- Transcript 'KH2012:KH.C8.626.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.626.v1.R.ND2-1
Possible name(s)
CTCF; CTCFL; ZNF317
Gene model
Location
KhC8 [2,130,280 / 2,138,880]
Amino acid sequence
Length: 1,346
>KH.C8.626.v1.R.ND2-1
KFDDVSLYRASNHNLYSFLKLYNIVLCMLPGSFNMDCSGGILGQIFSENGFDNSMESNSD
MKQDKFVKGFTHLQENIFPDVHTLIQSCSDQLCKVESFTVENGQDGLCNQSTPQATASLR
MSNGHSYANSPKGSEEPPGFTEKNIEYLNGDKEDTYIRPNSKKEFLQQLLIKRNGFYFCT
ECQYSSKYYKPFYSHCNRSHIPKIQPKFEDAKFLLCCTECPFVTVSTNGFKIHCALKHGK
YKAKSVKKLVALDDPLAITKFLAFISTTKCDIKRKKALEQYNHYFSANMPEEISNNPPKE
DTFSPGKDIIQKEVESADEENESVSDNSPDIRCEKCPFRSKTIPKLLKHYKNNHSRLFPK
FVTDRVQQDLLDNHIEINMPKSAISQQWVNGWMNNECTRLIFHPIYKCRVCDFKGGNSYS
IHQHFGQIHPKVGCSVGNVQVLEDTSIVTSSNTFCLSKGRNLFKCSICADFTCVFMQNMK
IHHIENHSDHPLVASNTYPEELIKASTLLRCFQCLATFNNMADLLLHVQTQHTELVTNFQ
MVDSDINSMYVCKQCNMTVDSLEDLSSHLEIHNNIHAKRFSQHYITCYSCSKCRRVFRGN
RYLKHHFSRVHVEITDYKFTLNDIPQYMLDHGCQDKLPQDLEVASPSQSVVEEEEDLMSD
GYDSTSDPDFKVSNSNKRFKGMQTVQKTGYYCCWCPHFSINASLLHVHLKRVHKKYFTKS
KLEAMKHYATDTDLTDDDTETENESMDSSEINSAAESDVLPIRVVQTCSHLTWQTKSPEV
FKKHVEQKHDEKHPHKCPHCSKHFICGTVMTMHLRKKHKFLKPGQKQFKPYDNVRTSCTH
RNIRTRSPELFKNHVDHHHSLSAPYHCTMCNSIYVCYNIFSLHIRKKHSIAVTTDLSEYK
KEIKYGKNIDTILPTKTYSKLAIQAPPVNDKIQLKQDKKYSRKSATSTKHYTHSKSVKTE
VGQWKCLFCKRFFEDYQQVRKHTVSVHPTLQLIRCRWCDFLCKTTVQLNNHNRIHRKFIA
DRMRELRTIWKEQRMNNKISINKKRSALQTTLLEPRAKIRKVDSTVHEKKRIEKTKDSPS
SVIIPQPKSPSVSSRTSSRESTPPSIVQKQKARKSIQGITSSTTETETNAVEVQSKRVTL
GECYNVSPQGKLICNYCKYETTDTTRVMIHLKANHLQTTSLNCEFCFFESQTFETILDHL
QLHHKMARNYHAAIGISARFPPSNKHTPKISSARLSPAPSLPIARKFYKKTRSIYDKMLS
NGRWTSSKPSPGFLQSGTSEKLPPTAVGSKRTLTKGIKCSYCDTRTYSTYDMEIHLKRHE
VSMVDPCKFDEHRFMLAELDDIIDKF
Nucleotide sequence
Length: 4,695
>KH2012:KH.C8.626.v1.R.ND2-1
GGTCGTAATGGTGAACAGATTAAAGAAAGATCGGTAATGCTGTTACATCATGTTCAGTAA
CCATTGCGCAGTTTATTTCGCAAATAAAGTAAATCTTTAACAAAGTTATTGAATGTATTT
GACACTTGTCAAATAAACAAACATTGTCAAGTGCTGGGTTTGTCAACTTAAACCAATATA
CGATCTGAAAGTTTGATGACGTCAGTCTTTATCGTGCATCAAATCACAATCTTTATTCGT
TTCTAAAGCTATACAATATAGTGTTATGTATGTTGCCTGGATCTTTTAACATGGACTGCA
GTGGTGGAATTTTGGGACAAATATTCTCAGAAAATGGCTTTGATAACTCAATGGAAAGTA
ACAGTGACATGAAACAGGACAAGTTTGTCAAAGGGTTTACACACCTTCAGGAAAACATAT
TTCCTGATGTGCACACTTTGATTCAAAGTTGTTCAGATCAACTTTGTAAAGTTGAGTCTT
TCACAGTAGAGAATGGTCAGGATGGTCTTTGTAATCAATCTACACCACAAGCTACTGCTT
CTTTAAGAATGTCAAATGGGCACAGTTATGCCAACTCTCCAAAGGGATCTGAGGAGCCAC
CAGGGTTTACTGAGAAAAACATTGAATATTTGAATGGTGATAAAGAAGATACTTACATAC
