- Transcript 'Cisavi.CG.ENS81.R30....' >
- Transcript 'KH2012:KH.C8.445.v2....'
Transcript Model
Transcript Id
KH2012:KH.C8.445.v2.A.SL3-1
Possible name(s)
SLIT1; SLIT2; SLIT3
Gene model
Location
KhC8 [3,069,932 / 3,113,847]
Amino acid sequence
Length: 1,563
>KH.C8.445.v2.A.SL3-1
SKNDSRMWKILFLFTVCYNGFTNACPNECVCRGKTVTCTGRSLTYIPRNIPQVTERLELH
RNNITQITRNDLSGLTHLRKLYLQQNKITTIDDHAFQGLSSLRTLMILYKRNVVYSPETL
NHLRFHPADKHKSFISYGKLFLCSRQLDQNMINCIQDQTFRPLRSLEVLTLNNNNLSHVS
PLVLRGKMPHLRTLRLHTNPIRCNCHMAWLADWLSDRPTMAVFTQCAEPISLRGLNLASA
DRSEFLCNEITAQRAPTCEISSCPSACICSNGIADCRDRGLTALPASFPLDTTELRLEQN
RIQLIPSFAFASYPQLRRIDISNNEIREIERDAFDGLTQLTSLVIYGNRISSLPAGIFRD
LRNLQMLLLNANKLTCLRRDVFNGLRSLTLLSLYDNKLQSISRGTFSNLKSIETMHLAQN
PFICDCHLRWLVSYVKKYKVETSGARCAGPRRMANKRISVAKTRRMRCTDSSSLTGPAAE
CIPEAECPSQCRCEGSVVDCSRQGLVTIPDNIPPYASELILSHNRIEMITSVGYFKKLRN
LKKIDLSNNQLAAIEDGSFSGAESVLELWLNDNVLSDLRGSMFSGLHNLRTLLIRNNHLS
CIGNHTFAGLSTVRHLALYSNQITTILSGAFSTMTSLSTLNLLSNPLDCNCHLSWLSTWL
RQSHVASGNPRCAEPRFLREFPVADINPRDFRCSTDHEARAAPTCLPVQKCPEQCTCEGT
IVRCANAGLTSVPVDDIPHDVTELYLEMNDIREIPVAIKKFIYLTTLDLSNNELASVSDW
MFSNLTRLSTLLLAYNRLRCIPPKAFAGLRSLRILSLHSNELSSLPEGAFNDLTSLSHVG
FGANPWYCDCNLRWFSQWVKSDFFEAGIARCSAPPRMAGRLLLSSSLETFVCRGPLDIAI
AVKCNPCLSSPCQHNSTCSHHPTEYYQCTCQSGFKGRHCEMPIDPCILEPCNNGGRCIAR
DEAVYTCECPVGFSGDRCEVNVDDCTPTSCPVSNATCVDGVNEFTCKCPVGWMGNHCSEQ
IPDPCTLEQPCQNGGSCVLVQEIDSISYRCDCDTGYRGVNCTDRFDPCRDHKCENAGICE
RNPQSAIGYQCNCQGEYRGQYCTFPMNSVDVLQDDPCSDNDCQHGSLCYVEQGRGYSCVC
LPGYTGDKCEKLVSVSFHRNGSFIKIPQPGLLDTNFTLTVSTTQPNGVLLYDGAGGTSRE
HLAIEFFTGHVRVSFDLGSSPGSTIYSRVPINDGEAHKVELLIRDHMVSLKVDSGEAIVE
RMTSSMTSSSEVIGAGQFSPLFIGGIQTDLLQSARRLWHIRNTNSFKGCIHTFYINQTQL
MFNDLIPHDDITNDIRPGCRGNEAVHSCSLERPCLNGHCIFDQSTGPVCRCDEGFTGDRC
TDRVTPCTSNACQHGTCRVDGDSYTCQCEKGFSGRHCDTLDYCAGVDCRRGRCVSTDIGY
QCVCKKRYTGRHCQTRIRPCPGTRIKQYYQVSKVSKKSRAVGGTTICRSRRRFTNMVCSG
SCPANHRRQTKRVSVFGQADAASTSCCRPMRVQNKSIRMKCRDGTVMTHVLKKVKKCGCQ
SCS
Nucleotide sequence
Length: 5,193
>KH2012:KH.C8.445.v2.A.SL3-1
AGCAAGAACGATAGCAGAATGTGGAAAATTTTGTTCTTGTTTACGGTCTGTTACAACGGA
TTTACAAACGCATGCCCGAATGAATGCGTATGTCGCGGCAAAACAGTTACTTGTACTGGC
CGAAGTCTTACCTACATACCACGTAACATACCCCAAGTCACAGAAAGACTGGAGCTACAT
