- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Molecular Tool 'Moocci.Tbx6-r.b>Cirobu.Lhx3/4' >
- Transcript 'KH2012:KH.C5.544.v1....' >
- Transcript 'KH2012:KH.C11.151.v2...' >
- Transcript 'KH2012:KH.C8.626.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.626.v1.A.SL4-1
Possible name(s)
CTCF; CTCFL; ZNF317
Gene model
Location
KhC8 [2,130,274 / 2,138,880]
Amino acid sequence
Length: 1,346
>KH.C8.626.v1.A.SL4-1
KFDDVSLYRASNHNLYSFLKLYNIVLCMLPGSFNMDCSGGILGQIFSENGFDNSMESNSD
MKQDKFVKGFTHLQENIFPDVHTLIQSCSDQLCKVESFTVENGQDGLCNQSTPQATASLR
MSNGHSYANSPKGSEEPPGFTEKNIEYLNGDKEDTYIRPNSKKEFLQQLLIKRNGFYFCT
ECQYSSKYYKPFYSHCNRSHIPKIQPKFEDAKFLLCCTECPFVTVSTNGFKIHCALKHGK
YKAKSVKKLVALDDPLAITKFLAFISTTKCDIKRKKALEQYNHYFSANMPEEISNNPPKE
DTFSPGKDIIQKEVESADEENESVSDNSPDIRCEKCPFRSKTIPKLLKHYKNNHSRLFPK
FVTDRVQQDLLDNHIEINMPKSAISQQWVNGWMNNECTRLIFHPIYKCRVCDFKGGNSYS
IHQHFGQIHPKVGCSVGNVQVLEDTSIVTSSNTFCLSKGRNLFKCSICADFTCVFMQNMK
IHHIENHSDHPLVASNTYPEELIKASTLLRCFQCLATFNNMADLLLHVQTQHTELVTNFQ
MVDSDINSMYVCKQCNMTVDSLEDLSSHLEIHNNIHAKRFSQHYITCYSCSKCRRVFRGN
RYLKHHFSRVHVEITDYKFTLNDIPQYMLDHGCQDKLPQDLEVASPSQSVVEEEEDLMSD
GYDSTSDPDFKVSNSNKRFKGMQTVQKTGYYCCWCPHFSINASLLHVHLKRVHKKYFTKS
KLEAMKHYATDTDLTDDDTETENESMDSSEINSAAESDVLPIRVVQTCSHLTWQTKSPEV
FKKHVEQKHDEKHPHKCPHCSKHFICGTVMTMHLRKKHKFLKPGQKQFKPYDNVRTSCTH
RNIRTRSPELFKNHVDHHHSLSAPYHCTMCNSIYVCYNIFSLHIRKKHSIAVTTDLSEYK
KEIKYGKNIDTILPTKTYSKLAIQAPPVNDKIQLKQDKKYSRKSATSTKHYTHSKSVKTE
VGQWKCLFCKRFFEDYQQVRKHTVSVHPTLQLIRCRWCDFLCKTTVQLNNHNRIHRKFIA
DRMRELRTIWKEQRMNNKISINKKRSALQTTLLEPRAKIRKVDSTVHEKKRIEKTKDSPS
SVIIPQPKSPSVSSRTSSRESTPPSIVQKQKARKSIQGITSSTTETETNAVEVQSKRVTL
GECYNVSPQGKLICNYCKYETTDTTRVMIHLKANHLQTTSLNCEFCFFESQTFETILDHL
QLHHKMARNYHAAIGISARFPPSNKHTPKISSARLSPAPSLPIARKFYKKTRSIYDKMLS
NGRWTSSKPSPGFLQSGTSEKLPPTAVGSKRTLTKGIKCSYCDTRTYSTYDMEIHLKRHE
VSMVDPCKFDEHRFMLAELDDIIDKF
Nucleotide sequence
Length: 4,701
>KH2012:KH.C8.626.v1.A.SL4-1
TGTCTGGGTCGTAATGGTGAACAGATTAAAGAAAGATCGGTAATGCTGTTACATCATGTT
CAGTAACCATTGCGCAGTTTATTTCGCAAATAAAGTAAATCTTTAACAAAGTTATTGAAT
GTATTTGACACTTGTCAAATAAACAAACATTGTCAAGTGCTGGGTTTGTCAACTTAAACC
AATATACGATCTGAAAGTTTGATGACGTCAGTCTTTATCGTGCATCAAATCACAATCTTT
ATTCGTTTCTAAAGCTATACAATATAGTGTTATGTATGTTGCCTGGATCTTTTAACATGG
ACTGCAGTGGTGGAATTTTGGGACAAATATTCTCAGAAAATGGCTTTGATAACTCAATGG
AAAGTAACAGTGACATGAAACAGGACAAGTTTGTCAAAGGGTTTACACACCTTCAGGAAA
ACATATTTCCTGATGTGCACACTTTGATTCAAAGTTGTTCAGATCAACTTTGTAAAGTTG
AGTCTTTCACAGTAGAGAATGGTCAGGATGGTCTTTGTAATCAATCTACACCACAAGCTA
