- Transcript 'Cisavi.CG.ENS81.R19....' >
- Transcript 'Cisavi.CG.ENS81.R162...' >
- Clone 'ciad071n08' >
- Transcript 'KH2012:KH.C8.482.v2....'
Transcript Model
Transcript Id
KH2012:KH.C8.482.v2.A.ND1-1
Possible name(s)
NKX2-3; NKX2-5; NKX2-6
Gene model
Location
KhC8 [4,058,532 / 4,061,421]
Amino acid sequence
Length: 278
>KH.C8.482.v2.A.ND1-1
LYIGKAYRARKLNLFLCADSEKSDNVSTCSTSPEETEKKKTEDDTLKSRHRTRRKPRVLF
SQAQVFELERRFKQQRYLSAPEREHLAQILKLTSTQVKIWFQNRRYKCKRMRQDKTLELA
SIGPPRRVAVPVLVRDGKSCLGGPGQVSHNAAPYNVTVTRYHNYPSSYSSCGYNSYPPNP
PGYGPSAAAAAAVAGAAAAAYGNAATNGYNGFPPSMNGGQPGASPYPTPGLHQQHPPSMG
VGNSPFQTSTVPTGHHMSQGGLHHHTPTDYMYKLGLCT
Nucleotide sequence
Length: 2,889
>KH2012:KH.C8.482.v2.A.ND1-1
GTCGCTATGTATACAAAGCGGTTTAACATGCCCATAGTTATAATGTATCGCACATTATTT
CAAAACAATTTATTACGAGACGAATCGTTAAGGTGTTTGCTTTAACAAGTCAAATATTTA
CCATCTTGTTTAGCGTGTCGTATTATTCATCGACGATCACACGCTACCACTGAATCAAGT
TACAGCAGCGCTAAAACATTTTGCCGACGCCGATTTCCCGTTTTAGGGGGGAACTACCAG
TAACATAATCGTAAATTTATTTCAAGGGCGGTCGTCGCCATTTTAAACATCTAAATTATA
ATTTAGTTTACACTATATAGCCGGTTTTGTGATAAAACAGAAAATAAAGGCGCTGAAATG
AACCGTACTTTTTAATCAAATTCAAAATATGATGACTTAATGGATTATTAAACCGGTTTT
GAAAACAAAAACTGTTCTATTTTCTTGATGAGCGTACGGCATTTTTCTAAACAAACGTAG
GTGCTTTTATCAATGTGTTGAACGTCAAGAAATAAATTCACGCGTTTATTCACATAAGGC
CGAAATAGCTATTTGGTTAATATAGATCGTAAAAGTAAATTGAATCAAAGCCGGGCCTGG
CCGATGGTCGTCAGCGTGTCCAGCAGCGACTGTGATTTGTTTATCGGGTTATTGTTGGTC
AACAAACGACAGTCAGGGTTCGATTTCTGCGTCAATGCTGGTTAAGTTGGTTTTATGTAA
TAAATAATATTGATCTGTTTAAATTTAATGGGGAAGCACCGAATACGGGAATGTGGGTGC
GTCTTTTGGAGGACGCGAAATACCTAATATAGTTATAGTGTTTAATTCACAGTTAAACTG
TAATTACCGTCCATTAAAGCTTTCGCGGTCCTGTTCTCTTCAAAATTGATTTGAAAAGAT
TTCGTTTCTAGAAACTGGTTTAAACGAAAACGAAACGCGTGTTTCATGCAATTGTACGTT
TTATCATATTACTTAGGAATGGACAACGGAAGTTATACAATTATACCGCCATTTTGTAAA
CGGGTATTATCATTAAAAAGGATCATATGTAAATTTGTGTAATGGCGGTAGAGCACAGCG
TCATTCGGTCACAGCTCGTCTCGTTTTCGCACGGGTATCGCAAAATGTGGCGTCGTCTTT
TCTCGGGTCGCTAAATTTACAAACAAACCATGGATTTAGTTGTAAATCGAGCAGCGGAAA
GCATCGCAACAACAAGCAGTCGACATGCTCGGGACGCTGTAAGCGTTATCTGCGCCACAA
AATGATGGATCGGTCGACCCCCGTTCCCGATCGACAGAGATCGTCGGCTCGGCGCCTCTG
CGACAGTTGTTTGTCAGGCCAGGTTACCTGTATTTATTCCGCATCGACTATTGGTTCTGC
GGCATTGGCGCTACGCAGGAAACAAGTATGAAAACCACGGTGAACGTGACGTTAATTACC