AGAAACAACATAACTCAAATTACAAGAAATGATTTATCGGGACTTACCCATCTTCGAAAA
CTGTATCTGCAACAGAATAAAATCACAACAATTGACGATCACGCTTTTCAAGGATTGAGC
TCTCTCAGGACTCTAATGATTCTGTATAAACGAAATGTGGTATATAGTCCCGAAACACTT
AACCATTTACGTTTCCACCCAGCGGATAAACATAAAAGTTTTATATCTTATGGTAAACTG
TTTCTTTGTTCCAGACAACTCGACCAGAATATGATCAACTGCATCCAAGACCAAACGTTT
CGACCACTTCGTAGTCTGGAGGTTCTAACATTAAATAACAACAACTTATCACACGTGTCA
CCGTTGGTGCTTCGAGGAAAGATGCCTCATTTGCGAACTCTCCGACTCCACACTAATCCA
ATCAGATGCAATTGCCACATGGCCTGGCTCGCTGATTGGCTGTCCGATCGTCCAACAATG
GCCGTATTCACCCAATGCGCTGAACCAATCAGCTTAAGAGGTTTGAACCTTGCCTCAGCT
GATAGAAGCGAATTCCTTTGCAACGAAATCACAGCACAACGCGCACCAACTTGCGAAATA
TCGTCTTGTCCCTCAGCCTGTATTTGCAGCAATGGTATTGCAGATTGCAGGGATCGTGGA
CTTACTGCGCTACCAGCTTCTTTCCCATTAGATACAACTGAATTGCGATTGGAGCAAAAT
CGAATCCAACTCATCCCAAGTTTTGCATTCGCTTCATACCCACAACTACGCAGAATTGAT
ATCAGCAATAATGAGATTCGAGAAATTGAAAGAGACGCTTTTGATGGCCTTACACAACTC
ACATCACTGGTTATTTACGGGAATCGAATTTCATCACTTCCTGCTGGAATATTCAGAGAT
CTACGGAACTTACAAATGCTGTTGCTTAATGCGAATAAATTAACATGCCTAAGAAGAGAT
GTCTTCAACGGCCTACGCTCTCTCACATTGCTGTCATTATACGACAACAAACTACAATCA
ATATCAAGAGGAACTTTCTCCAACCTGAAATCCATAGAAACAATGCACCTTGCACAAAAT
CCGTTTATATGTGATTGCCACTTGCGTTGGTTGGTTAGTTATGTGAAGAAATATAAAGTA
GAAACATCTGGTGCACGATGTGCTGGCCCTCGTAGGATGGCAAACAAAAGAATATCAGTG
GCAAAGACAAGAAGAATGAGATGTACTGATTCAAGCAGCTTAACTGGCCCAGCAGCAGAG
TGTATACCTGAAGCAGAGTGTCCAAGTCAATGCAGATGTGAAGGTTCAGTTGTAGATTGT
TCAAGACAAGGCCTCGTTACAATACCTGATAATATTCCACCTTATGCATCGGAATTGATC
TTGAGTCACAACAGAATAGAAATGATCACAAGTGTTGGTTACTTTAAAAAGTTGCGAAAC
TTAAAGAAAATTGATCTTTCCAACAATCAGCTCGCTGCAATCGAAGACGGTTCGTTCTCA
GGAGCTGAAAGTGTTCTGGAACTTTGGTTGAATGACAACGTGTTATCTGATCTAAGAGGA
TCCATGTTTAGTGGATTACATAACCTAAGAACTCTTTTGATTCGCAACAACCATCTTTCT
TGTATTGGAAACCACACATTCGCTGGTTTATCCACTGTACGCCATCTTGCCCTCTACTCC
AATCAAATCACTACGATTCTCAGTGGAGCATTCAGCACTATGACATCACTAAGCACATTA
AATCTTCTATCAAACCCACTTGACTGCAATTGCCACCTTTCGTGGTTGTCCACTTGGTTG
CGCCAGAGCCACGTAGCTTCGGGGAATCCCCGGTGTGCAGAACCTCGTTTCTTGAGGGAG
TTCCCCGTAGCTGATATCAACCCTCGTGATTTCCGATGTAGCACGGATCATGAGGCGCGA
GCTGCACCTACTTGCTTGCCTGTGCAGAAGTGCCCAGAGCAATGCACATGTGAAGGTACC
ATAGTCCGATGCGCAAATGCTGGTTTAACATCGGTGCCTGTTGATGATATACCACATGAT
GTTACTGAGTTGTATCTGGAGATGAATGATATTCGTGAAATACCAGTGGCTATCAAGAAG