CTGCTTCTTTAAGAATGTCAAATGGGCACAGTTATGCCAACTCTCCAAAGGGATCTGAGG
AGCCACCAGGGTTTACTGAGAAAAACATTGAATATTTGAATGGTGATAAAGAAGATACTT
ACATACGACCCAATTCGAAAAAGGAGTTTTTGCAGCAGTTGCTCATTAAAAGAAATGGTT
TTTATTTCTGCACAGAGTGTCAATACAGTAGCAAATACTACAAACCATTTTACAGTCATT
GTAATAGAAGTCATATACCCAAAATACAACCTAAATTTGAGGATGCCAAGTTTTTGTTAT
GTTGTACTGAATGCCCCTTTGTGACTGTTAGCACAAATGGTTTTAAAATTCACTGTGCAT
TGAAACATGGAAAATATAAAGCTAAATCTGTGAAAAAATTAGTGGCACTCGATGATCCGT
TGGCTATCACTAAATTTTTGGCTTTCATTTCCACTACCAAATGTGATATAAAACGCAAAA
AAGCTTTGGAACAATACAACCACTATTTCTCAGCTAATATGCCAGAGGAAATATCAAACA
ATCCCCCTAAAGAAGATACATTTTCACCTGGAAAAGATATTATTCAGAAAGAGGTGGAAT
CTGCAGATGAGGAAAATGAGAGTGTATCTGACAACAGCCCAGATATCAGGTGTGAGAAAT
GTCCTTTTCGTTCAAAAACCATTCCAAAACTTTTGAAACATTACAAGAACAACCACAGTA
GGTTGTTTCCAAAATTTGTTACTGATAGGGTTCAGCAAGATCTGTTGGATAATCATATTG
AAATAAACATGCCCAAGTCAGCTATTTCACAACAGTGGGTAAATGGATGGATGAATAATG
AATGCACCCGGCTTATTTTTCATCCTATTTACAAATGCAGAGTTTGTGATTTTAAAGGTG
GAAACTCATACTCGATACATCAACACTTTGGGCAAATTCACCCCAAAGTTGGATGCTCTG
TTGGTAACGTACAAGTACTTGAAGACACCAGCATCGTGACTTCTTCAAACACATTTTGCC
TCAGCAAAGGCAGGAACTTGTTCAAGTGTTCAATATGTGCAGACTTCACTTGTGTTTTCA
TGCAAAACATGAAAATTCATCACATAGAAAATCACTCTGACCACCCATTAGTTGCAAGCA
ATACGTACCCAGAAGAACTTATCAAAGCGTCCACTCTACTTCGCTGTTTTCAATGTTTAG
CAACCTTTAATAACATGGCAGATTTATTGTTACATGTTCAAACACAACACACTGAGTTGG
TAACAAACTTCCAAATGGTAGACAGTGATATCAACTCTATGTATGTCTGTAAACAATGTA
ACATGACTGTAGACTCTTTGGAGGATCTTTCCTCTCACTTAGAAATACACAACAACATTC
ACGCTAAAAGATTTTCCCAGCATTACATTACTTGTTATTCGTGTTCAAAGTGCAGAAGAG
TCTTTCGTGGCAATAGATACTTAAAACACCACTTCAGTCGTGTTCATGTTGAAATAACTG
ACTATAAGTTTACTTTGAATGACATTCCACAGTACATGCTAGACCATGGGTGCCAAGATA
AACTGCCACAGGATTTAGAAGTTGCCTCTCCATCCCAGAGTGTTGTAGAAGAAGAAGAAG
ATCTTATGTCTGATGGTTATGATTCTACAAGTGATCCAGACTTTAAGGTGTCTAATAGTA
ATAAGCGATTCAAGGGAATGCAGACAGTGCAAAAAACTGGCTATTATTGTTGCTGGTGTC
CACATTTTAGTATTAACGCTTCTCTTTTACACGTTCACCTAAAACGGGTTCATAAAAAAT
ATTTTACAAAGTCAAAACTTGAAGCAATGAAGCATTATGCAACTGACACTGATTTAACAG
ATGATGATACAGAAACTGAGAATGAGAGTATGGATTCATCAGAAATTAATTCAGCCGCAG
AATCTGATGTGTTACCTATTAGAGTTGTTCAAACATGCTCTCATCTCACTTGGCAAACAA
AAAGCCCAGAAGTATTCAAAAAGCATGTGGAACAAAAACATGATGAGAAGCATCCCCACA
AATGTCCCCATTGCTCAAAGCACTTTATCTGCGGCACAGTAATGACAATGCACCTGCGTA
AAAAGCACAAGTTTTTAAAACCTGGCCAAAAGCAGTTCAAACCATATGATAATGTGCGCA
CGAGCTGCACTCATCGTAACATTCGCACAAGAAGTCCAGAACTTTTTAAAAATCATGTTG
ATCACCACCACAGCTTGTCAGCCCCTTACCACTGCACAATGTGCAACAGTATATACGTGT
GCTACAACATATTTTCACTGCATATTCGTAAAAAGCATTCCATTGCTGTAACAACTGATT
TAAGTGAGTACAAAAAAGAAATCAAATATGGGAAAAATATAGATACCATATTACCTACAA
