- Transcript 'KH2012:KH.C2.1107.v1...' >
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- Transcript 'KH2012:KH.C8.626.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.626.v1.A.SL1-1
Possible name(s)
CTCF; CTCFL; ZNF317
Gene model
Location
KhC8 [2,130,528 / 2,138,880]
Amino acid sequence
Length: 1,326
>KH.C8.626.v1.A.SL1-1
LYNIVLCMLPGSFNMDCSGGILGQIFSENGFDNSMESNSDMKQDKFVKGFTHLQENIFPD
VHTLIQSCSDQLCKVESFTVENGQDGLCNQSTPQATASLRMSNGHSYANSPKGSEEPPGF
TEKNIEYLNGDKEDTYIRPNSKKEFLQQLLIKRNGFYFCTECQYSSKYYKPFYSHCNRSH
IPKIQPKFEDAKFLLCCTECPFVTVSTNGFKIHCALKHGKYKAKSVKKLVALDDPLAITK
FLAFISTTKCDIKRKKALEQYNHYFSANMPEEISNNPPKEDTFSPGKDIIQKEVESADEE
NESVSDNSPDIRCEKCPFRSKTIPKLLKHYKNNHSRLFPKFVTDRVQQDLLDNHIEINMP
KSAISQQWVNGWMNNECTRLIFHPIYKCRVCDFKGGNSYSIHQHFGQIHPKVGCSVGNVQ
VLEDTSIVTSSNTFCLSKGRNLFKCSICADFTCVFMQNMKIHHIENHSDHPLVASNTYPE
ELIKASTLLRCFQCLATFNNMADLLLHVQTQHTELVTNFQMVDSDINSMYVCKQCNMTVD
SLEDLSSHLEIHNNIHAKRFSQHYITCYSCSKCRRVFRGNRYLKHHFSRVHVEITDYKFT
LNDIPQYMLDHGCQDKLPQDLEVASPSQSVVEEEEDLMSDGYDSTSDPDFKVSNSNKRFK
GMQTVQKTGYYCCWCPHFSINASLLHVHLKRVHKKYFTKSKLEAMKHYATDTDLTDDDTE
TENESMDSSEINSAAESDVLPIRVVQTCSHLTWQTKSPEVFKKHVEQKHDEKHPHKCPHC
SKHFICGTVMTMHLRKKHKFLKPGQKQFKPYDNVRTSCTHRNIRTRSPELFKNHVDHHHS
LSAPYHCTMCNSIYVCYNIFSLHIRKKHSIAVTTDLSEYKKEIKYGKNIDTILPTKTYSK
LAIQAPPVNDKIQLKQDKKYSRKSATSTKHYTHSKSVKTEVGQWKCLFCKRFFEDYQQVR
KHTVSVHPTLQLIRCRWCDFLCKTTVQLNNHNRIHRKFIADRMRELRTIWKEQRMNNKIS
INKKRSALQTTLLEPRAKIRKVDSTVHEKKRIEKTKDSPSSVIIPQPKSPSVSSRTSSRE
STPPSIVQKQKARKSIQGITSSTTETETNAVEVQSKRVTLGECYNVSPQGKLICNYCKYE
TTDTTRVMIHLKANHLQTTSLNCEFCFFESQTFETILDHLQLHHKMARNYHAAIGISARF
PPSNKHTPKISSARLSPAPSLPIARKFYKKTRSIYDKMLSNGRWTSSKPSPGFLQSGTSE
KLPPTAVGSKRTLTKGIKCSYCDTRTYSTYDMEIHLKRHEVSMVDPCKFDEHRFMLAELD
DIIDKF
Nucleotide sequence
Length: 4,447
>KH2012:KH.C8.626.v1.A.SL1-1
CTATACAATATAGTGTTATGTATGTTGCCTGGATCTTTTAACATGGACTGCAGTGGTGGA
ATTTTGGGACAAATATTCTCAGAAAATGGCTTTGATAACTCAATGGAAAGTAACAGTGAC
ATGAAACAGGACAAGTTTGTCAAAGGGTTTACACACCTTCAGGAAAACATATTTCCTGAT
GTGCACACTTTGATTCAAAGTTGTTCAGATCAACTTTGTAAAGTTGAGTCTTTCACAGTA
GAGAATGGTCAGGATGGTCTTTGTAATCAATCTACACCACAAGCTACTGCTTCTTTAAGA
ATGTCAAATGGGCACAGTTATGCCAACTCTCCAAAGGGATCTGAGGAGCCACCAGGGTTT
ACTGAGAAAAACATTGAATATTTGAATGGTGATAAAGAAGATACTTACATACGACCCAAT
TCGAAAAAGGAGTTTTTGCAGCAGTTGCTCATTAAAAGAAATGGTTTTTATTTCTGCACA
GAGTGTCAATACAGTAGCAAATACTACAAACCATTTTACAGTCATTGTAATAGAAGTCAT