TTTATATACCTCACTACTTTAGACCTCAGCAACAACGAGTTAGCGAGTGTCAGTGACTGG
ATGTTTTCCAACCTAACCCGGTTGTCCACGTTGTTACTCGCATACAACAGACTACGATGC
ATTCCTCCTAAAGCATTTGCTGGACTACGATCACTACGTATACTTTCACTTCATAGCAAC
GAACTTTCAAGTTTACCTGAAGGAGCTTTTAATGATTTGACTTCGTTGTCGCATGTTGGA
TTCGGGGCCAACCCTTGGTACTGTGACTGCAACCTACGTTGGTTTAGTCAGTGGGTGAAA
TCTGACTTCTTTGAGGCTGGAATTGCTAGATGTTCTGCTCCACCAAGAATGGCGGGTCGT
CTTTTGCTCTCGTCATCACTGGAAACATTCGTGTGTCGAGGACCTCTGGACATTGCAATT
GCTGTGAAATGCAACCCATGCCTATCATCTCCATGCCAACATAACTCTACATGCAGCCAC
CATCCAACTGAGTACTATCAATGCACTTGCCAGTCAGGATTCAAAGGCAGACATTGTGAG
ATGCCAATAGACCCATGTATATTGGAACCTTGTAATAATGGTGGAAGATGCATTGCTAGA
GATGAAGCAGTTTATACTTGTGAATGTCCGGTTGGGTTTAGTGGGGACCGATGTGAAGTA
AATGTTGACGACTGTACTCCTACCTCGTGCCCAGTGTCGAACGCCACATGCGTGGACGGT
GTGAATGAATTCACTTGTAAATGCCCAGTTGGATGGATGGGAAACCACTGTAGTGAACAA
ATTCCTGATCCATGTACATTAGAACAACCATGTCAAAACGGTGGATCTTGCGTTCTTGTG
CAAGAAATTGATTCTATTTCTTACAGATGCGATTGTGACACGGGATACAGAGGGGTTAAC
TGCACAGATAGGTTTGATCCGTGTCGTGACCATAAGTGTGAGAATGCTGGTATCTGCGAA
AGGAATCCACAATCTGCTATTGGATATCAATGTAACTGTCAAGGAGAATACAGAGGTCAA
TATTGTACTTTCCCCATGAACTCTGTTGACGTCCTTCAAGATGATCCATGTTCTGATAAT
GATTGTCAACATGGTTCATTATGTTATGTTGAGCAAGGGAGAGGATATTCGTGTGTTTGT
CTGCCTGGGTATACTGGGGATAAATGTGAAAAACTTGTAAGTGTGAGTTTCCACCGTAAT
GGAAGTTTCATTAAGATCCCACAGCCTGGTTTATTGGACACCAATTTTACGCTCACTGTT
TCGACAACTCAGCCAAATGGTGTGTTATTATATGACGGGGCTGGTGGAACATCTCGGGAA
CATCTTGCTATCGAGTTCTTTACCGGGCATGTCAGGGTTAGTTTCGATTTAGGAAGTTCC
CCCGGTTCAACTATCTACAGTAGAGTTCCCATTAATGATGGCGAAGCACACAAGGTTGAA
CTTTTAATCCGTGACCACATGGTGTCACTAAAGGTTGACAGCGGTGAAGCAATTGTTGAA
CGTATGACATCATCAATGACATCATCAAGTGAGGTCATTGGAGCAGGGCAGTTTTCTCCA
CTTTTTATTGGTGGAATTCAAACCGATCTCCTTCAATCAGCACGAAGGTTGTGGCACATC
AGGAATACTAACAGTTTTAAAGGTTGCATCCATACCTTCTACATCAACCAAACCCAACTC
ATGTTCAACGACCTCATACCTCATGATGACATCACCAATGACATCAGACCTGGTTGTCGT
GGTAACGAGGCCGTGCACTCTTGCTCCCTCGAGCGACCATGTTTAAACGGACATTGTATC
TTCGATCAATCTACGGGACCTGTATGTAGATGTGATGAAGGATTCACAGGCGACAGATGC
ACAGATAGAGTGACACCATGTACATCAAATGCTTGCCAACATGGAACATGTCGTGTGGAT
GGAGACAGTTATACCTGCCAATGTGAAAAAGGTTTCAGTGGGCGACATTGTGATACGTTG
GATTATTGCGCTGGTGTTGATTGTAGAAGGGGAAGATGTGTTTCCACTGATATTGGTTAT
CAGTGTGTGTGTAAGAAGCGTTATACTGGAAGACATTGTCAGACAAGGATACGTCCATGT