GACCCAATTCGAAAAAGGAGTTTTTGCAGCAGTTGCTCATTAAAAGAAATGGTTTTTATT
TCTGCACAGAGTGTCAATACAGTAGCAAATACTACAAACCATTTTACAGTCATTGTAATA
GAAGTCATATACCCAAAATACAACCTAAATTTGAGGATGCCAAGTTTTTGTTATGTTGTA
CTGAATGCCCCTTTGTGACTGTTAGCACAAATGGTTTTAAAATTCACTGTGCATTGAAAC
ATGGAAAATATAAAGCTAAATCTGTGAAAAAATTAGTGGCACTCGATGATCCGTTGGCTA
TCACTAAATTTTTGGCTTTCATTTCCACTACCAAATGTGATATAAAACGCAAAAAAGCTT
TGGAACAATACAACCACTATTTCTCAGCTAATATGCCAGAGGAAATATCAAACAATCCCC
CTAAAGAAGATACATTTTCACCTGGAAAAGATATTATTCAGAAAGAGGTGGAATCTGCAG
ATGAGGAAAATGAGAGTGTATCTGACAACAGCCCAGATATCAGGTGTGAGAAATGTCCTT
TTCGTTCAAAAACCATTCCAAAACTTTTGAAACATTACAAGAACAACCACAGTAGGTTGT
TTCCAAAATTTGTTACTGATAGGGTTCAGCAAGATCTGTTGGATAATCATATTGAAATAA
ACATGCCCAAGTCAGCTATTTCACAACAGTGGGTAAATGGATGGATGAATAATGAATGCA
CCCGGCTTATTTTTCATCCTATTTACAAATGCAGAGTTTGTGATTTTAAAGGTGGAAACT
CATACTCGATACATCAACACTTTGGGCAAATTCACCCCAAAGTTGGATGCTCTGTTGGTA
ACGTACAAGTACTTGAAGACACCAGCATCGTGACTTCTTCAAACACATTTTGCCTCAGCA
AAGGCAGGAACTTGTTCAAGTGTTCAATATGTGCAGACTTCACTTGTGTTTTCATGCAAA
ACATGAAAATTCATCACATAGAAAATCACTCTGACCACCCATTAGTTGCAAGCAATACGT
ACCCAGAAGAACTTATCAAAGCGTCCACTCTACTTCGCTGTTTTCAATGTTTAGCAACCT
TTAATAACATGGCAGATTTATTGTTACATGTTCAAACACAACACACTGAGTTGGTAACAA
ACTTCCAAATGGTAGACAGTGATATCAACTCTATGTATGTCTGTAAACAATGTAACATGA
CTGTAGACTCTTTGGAGGATCTTTCCTCTCACTTAGAAATACACAACAACATTCACGCTA
AAAGATTTTCCCAGCATTACATTACTTGTTATTCGTGTTCAAAGTGCAGAAGAGTCTTTC
GTGGCAATAGATACTTAAAACACCACTTCAGTCGTGTTCATGTTGAAATAACTGACTATA
AGTTTACTTTGAATGACATTCCACAGTACATGCTAGACCATGGGTGCCAAGATAAACTGC
CACAGGATTTAGAAGTTGCCTCTCCATCCCAGAGTGTTGTAGAAGAAGAAGAAGATCTTA
TGTCTGATGGTTATGATTCTACAAGTGATCCAGACTTTAAGGTGTCTAATAGTAATAAGC
GATTCAAGGGAATGCAGACAGTGCAAAAAACTGGCTATTATTGTTGCTGGTGTCCACATT
TTAGTATTAACGCTTCTCTTTTACACGTTCACCTAAAACGGGTTCATAAAAAATATTTTA
CAAAGTCAAAACTTGAAGCAATGAAGCATTATGCAACTGACACTGATTTAACAGATGATG
ATACAGAAACTGAGAATGAGAGTATGGATTCATCAGAAATTAATTCAGCCGCAGAATCTG
ATGTGTTACCTATTAGAGTTGTTCAAACATGCTCTCATCTCACTTGGCAAACAAAAAGCC
CAGAAGTATTCAAAAAGCATGTGGAACAAAAACATGATGAGAAGCATCCCCACAAATGTC
CCCATTGCTCAAAGCACTTTATCTGCGGCACAGTAATGACAATGCACCTGCGTAAAAAGC
ACAAGTTTTTAAAACCTGGCCAAAAGCAGTTCAAACCATATGATAATGTGCGCACGAGCT
GCACTCATCGTAACATTCGCACAAGAAGTCCAGAACTTTTTAAAAATCATGTTGATCACC
ACCACAGCTTGTCAGCCCCTTACCACTGCACAATGTGCAACAGTATATACGTGTGCTACA
ACATATTTTCACTGCATATTCGTAAAAAGCATTCCATTGCTGTAACAACTGATTTAAGTG
AGTACAAAAAAGAAATCAAATATGGGAAAAATATAGATACCATATTACCTACAAAAACTT
ACTCCAAACTCGCAATACAAGCCCCACCTGTCAACGATAAGATTCAATTAAAACAAGATA
