNHLRFH
PADKHKSFISYGKLFLCSRQLDQNMINCIQDQTFRPLRSLEVLTLNNNNLSHVSPLVLRG
KMPHLRTLRLHTNPIRCNCHMAWLADWLSDRPTMAVFTQCAEPISLRGLNLASADRSEFL
CNEITAQRAPTCEISSCPSACICSNGIADCRDRGLTALPASFPLDTTELRLEQNRIQLIP
SFAFASYPQLRRIDISNNEIREIERDAFDGLTQLTSLVIYGNRISSLPAGIFRDLRNLQM
LLLNANKLTCLRRDVFNGLRSLTLLSLYDNKLQSISRGTFSNLKSIETMHLAQNPFICDC
HLRWLVSYVKKYKVETSGARCAGPRRMANKRISVAKTRRMRCTDSSSLTGPAAECIPEAE
CPSQCRCEGSVVDCSRQGLVTIPDNIPPYASELILSHNRIEMITSVGYFKKLRNLKKIDL
SNNQLAAIEDGSFSGAESVLELWLNDNVLSDLRGSMFSGLHNLRTLLIRNNHLSCIGNHT
FAGLSTVRHLALYSNQITTILSGAFSTMTSLSTLNLLSNPLDCNCHLSWLSTWLRQSHVA
SGNPRCAEPRFLREFPVADINPRDFRCSTDHEARAAPTCLPVQKCPEQCTCEGTIVRCAN
AGLTSVPVDDIPHDVTELYLEMNDIREIPVAIKKFIYLTTLDLSNNELASVSDWMFSNLT
RLSTLLLAYNRLRCIPPKAFAGLRSLRILSLHSNELSSLPEGAFNDLTSLSHVGFGANPW
YCDCNLRWFSQWVKSDFFEAGIARCSAPPRMAGRLLLSSSLETFVCRGPLDIAIAVKCNP
CLSSPCQHNSTCSHHPTEYYQCTCQSGFKGRHCEMPIDPCILEPCNNGGRCIARDEAVYT
CECPVGFSGDRCEVNVDDCTPTSCPVSNATCVDGVNEFTCKCPVGWMGNHCSEQIPDPCT
LEQPCQNGGSCVLVQEIDSISYRCDCDTGYRGVNCTDRFDPCRDHKCENAGICERNPQSA
IGYQCNCQGEYRGQYCTFPMNSVDVLQDDPCSDNDCQHGSLCYVEQGRGYSCVCLPGYTG
DKCEKLVSVSFHRNGSFIKIPQPGLLDTNFTLTVSTTQPNGVLLYDGAGGTSREHLAIEF
FTGHVRVSFDLGSSPGSTIYSRVPINDGEAHKVELLIRDHMVSLKVDSGEAIVERMTSSM
TSSSEVIGAGQFSPLFIGGIQTDLLQSARRLWHIRNTNSFKGCIHTFYINQTQLMFNDLI
PHDDITNDIRPGCRGNEAVHSCSLERPCLNGHCIFDQSTGPVCRCDEGFTGDRCTDRVTP
CTSNACQHGTCRVDGDSYTCQCEKGFSGRHCDTLDYCAGVDCRRGRCVSTDIGYQCVCKK
RYTGRHCQTRIRPCPGTRIKQYYQVSKVSKKSRAVGGTTICRSRRRFTNMVCSGSCPANH
RRQTKRVSVFGQADAASTSCCRPMRVQNKSIRMKCRDGTVMTHVLKKVKKCGCQSCS

Nucleotide sequence

Length: 5,176

>KH2012:KH.C8.445.v2.A.SL1-1
AATGTGGAAAATTTTGTTCTTGTTTACGGTCTGTTACAACGGATTTACAAACGCATGCCC
GAATGAATGCGTATGTCGCGGCAAAACAGTTACTTGTACTGGCCGAAGTCTTACCTACAT
ACCACGTAACATACCCCAAGTCACAGAAAGACTGGAGCTACATAGAAACAACATAACTCA
AATTACAAGAAATGATTTATCGGGACTTACCCATCTTCGAAAACTGTATCTGCAACAGAA
TAAAATCACAACAATTGACGATCACGCTTTTCAAGGATTGAGCTCTCTCAGGACTCTAAT
GATTCTGTATAAACGAAATGTGGTATATAGTCCCGAAACACTTAACCATTTACGTTTCCA
CCCAGCGGATAAACATAAAAGTTTTATATCTTATGGTAAACTGTTTCTTTGTTCCAGACA
ACTCGACCAGAATATGATCAACTGCATCCAAGACCAAACGTTTCGACCACTTCGTAGTCT