CCAGGAACTCGAATCAAGCAATATTATCAAGTCAGCAAAGTGAGTAAGAAGTCACGAGCT
GTTGGTGGAACAACCATCTGTAGAAGTAGGAGAAGGTTTACGAACATGGTTTGCTCTGGT
AGTTGCCCCGCTAATCATCGCAGACAAACCAAACGTGTTTCAGTATTTGGTCAAGCAGAT
GCTGCGTCTACATCATGCTGTAGGCCCATGCGTGTGCAGAATAAGAGTATACGAATGAAG
TGTAGGGATGGCACAGTAATGACTCATGTTCTAAAGAAGGTTAAGAAATGTGGATGTCAG
TCTTGTTCTTGAAGCGTATGTTGCAACCTTCTTATCAAAGGTGTTTCATGGAACAGTTAG
GAGGCCAAGCTGTGGGTGGTCCCAGTGAAGTGTCATCAGTGCCTCAAATATACTTTGTAA
AATAGAATAAAAGCAAGAAATGAGCAGCATATTTTAATAGCTCTGCCTTTCATAAAGTAT
TTTCAATTATTTGTAATTTTTAAATAAAATTCAGTTTACTTTAAATAAGACTAGTTCTAC
AAAGAACACTTTTAACCCCCTGTCAACTTGTTTATGAATGTTTTCCGTTACTTCTTATGC
AACCAGTTATTGCAGTGTATATTTTCTCAATGCGTTTGTGTTATTATTTGTTTGTGTCCT
TGTATTTTTTTAAACCTGGCGGTCTAAAATGGATTTATATTCCATGACAATAACGTTTTG
TTATAACTTTATGAAATATGTTGTATATAAACCCGCACTGCTGAATTTTGTTGCGTTGTT
AAGATAAACGTTAAATATATGTGCCATAAATGA
| Gene3D |
LRR_dom_sf (IPR032675) - T[21-126] 8.1E-25 - T[144-252] 1.5E-22 - T[260-474] 7.9E-65 - T[484-702] 2.5E-61 - T[708-895] 4.2E-56 |
| SMART |
LRRNT (IPR000372) - T[24-56] 6.8E-6 - T[262-294] 5.1E-6 - T[486-518] 6.3E-7 - T[710-743] 1.4E-4 |
| Pfam |
LRRNT (IPR000372) - T[24-51] 1.0E-6 - T[487-513] 1.2E-5 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[50-74] 120.0 - T[75-98] 9.6E-5 - T[163-186] 0.014 - T[188-211] 220.0 - T[293-312] 150.0 - T[313-336] 5.7 - T[337-360] 0.0028 - T[361-384] 0.015 - T[385-408] 0.0045 - T[538-561] 4.0E-4 - T[563-585] 260.0 - T[586-609] 0.19 - T[610-633] 7.6 - T[761-784] 9.4 - T[785-808] 0.0013 - T[809-832] 1.9E-5 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[53-76] 4.909 - T[77-98] 7.912 - T[165-186] 7.45 - T[190-211] 5.263 - T[291-312] 5.356 - T[315-336] 6.657 - T[339-360] 6.164 - T[363-384] 5.409 - T[387-408] 6.634 - T[515-536] 5.24 - T[540-561] 7.62 - T[564-585] 5.294 - T[588-609] 6.68 - T[612-633] 5.571 - T[636-657] 5.895 - T[740-761] 5.001 - T[763-784] 7.404 - T[787-808] 6.441 - T[811-832] 7.412 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[55-105] 2.7E-11 - T[147-201] 4.0E-7 - T[293-350] 1.5E-12 - T[362-421] 5.6E-12 - T[539-599] 4.2E-12 - T[764-822] 4.7E-14 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[199-248] 1.8E-5 - T[420-469] 9.0E-7 - T[645-694] 1.0E-9 - T[844-893] 4.3E-13 |