AAACTTACTCCAAACTCGCAATACAAGCCCCACCTGTCAACGATAAGATTCAATTAAAAC
AAGATAAGAAATATTCAAGAAAAAGTGCAACCTCAACAAAGCATTACACTCATTCAAAGA
GTGTGAAAACAGAAGTTGGACAATGGAAATGTTTATTCTGCAAAAGGTTTTTCGAAGATT
ATCAGCAAGTTAGGAAGCACACAGTTAGCGTGCATCCAACATTGCAGTTGATCAGATGCA
GATGGTGTGATTTCTTGTGCAAAACAACAGTGCAGCTCAACAATCATAACAGGATCCACA
GGAAGTTCATTGCCGACCGTATGAGAGAATTAAGAACCATATGGAAAGAACAACGAATGA
ATAACAAAATCAGCATCAACAAGAAAAGATCTGCTTTACAAACCACATTGTTGGAGCCCA
GGGCAAAAATTAGAAAGGTTGACTCAACTGTACATGAAAAGAAAAGAATTGAAAAAACAA
AAGATTCTCCAAGTTCTGTCATTATTCCACAGCCGAAATCACCATCTGTTTCATCACGCA
CAAGTTCCCGGGAGTCAACACCCCCTTCTATTGTACAGAAACAAAAAGCTAGAAAAAGTA
TTCAAGGAATAACATCAAGCACAACTGAAACCGAGACCAATGCTGTAGAAGTTCAAAGCA
AAAGAGTGACTTTAGGTGAATGCTACAATGTTTCACCCCAAGGGAAGCTTATTTGCAACT
ACTGCAAATATGAAACGACGGACACCACTCGAGTTATGATTCATTTAAAAGCTAACCATC
TTCAAACAACTTCGTTGAATTGCGAGTTTTGCTTTTTTGAGTCGCAAACTTTCGAAACGA
TTCTTGATCACCTTCAATTGCATCACAAGATGGCAAGAAACTATCATGCTGCGATCGGAA
TCTCTGCACGTTTCCCACCGAGCAATAAACACACGCCAAAGATCTCAAGCGCAAGATTGT
CTCCCGCACCGTCTTTGCCAATTGCAAGGAAGTTCTACAAGAAAACAAGATCCATCTATG
ATAAGATGTTGTCGAATGGTAGATGGACTTCATCCAAGCCCAGTCCTGGATTTCTTCAGT
CTGGAACTTCTGAGAAATTACCTCCAACCGCCGTTGGAAGTAAGCGTACATTGACGAAAG
GAATCAAGTGCTCTTACTGTGACACTAGAACTTACTCCACGTATGATATGGAAATTCATT
TGAAGAGACATGAAGTGTCCATGGTGGATCCGTGTAAATTCGACGAGCATAGATTTATGT
TAGCCGAATTAGACGACATAATTGACAAGTTTTAACCGAGAAAAACAATTGCCAAAATTA
TTTTTGTTAGAACTGCTGCTGAACTAAAATATTGCAGTTTTTCATGTATTGTTTTATATC
ATGTTAGATCTCGTTTAAAGTTTTACTTGAACCTGACCTCGCGACTGTTACCATTGTACA
GTAAATTGCGTTTCAATTTGCCTTTATAACGGCATAGTTTTTACACCAATGTTTTTACAA
CTCGTATACCCCCGCACTAAATACTCTCACAGCCTGACTTGTAAATAATTATCGCCTTTT
GCCCGAGCTAAATCTAAATGATGTTTGCTTACGATTTTGTACAGTTTCGTATTTTTATTA
CGTTTTTAATGTTTTAGTAATTATGCATGGAATAATCATTTTTATGAACATATACTAAAC
TAAAACTAGTGCGCCTAATTTTACTGGGTTGGAAAGAATATCGTTATAAAAAAATGGAAC
CGTAAATGCGAACGTTCTTAC
| SMART |
Znf_C2H2_type (IPR013087) - T[177-200] 13.0 - T[215-238] 6.2 - T[331-354] 0.12 - T[406-429] 4.8 - T[463-487] 32.0 - T[509-532] 0.19 - T[550-572] 0.089 - T[588-611] 0.33 - T[690-713] 12.0 - T[766-789] 180.0 - T[795-818] 6.1 - T[865-888] 12.0 - T[964-987] 1.0 - T[993-1015] 0.1 - T[1152-1175] 2.2 - T[1181-1203] 11.0 - T[1297-1319] 0.18 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[511-532] . - T[552-572] . - T[590-611] . - T[797-818] . - T[867-888] . - T[966-987] . - T[995-1015] . |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[550-577] 8.85 - T[588-611] 9.66 - T[795-823] 10.346 |
| Protein Name | Identity | Bit Score | e-value |
|---|