GGAGGTTCTAACATTAAATAACAACAACTTATCACACGTGTCACCGTTGGTGCTTCGAGG
AAAGATGCCTCATTTGCGAACTCTCCGACTCCACACTAATCCAATCAGATGCAATTGCCA
CATGGCCTGGCTCGCTGATTGGCTGTCCGATCGTCCAACAATGGCCGTATTCACCCAATG
CGCTGAACCAATCAGCTTAAGAGGTTTGAACCTTGCCTCAGCTGATAGAAGCGAATTCCT
TTGCAACGAAATCACAGCACAACGCGCACCAACTTGCGAAATATCGTCTTGTCCCTCAGC
CTGTATTTGCAGCAATGGTATTGCAGATTGCAGGGATCGTGGACTTACTGCGCTACCAGC
TTCTTTCCCATTAGATACAACTGAATTGCGATTGGAGCAAAATCGAATCCAACTCATCCC
AAGTTTTGCATTCGCTTCATACCCACAACTACGCAGAATTGATATCAGCAATAATGAGAT
TCGAGAAATTGAAAGAGACGCTTTTGATGGCCTTACACAACTCACATCACTGGTTATTTA
CGGGAATCGAATTTCATCACTTCCTGCTGGAATATTCAGAGATCTACGGAACTTACAAAT
GCTGTTGCTTAATGCGAATAAATTAACATGCCTAAGAAGAGATGTCTTCAACGGCCTACG
CTCTCTCACATTGCTGTCATTATACGACAACAAACTACAATCAATATCAAGAGGAACTTT
CTCCAACCTGAAATCCATAGAAACAATGCACCTTGCACAAAATCCGTTTATATGTGATTG
CCACTTGCGTTGGTTGGTTAGTTATGTGAAGAAATATAAAGTAGAAACATCTGGTGCACG
ATGTGCTGGCCCTCGTAGGATGGCAAACAAAAGAATATCAGTGGCAAAGACAAGAAGAAT
GAGATGTACTGATTCAAGCAGCTTAACTGGCCCAGCAGCAGAGTGTATACCTGAAGCAGA
GTGTCCAAGTCAATGCAGATGTGAAGGTTCAGTTGTAGATTGTTCAAGACAAGGCCTCGT
TACAATACCTGATAATATTCCACCTTATGCATCGGAATTGATCTTGAGTCACAACAGAAT
AGAAATGATCACAAGTGTTGGTTACTTTAAAAAGTTGCGAAACTTAAAGAAAATTGATCT
TTCCAACAATCAGCTCGCTGCAATCGAAGACGGTTCGTTCTCAGGAGCTGAAAGTGTTCT
GGAACTTTGGTTGAATGACAACGTGTTATCTGATCTAAGAGGATCCATGTTTAGTGGATT
ACATAACCTAAGAACTCTTTTGATTCGCAACAACCATCTTTCTTGTATTGGAAACCACAC
ATTCGCTGGTTTATCCACTGTACGCCATCTTGCCCTCTACTCCAATCAAATCACTACGAT
TCTCAGTGGAGCATTCAGCACTATGACATCACTAAGCACATTAAATCTTCTATCAAACCC
ACTTGACTGCAATTGCCACCTTTCGTGGTTGTCCACTTGGTTGCGCCAGAGCCACGTAGC
TTCGGGGAATCCCCGGTGTGCAGAACCTCGTTTCTTGAGGGAGTTCCCCGTAGCTGATAT
CAACCCTCGTGATTTCCGATGTAGCACGGATCATGAGGCGCGAGCTGCACCTACTTGCTT
GCCTGTGCAGAAGTGCCCAGAGCAATGCACATGTGAAGGTACCATAGTCCGATGCGCAAA
TGCTGGTTTAACATCGGTGCCTGTTGATGATATACCACATGATGTTACTGAGTTGTATCT
GGAGATGAATGATATTCGTGAAATACCAGTGGCTATCAAGAAGTTTATATACCTCACTAC
TTTAGACCTCAGCAACAACGAGTTAGCGAGTGTCAGTGACTGGATGTTTTCCAACCTAAC
CCGGTTGTCCACGTTGTTACTCGCATACAACAGACTACGATGCATTCCTCCTAAAGCATT
TGCTGGACTACGATCACTACGTATACTTTCACTTCATAGCAACGAACTTTCAAGTTTACC