| Pfam |
Cys-rich_flank_reg_C (IPR000483) - T[223-247] 2.6 - T[669-694] 9.5E-4 - T[869-892] 0.095 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[903-940] 0.083 - T[942-979] 0.0095 - T[981-1018] 7.5E-6 - T[1023-1062] 0.62 - T[1113-1150] 0.28 - T[1383-1418] 0.065 - T[1419-1454] 0.0061 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[905-940] 16.57 - T[942-979] 21.093 - T[981-1018] 16.675 - T[1021-1062] 18.762 - T[1064-1103] 15.167 - T[1113-1150] 20.034 - T[1344-1381] 13.451 - T[1383-1418] 15.671 - T[1419-1454] 13.044 |
| SMART |
EGF-like_dom (IPR000742) - T[906-940] 0.0027 - T[945-979] 1.4E-6 - T[984-1018] 7.9E-4 - T[1024-1062] 1.4E-6 - T[1067-1103] 0.32 - T[1116-1150] 8.0E-6 - T[1347-1381] 6.1E-5 - T[1386-1418] 2.3E-5 - T[1422-1454] 0.0022 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[928-939] . - T[928-939] . - T[967-978] . - T[967-978] . - T[1006-1017] . - T[1006-1017] . - T[1050-1061] . - T[1050-1061] . - T[1091-1102] . - T[1138-1149] . - T[1138-1149] . - T[1369-1380] . - T[1369-1380] . - T[1406-1417] . - T[1406-1417] . - T[1442-1453] . |
| Pfam |
EGF-like_dom (IPR000742) - T[949-977] 9.0E-7 - T[1025-1059] 1.4E-6 - T[1117-1147] 3.2E-5 - T[1387-1416] 5.5E-5 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[981-1006] . |
| Pfam |
EGF-like_CS (IPR013032) - T[994-1012] 1.1E-4 - T[1354-1375] 0.027 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[997-1008] . |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[1132-1343] 1.72E-34 |
| ProSiteProfiles |
Laminin_G (IPR001791) - T[1153-1339] 33.698 |
| SMART |
Laminin_G (IPR001791) - T[1172-1318] 1.5E-27 |
| Pfam |
Laminin_G (IPR001791) - T[1181-1317] 3.5E-22 |
| ProSiteProfiles |
TGF-b_C (IPR001839) - T[1444-1560] 9.172 |
| SMART |
Cys_knot_C (IPR006207) - T[1471-1563] 2.8E-4 |
| ProSiteProfiles |
Cys_knot_C (IPR006207) - T[1487-1563] 11.273 |
| ProSitePatterns |
Cys_knot_C (IPR006207) - T[1526-1562] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 44.952 % | 1290 | 0 |
| SLIT3_HUMAN | 43.267 % | 1260 | 0 |
| SLIT2_HUMAN | 44.713 % | 1306 | 0 |