ATACCCAAAATACAACCTAAATTTGAGGATGCCAAGTTTTTGTTATGTTGTACTGAATGC
CCCTTTGTGACTGTTAGCACAAATGGTTTTAAAATTCACTGTGCATTGAAACATGGAAAA
TATAAAGCTAAATCTGTGAAAAAATTAGTGGCACTCGATGATCCGTTGGCTATCACTAAA
TTTTTGGCTTTCATTTCCACTACCAAATGTGATATAAAACGCAAAAAAGCTTTGGAACAA
TACAACCACTATTTCTCAGCTAATATGCCAGAGGAAATATCAAACAATCCCCCTAAAGAA
GATACATTTTCACCTGGAAAAGATATTATTCAGAAAGAGGTGGAATCTGCAGATGAGGAA
AATGAGAGTGTATCTGACAACAGCCCAGATATCAGGTGTGAGAAATGTCCTTTTCGTTCA
AAAACCATTCCAAAACTTTTGAAACATTACAAGAACAACCACAGTAGGTTGTTTCCAAAA
TTTGTTACTGATAGGGTTCAGCAAGATCTGTTGGATAATCATATTGAAATAAACATGCCC
AAGTCAGCTATTTCACAACAGTGGGTAAATGGATGGATGAATAATGAATGCACCCGGCTT
ATTTTTCATCCTATTTACAAATGCAGAGTTTGTGATTTTAAAGGTGGAAACTCATACTCG
ATACATCAACACTTTGGGCAAATTCACCCCAAAGTTGGATGCTCTGTTGGTAACGTACAA
GTACTTGAAGACACCAGCATCGTGACTTCTTCAAACACATTTTGCCTCAGCAAAGGCAGG
AACTTGTTCAAGTGTTCAATATGTGCAGACTTCACTTGTGTTTTCATGCAAAACATGAAA
ATTCATCACATAGAAAATCACTCTGACCACCCATTAGTTGCAAGCAATACGTACCCAGAA
GAACTTATCAAAGCGTCCACTCTACTTCGCTGTTTTCAATGTTTAGCAACCTTTAATAAC
ATGGCAGATTTATTGTTACATGTTCAAACACAACACACTGAGTTGGTAACAAACTTCCAA
ATGGTAGACAGTGATATCAACTCTATGTATGTCTGTAAACAATGTAACATGACTGTAGAC
TCTTTGGAGGATCTTTCCTCTCACTTAGAAATACACAACAACATTCACGCTAAAAGATTT
TCCCAGCATTACATTACTTGTTATTCGTGTTCAAAGTGCAGAAGAGTCTTTCGTGGCAAT
AGATACTTAAAACACCACTTCAGTCGTGTTCATGTTGAAATAACTGACTATAAGTTTACT
TTGAATGACATTCCACAGTACATGCTAGACCATGGGTGCCAAGATAAACTGCCACAGGAT
TTAGAAGTTGCCTCTCCATCCCAGAGTGTTGTAGAAGAAGAAGAAGATCTTATGTCTGAT
GGTTATGATTCTACAAGTGATCCAGACTTTAAGGTGTCTAATAGTAATAAGCGATTCAAG
GGAATGCAGACAGTGCAAAAAACTGGCTATTATTGTTGCTGGTGTCCACATTTTAGTATT
AACGCTTCTCTTTTACACGTTCACCTAAAACGGGTTCATAAAAAATATTTTACAAAGTCA
AAACTTGAAGCAATGAAGCATTATGCAACTGACACTGATTTAACAGATGATGATACAGAA
ACTGAGAATGAGAGTATGGATTCATCAGAAATTAATTCAGCCGCAGAATCTGATGTGTTA
CCTATTAGAGTTGTTCAAACATGCTCTCATCTCACTTGGCAAACAAAAAGCCCAGAAGTA
TTCAAAAAGCATGTGGAACAAAAACATGATGAGAAGCATCCCCACAAATGTCCCCATTGC
TCAAAGCACTTTATCTGCGGCACAGTAATGACAATGCACCTGCGTAAAAAGCACAAGTTT
TTAAAACCTGGCCAAAAGCAGTTCAAACCATATGATAATGTGCGCACGAGCTGCACTCAT
CGTAACATTCGCACAAGAAGTCCAGAACTTTTTAAAAATCATGTTGATCACCACCACAGC
TTGTCAGCCCCTTACCACTGCACAATGTGCAACAGTATATACGTGTGCTACAACATATTT
TCACTGCATATTCGTAAAAAGCATTCCATTGCTGTAACAACTGATTTAAGTGAGTACAAA
AAAGAAATCAAATATGGGAAAAATATAGATACCATATTACCTACAAAAACTTACTCCAAA
CTCGCAATACAAGCCCCACCTGTCAACGATAAGATTCAATTAAAACAAGATAAGAAATAT
TCAAGAAAAAGTGCAACCTCAACAAAGCATTACACTCATTCAAAGAGTGTGAAAACAGAA