AGAAATATTCAAGAAAAAGTGCAACCTCAACAAAGCATTACACTCATTCAAAGAGTGTGA
AAACAGAAGTTGGACAATGGAAATGTTTATTCTGCAAAAGGTTTTTCGAAGATTATCAGC
AAGTTAGGAAGCACACAGTTAGCGTGCATCCAACATTGCAGTTGATCAGATGCAGATGGT
GTGATTTCTTGTGCAAAACAACAGTGCAGCTCAACAATCATAACAGGATCCACAGGAAGT
TCATTGCCGACCGTATGAGAGAATTAAGAACCATATGGAAAGAACAACGAATGAATAACA
AAATCAGCATCAACAAGAAAAGATCTGCTTTACAAACCACATTGTTGGAGCCCAGGGCAA
AAATTAGAAAGGTTGACTCAACTGTACATGAAAAGAAAAGAATTGAAAAAACAAAAGATT
CTCCAAGTTCTGTCATTATTCCACAGCCGAAATCACCATCTGTTTCATCACGCACAAGTT
CCCGGGAGTCAACACCCCCTTCTATTGTACAGAAACAAAAAGCTAGAAAAAGTATTCAAG
GAATAACATCAAGCACAACTGAAACCGAGACCAATGCTGTAGAAGTTCAAAGCAAAAGAG
TGACTTTAGGTGAATGCTACAATGTTTCACCCCAAGGGAAGCTTATTTGCAACTACTGCA
AATATGAAACGACGGACACCACTCGAGTTATGATTCATTTAAAAGCTAACCATCTTCAAA
CAACTTCGTTGAATTGCGAGTTTTGCTTTTTTGAGTCGCAAACTTTCGAAACGATTCTTG
ATCACCTTCAATTGCATCACAAGATGGCAAGAAACTATCATGCTGCGATCGGAATCTCTG
CACGTTTCCCACCGAGCAATAAACACACGCCAAAGATCTCAAGCGCAAGATTGTCTCCCG
CACCGTCTTTGCCAATTGCAAGGAAGTTCTACAAGAAAACAAGATCCATCTATGATAAGA
TGTTGTCGAATGGTAGATGGACTTCATCCAAGCCCAGTCCTGGATTTCTTCAGTCTGGAA
CTTCTGAGAAATTACCTCCAACCGCCGTTGGAAGTAAGCGTACATTGACGAAAGGAATCA
AGTGCTCTTACTGTGACACTAGAACTTACTCCACGTATGATATGGAAATTCATTTGAAGA
GACATGAAGTGTCCATGGTGGATCCGTGTAAATTCGACGAGCATAGATTTATGTTAGCCG
AATTAGACGACATAATTGACAAGTTTTAACCGAGAAAAACAATTGCCAAAATTATTTTTG
TTAGAACTGCTGCTGAACTAAAATATTGCAGTTTTTCATGTATTGTTTTATATCATGTTA
GATCTCGTTTAAAGTTTTACTTGAACCTGACCTCGCGACTGTTACCATTGTACAGTAAAT
TGCGTTTCAATTTGCCTTTATAACGGCATAGTTTTTACACCAATGTTTTTACAACTCGTA
TACCCCCGCACTAAATACTCTCACAGCCTGACTTGTAAATAATTATCGCCTTTTGCCCGA
GCTAAATCTAAATGATGTTTGCTTACGATTTTGTACAGTTTCGTATTTTTATTACGTTTT
TAATGTTTTAGTAATTATGCATGGAATAATCATTTTTATGAACATATACTAAACTAAAAC
TAGTGCGCCTAATTTTACTGGGTTGGAAAGAATATCGTTATAAAAAAATGGAACCGTAAA
TGCGAACGTTCTTAC
| SMART |
Znf_C2H2_type (IPR013087) - T[177-200] 13.0 - T[215-238] 6.2 - T[331-354] 0.12 - T[406-429] 4.8 - T[463-487] 32.0 - T[509-532] 0.19 - T[550-572] 0.089 - T[588-611] 0.33 - T[690-713] 12.0 - T[766-789] 180.0 - T[795-818] 6.1 - T[865-888] 12.0 - T[964-987] 1.0 - T[993-1015] 0.1 - T[1152-1175] 2.2 - T[1181-1203] 11.0 - T[1297-1319] 0.18 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[511-532] . - T[552-572] . - T[590-611] . - T[797-818] . - T[867-888] . - T[966-987] . - T[995-1015] . |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[550-577] 8.85 - T[588-611] 9.66 - T[795-823] 10.346 |
| Protein Name | Identity | Bit Score | e-value |
|---|