TGAAGGAGCTTTTAATGATTTGACTTCGTTGTCGCATGTTGGATTCGGGGCCAACCCTTG
GTACTGTGACTGCAACCTACGTTGGTTTAGTCAGTGGGTGAAATCTGACTTCTTTGAGGC
TGGAATTGCTAGATGTTCTGCTCCACCAAGAATGGCGGGTCGTCTTTTGCTCTCGTCATC
ACTGGAAACATTCGTGTGTCGAGGACCTCTGGACATTGCAATTGCTGTGAAATGCAACCC
ATGCCTATCATCTCCATGCCAACATAACTCTACATGCAGCCACCATCCAACTGAGTACTA
TCAATGCACTTGCCAGTCAGGATTCAAAGGCAGACATTGTGAGATGCCAATAGACCCATG
TATATTGGAACCTTGTAATAATGGTGGAAGATGCATTGCTAGAGATGAAGCAGTTTATAC
TTGTGAATGTCCGGTTGGGTTTAGTGGGGACCGATGTGAAGTAAATGTTGACGACTGTAC
TCCTACCTCGTGCCCAGTGTCGAACGCCACATGCGTGGACGGTGTGAATGAATTCACTTG
TAAATGCCCAGTTGGATGGATGGGAAACCACTGTAGTGAACAAATTCCTGATCCATGTAC
ATTAGAACAACCATGTCAAAACGGTGGATCTTGCGTTCTTGTGCAAGAAATTGATTCTAT
TTCTTACAGATGCGATTGTGACACGGGATACAGAGGGGTTAACTGCACAGATAGGTTTGA
TCCGTGTCGTGACCATAAGTGTGAGAATGCTGGTATCTGCGAAAGGAATCCACAATCTGC
TATTGGATATCAATGTAACTGTCAAGGAGAATACAGAGGTCAATATTGTACTTTCCCCAT
GAACTCTGTTGACGTCCTTCAAGATGATCCATGTTCTGATAATGATTGTCAACATGGTTC
ATTATGTTATGTTGAGCAAGGGAGAGGATATTCGTGTGTTTGTCTGCCTGGGTATACTGG
GGATAAATGTGAAAAACTTGTAAGTGTGAGTTTCCACCGTAATGGAAGTTTCATTAAGAT
CCCACAGCCTGGTTTATTGGACACCAATTTTACGCTCACTGTTTCGACAACTCAGCCAAA
TGGTGTGTTATTATATGACGGGGCTGGTGGAACATCTCGGGAACATCTTGCTATCGAGTT
CTTTACCGGGCATGTCAGGGTTAGTTTCGATTTAGGAAGTTCCCCCGGTTCAACTATCTA
CAGTAGAGTTCCCATTAATGATGGCGAAGCACACAAGGTTGAACTTTTAATCCGTGACCA
CATGGTGTCACTAAAGGTTGACAGCGGTGAAGCAATTGTTGAACGTATGACATCATCAAT
GACATCATCAAGTGAGGTCATTGGAGCAGGGCAGTTTTCTCCACTTTTTATTGGTGGAAT
TCAAACCGATCTCCTTCAATCAGCACGAAGGTTGTGGCACATCAGGAATACTAACAGTTT
TAAAGGTTGCATCCATACCTTCTACATCAACCAAACCCAACTCATGTTCAACGACCTCAT
ACCTCATGATGACATCACCAATGACATCAGACCTGGTTGTCGTGGTAACGAGGCCGTGCA
CTCTTGCTCCCTCGAGCGACCATGTTTAAACGGACATTGTATCTTCGATCAATCTACGGG
ACCTGTATGTAGATGTGATGAAGGATTCACAGGCGACAGATGCACAGATAGAGTGACACC
ATGTACATCAAATGCTTGCCAACATGGAACATGTCGTGTGGATGGAGACAGTTATACCTG
CCAATGTGAAAAAGGTTTCAGTGGGCGACATTGTGATACGTTGGATTATTGCGCTGGTGT
TGATTGTAGAAGGGGAAGATGTGTTTCCACTGATATTGGTTATCAGTGTGTGTGTAAGAA
GCGTTATACTGGAAGACATTGTCAGACAAGGATACGTCCATGTCCAGGAACTCGAATCAA
GCAATATTATCAAGTCAGCAAAGTGAGTAAGAAGTCACGAGCTGTTGGTGGAACAACCAT