GTTGGACAATGGAAATGTTTATTCTGCAAAAGGTTTTTCGAAGATTATCAGCAAGTTAGG
AAGCACACAGTTAGCGTGCATCCAACATTGCAGTTGATCAGATGCAGATGGTGTGATTTC
TTGTGCAAAACAACAGTGCAGCTCAACAATCATAACAGGATCCACAGGAAGTTCATTGCC
GACCGTATGAGAGAATTAAGAACCATATGGAAAGAACAACGAATGAATAACAAAATCAGC
ATCAACAAGAAAAGATCTGCTTTACAAACCACATTGTTGGAGCCCAGGGCAAAAATTAGA
AAGGTTGACTCAACTGTACATGAAAAGAAAAGAATTGAAAAAACAAAAGATTCTCCAAGT
TCTGTCATTATTCCACAGCCGAAATCACCATCTGTTTCATCACGCACAAGTTCCCGGGAG
TCAACACCCCCTTCTATTGTACAGAAACAAAAAGCTAGAAAAAGTATTCAAGGAATAACA
TCAAGCACAACTGAAACCGAGACCAATGCTGTAGAAGTTCAAAGCAAAAGAGTGACTTTA
GGTGAATGCTACAATGTTTCACCCCAAGGGAAGCTTATTTGCAACTACTGCAAATATGAA
ACGACGGACACCACTCGAGTTATGATTCATTTAAAAGCTAACCATCTTCAAACAACTTCG
TTGAATTGCGAGTTTTGCTTTTTTGAGTCGCAAACTTTCGAAACGATTCTTGATCACCTT
CAATTGCATCACAAGATGGCAAGAAACTATCATGCTGCGATCGGAATCTCTGCACGTTTC
CCACCGAGCAATAAACACACGCCAAAGATCTCAAGCGCAAGATTGTCTCCCGCACCGTCT
TTGCCAATTGCAAGGAAGTTCTACAAGAAAACAAGATCCATCTATGATAAGATGTTGTCG
AATGGTAGATGGACTTCATCCAAGCCCAGTCCTGGATTTCTTCAGTCTGGAACTTCTGAG
AAATTACCTCCAACCGCCGTTGGAAGTAAGCGTACATTGACGAAAGGAATCAAGTGCTCT
TACTGTGACACTAGAACTTACTCCACGTATGATATGGAAATTCATTTGAAGAGACATGAA
GTGTCCATGGTGGATCCGTGTAAATTCGACGAGCATAGATTTATGTTAGCCGAATTAGAC
GACATAATTGACAAGTTTTAACCGAGAAAAACAATTGCCAAAATTATTTTTGTTAGAACT
GCTGCTGAACTAAAATATTGCAGTTTTTCATGTATTGTTTTATATCATGTTAGATCTCGT
TTAAAGTTTTACTTGAACCTGACCTCGCGACTGTTACCATTGTACAGTAAATTGCGTTTC
AATTTGCCTTTATAACGGCATAGTTTTTACACCAATGTTTTTACAACTCGTATACCCCCG
CACTAAATACTCTCACAGCCTGACTTGTAAATAATTATCGCCTTTTGCCCGAGCTAAATC
TAAATGATGTTTGCTTACGATTTTGTACAGTTTCGTATTTTTATTACGTTTTTAATGTTT
TAGTAATTATGCATGGAATAATCATTTTTATGAACATATACTAAACTAAAACTAGTGCGC
CTAATTTTACTGGGTTGGAAAGAATATCGTTATAAAAAAATGGAACCGTAAATGCGAACG
TTCTTAC
| SMART |
Znf_C2H2_type (IPR013087) - T[157-180] 13.0 - T[195-218] 6.2 - T[311-334] 0.12 - T[386-409] 4.8 - T[443-467] 32.0 - T[489-512] 0.19 - T[530-552] 0.089 - T[568-591] 0.33 - T[670-693] 12.0 - T[746-769] 180.0 - T[775-798] 6.1 - T[845-868] 12.0 - T[944-967] 1.0 - T[973-995] 0.1 - T[1132-1155] 2.2 - T[1161-1183] 11.0 - T[1277-1299] 0.18 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[491-512] . - T[532-552] . - T[570-591] . - T[777-798] . - T[847-868] . - T[946-967] . - T[975-995] . |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[530-557] 8.85 - T[568-591] 9.66 - T[775-803] 10.346 |
| Protein Name | Identity | Bit Score | e-value |
|---|