GGTAGGGGAGATAAGATGATATATGTTCGCCACAGCGGTTCGTGCAAGATAATGCAAGAG
AGATTAACTTTATATTGGCAAAGCATACCGTGCGAGAAAACTTAATTTATTTCTTTGCGC
AGATTCGGAAAAGTCGGACAACGTCAGCACATGTAGCACTAGCCCCGAAGAAACTGAAAA
AAAGAAAACAGAAGATGACACGCTAAAATCCCGACACCGGACCAGGCGAAAACCGCGTGT
GCTGTTCTCCCAGGCACAAGTATTTGAGCTTGAGCGAAGATTTAAACAACAAAGATACTT
GTCTGCTCCGGAAAGAGAACATCTGGCCCAGATTTTAAAACTGACTTCCACCCAGGTCAA
GATCTGGTTCCAAAATCGTCGATACAAATGTAAACGAATGCGACAAGACAAAACCTTAGA
GCTGGCCAGTATTGGACCTCCACGAAGAGTTGCAGTTCCTGTTTTAGTTCGCGACGGGAA
GTCATGTCTCGGTGGGCCTGGTCAAGTATCACATAACGCGGCTCCATACAATGTGACTGT
TACACGCTACCACAATTACCCAAGTTCATATAGCTCTTGCGGTTATAACTCCTACCCCCC
TAACCCACCCGGTTACGGGCCAAGCGCTGCCGCAGCAGCAGCTGTAGCAGGAGCGGCCGC
TGCAGCATACGGGAACGCTGCTACGAACGGTTATAACGGATTTCCGCCGAGCATGAACGG
TGGACAGCCCGGTGCGAGCCCCTATCCTACTCCAGGGCTGCACCAACAGCACCCACCCTC
TATGGGGGTCGGGAATTCACCGTTTCAGACCTCGACTGTACCTACAGGCCACCATATGTC
TCAAGGGGGGTTGCACCATCACACACCAACGGACTATATGTATAAGCTTGGGCTGTGCAC
GTGATTTAAACTGATATATTGTGCATATATTGTTGCTGTGCATGTTCGTGCAATGTACCA
TGTTCCGCTACGACAAATAATCATGCCAAACCTTTAATTTGGTACTATTATACCAATTTC
TCGGCGACTCGGTACAACTTTTATTTATGTCTACTTTTAAACCCTGGACTTAGGCTTTCA
ACTGGGGAAACTAGGACTGCCATTTTAAACTCTTTAATGCTACTTAGTATATTGCTTTTC
ATTTATGCAGTGTTTTTAAAAAGTTATATCTCGATATCCCGTAACACGTTTGTTTATTTT
TACTTCGTACTATGCTGAGTCTACTCTACAATGAGCTTCACATGACTTGGCAAAACCAAT
CTAGGCTTAATTATGTAACAATACTTATTGTTTCGCACTCTCAGCTAAATTAAAACGTAC
CTCCCGAATTAAACTTATACAGTACACAGCTGCATATTACTTATAATGTGATTTTGGACG
TGTGCAATTATGTTGGTCGGCTGCTGGTTTAAAAAGTCGAATTTCTGAATAAACTTATTT
TGCCACATT
| PANTHER |
NKX-2.5 (IPR033629) - T[18-198] 7.0E-74 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[46-112] 8.55E-23 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[51-111] 20.099 |
| SMART |
Homeobox_dom (IPR001356) - T[53-115] 3.0E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[54-110] 4.3E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[54-112] 3.52926E-23 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[75-86] 1.3E-6 - T[90-100] 1.3E-6 - T[100-109] 1.3E-6 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[86-109] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NKX26_HUMAN | 58.58 % | 167 | 2.99E-50 |
| NKX25_HUMAN | 49.565 % | 155 | 1.21E-45 |
| NKX23_HUMAN | 57.988 % | 152 | 4.9E-44 |