CTGTAGAAGTAGGAGAAGGTTTACGAACATGGTTTGCTCTGGTAGTTGCCCCGCTAATCA
TCGCAGACAAACCAAACGTGTTTCAGTATTTGGTCAAGCAGATGCTGCGTCTACATCATG
CTGTAGGCCCATGCGTGTGCAGAATAAGAGTATACGAATGAAGTGTAGGGATGGCACAGT
AATGACTCATGTTCTAAAGAAGGTTAAGAAATGTGGATGTCAGTCTTGTTCTTGAAGCGT
ATGTTGCAACCTTCTTATCAAAGGTGTTTCATGGAACAGTTAGGAGGCCAAGCTGTGGGT
GGTCCCAGTGAAGTGTCATCAGTGCCTCAAATATACTTTGTAAAATAGAATAAAAGCAAG
AAATGAGCAGCATATTTTAATAGCTCTGCCTTTCATAAAGTATTTTCAATTATTTGTAAT
TTTTAAATAAAATTCAGTTTACTTTAAATAAGACTAGTTCTACAAAGAACACTTTTAACC
CCCTGTCAACTTGTTTATGAATGTTTTCCGTTACTTCTTATGCAACCAGTTATTGCAGTG
TATATTTTCTCAATGCGTTTGTGTTATTATTTGTTTGTGTCCTTGTATTTTTTTAAACCT
GGCGGTCTAAAATGGATTTATATTCCATGACAATAACGTTTTGTTATAACTTTATGAAAT
ATGTTGTATATAAACCCGCACTGCTGAATTTTGTTGCGTTGTTAAGATAAACGTTAAATA
TATGTGCCATAAATGA

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[15-120] 8.1E-25 - T[138-246] 1.5E-22 - T[254-468] 7.8E-65 - T[478-696] 2.5E-61 - T[702-889] 4.1E-56
SMART
LRRNT (IPR000372) - T[18-50] 6.8E-6 - T[256-288] 5.1E-6 - T[480-512] 6.3E-7 - T[704-737] 1.4E-4
Pfam
LRRNT (IPR000372) - T[18-45] 1.0E-6 - T[481-507] 1.2E-5
SMART
Leu-rich_rpt_typical-subtyp (IPR003591) - T[44-68] 120.0 - T[69-92] 9.6E-5 - T[157-180] 0.014 - T[182-205] 220.0 - T[287-306] 150.0 - T[307-330] 5.7 - T[331-354] 0.0028 - T[355-378] 0.015 - T[379-402] 0.0045 - T[532-555] 4.0E-4 - T[557-579] 260.0 - T[580-603] 0.19 - T[604-627] 7.6 - T[755-778] 9.4 - T[779-802] 0.0013 - T[803-826] 1.9E-5
ProSiteProfiles
Leu-rich_rpt (IPR001611) - T[47-70] 4.909 - T[71-92] 7.912 - T[159-180] 7.45 - T[184-205] 5.263 - T[285-306] 5.356 - T[309-330] 6.657 - T[333-354] 6.164 - T[357-378] 5.409 - T[381-402] 6.634 - T[509-530] 5.24 - T[534-555] 7.62 - T[558-579] 5.294 - T[582-603] 6.68 - T[606-627] 5.571 - T[630-651] 5.895 - T[734-755] 5.001 - T[757-778] 7.404 - T[781-802] 6.441 - T[805-826] 7.412
Pfam
Leu-rich_rpt (IPR001611) - T[49-99] 2.7E-11 - T[141-195] 4.0E-7 - T[287-344] 1.5E-12 - T[356-415] 5.5E-12 - T[533-593] 4.2E-12 - T[758-816] 4.6E-14
SMART
Cys-rich_flank_reg_C (IPR000483) - T[193-242] 1.8E-5 - T[414-463] 9.0E-7 - T[639-688] 1.0E-9 - T[838-887] 4.3E-13
Pfam
Cys-rich_flank_reg_C (IPR000483) - T[217-241] 2.6 - T[439-452] 24.0 - T[663-688] 9.4E-4 - T[863-886] 0.094
SMART
EGF-like_Ca-bd_dom (IPR001881) - T[897-934] 0.083 - T[936-973] 0.0095 - T[975-1012] 7.5E-6 - T[1017-1056] 0.62 - T[1107-1144] 0.28 - T[1377-1412] 0.065 - T[1413-1448] 0.0061
ProSiteProfiles
EGF-like_dom (IPR000742) - T[899-934] 16.57 - T[936-973] 21.093 - T[975-1012] 16.675 - T[1015-1056] 18.762 - T[1058-1097] 15.167 - T[1107-1144] 20.034 - T[1338-1375] 13.451 - T[1377-1412] 15.671 - T[1413-1448] 13.044
SMART
EGF-like_dom (IPR000742) - T[900-934] 0.0027 - T[939-973] 1.4E-6 - T[978-1012] 7.9E-4 - T[1018-1056] 1.4E-6 - T[1061-1097] 0.32 - T[1110-1144] 8.0E-6 - T[1341-1375] 6.1E-5 - T[1380-1412] 2.3E-5 - T[1416-1448] 0.0022
ProSitePatterns
EGF-like_CS (IPR013032) - T[922-933] . - T[922-933] . - T[961-972] . - T[961-972] . - T[1000-1011] . - T[1000-1011] . - T[1044-1055] . - T[1044-1055] . - T[1085-1096] . - T[1132-1143] . - T[1132-1143] . - T[1363-1374] . - T[1363-1374] . - T[1400-1411] . - T[1400-1411] . - T[1436-1447] .
Pfam
EGF-like_dom (IPR000742) - T[943-971] 9.0E-7 - T[1019-1053] 1.4E-6 - T[1111-1141] 3.2E-5 - T[1381-1410] 5.5E-5
ProSitePatterns
EGF_Ca-bd_CS (IPR018097) - T[975-1000] .
Pfam
EGF-like_CS (IPR013032) - T[988-1006] 1.1E-4 - T[1348-1369] 0.026
ProSitePatterns
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[991-1002] .
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[1126-1337] 1.72E-34
ProSiteProfiles
Laminin_G (IPR001791) - T[1147-1333] 33.698
SMART
Laminin_G (IPR001791) - T[1166-1312] 1.5E-27
Pfam
Laminin_G (IPR001791) - T[1175-1311] 3.5E-22
ProSiteProfiles
TGF-b_C (IPR001839) - T[1438-1554] 9.172
SMART
Cys_knot_C (IPR006207) - T[1465-1557] 2.8E-4
ProSiteProfiles
Cys_knot_C (IPR006207) - T[1481-1557] 11.273
ProSitePatterns
Cys_knot_C (IPR006207) - T[1520-1556] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SLIT1_HUMAN 44.952 % 1290 0
SLIT3_HUMAN 43.267 % 1261 0
SLIT2_HUMAN 44.713 % 1305 0