- Region 'REG00000212' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C8.640.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.640.v1.A.nonSL5-2
Possible name(s)
SNRNP40; WDR5; WDR5B
Gene model
Location
KhC8 [3,506,355 / 3,508,065]
Amino acid sequence
Length: 155
>KH.C8.640.v1.A.nonSL5-2
DTSESVITGGIDNVIKVWDIRSEKSYIELQGHADTVTGLTVSKDGSFVLSNSMDCTMRKW
DIRPFAPQQRCTNLYMGHKHNFEKNLLRCSWSPDDSKIAAGSSDRDVCVWNATNQQLIYK
LPGHDGSVNDVQFHPFQPIVMSCSSDKQIYLGEIQ
Nucleotide sequence
Length: 1,218
>KH2012:KH.C8.640.v1.A.nonSL5-2
ACGATACATCGGAAAGTGTTATTACTGGTGGAATTGATAACGTTATTAAAGTTTGGGATA
TTCGCTCGGAAAAATCATATATTGAACTCCAAGGACATGCAGACACTGTCACTGGCCTCA
CAGTTAGCAAGGATGGCTCATTCGTTCTATCGAATTCAATGGATTGCACAATGAGGAAAT
GGGATATACGACCATTCGCACCACAACAGAGATGCACTAATCTATACATGGGTCACAAGC
ATAACTTTGAGAAGAATTTGTTAAGGTGCAGCTGGTCTCCAGATGATAGTAAGATAGCTG
CTGGATCTTCGGACAGGGACGTGTGTGTTTGGAACGCTACAAACCAGCAGTTGATTTACA
AGTTACCGGGCCATGATGGCTCAGTGAACGACGTACAATTTCATCCATTTCAACCCATAG
TTATGTCGTGTTCAAGTGACAAACAAATATATCTTGGTGAAATACAATGAACATACTATA
TAGCTGGAAAACTAAATGAATTGCCACATCTGTGCTCGCTGCTACACCATCCTGCATTTT
AAACTCTGAACTTTGTTGTACATATTTTGTAATAATAAAGAATAGAACCATCAACTTGTT
TTTAATTAGTGTTTGGTCAACGTGAAAATGCTAAAAAGGTATCAGCACTTTGCATTACCA
CTCAAATGGTGTTGTATTGCCATACATTTTGTCAGATACAATATCATCATCATAAAGCGT
TTTAATTTTTGTGATCAATATTTCTAACTGGTTTCCATTTTTACCCGAAATTGCAAAAAT
TTCCAAAGTAGGATCTAATAACTTTACTTGATTTACAAACTCAGGAAAATTGTCTGTAGA
CTCTCGTAGGTCCATTTTGTTTGCAACTACAATGCAGGGTCTTTCAGTCAAACTGGTATC
GTAATAATGAAATTCGTTTTGTAAATGGTGTAACTGCATCCAAGGTTCTGGCATTGACAT
ATCCACAATATAAAGCAGAAACCTGCAACGTTCTATATGACGAAGGAAACGAATTCCAAG
TCCTTTGTTTTTGTGCGCTCCTTCAATAATACCAGCAATAGCAACCACATCTCCACCATT
ACCCCCATCTCCCCCACAAGGTCCTCCAAACTCTGTGTTTTTATCCCGGAGGAAAAACGA
TCTTCCGTCTCCCCCAGCTCCTGAAGAGATCCGCATCTTCTTATGATCAATAAACTTCTT
CGCTAATTTCTTTTCCGA
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[1-28] 10.809 - T[29-63] 12.915 - T[90-120] 9.94 - T[121-155] 10.107 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-155] 4.0E-50 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[1-155] 30.875 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[5-151] 4.58E-37 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[6-20] 1.4E-5 - T[48-62] 1.4E-5 - T[98-112] 1.4E-5 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[6-20] . - T[98-112] . |
| SMART |
WD40_repeat (IPR001680) - T[22-61] 3.6E-5 - T[68-111] 2.8E-5 - T[114-153] 5.0E-5 |
| Pfam |
WD40_repeat (IPR001680) - T[28-61] 9.2E-5 - T[71-111] 1.4E-4 - T[116-151] 5.1E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| KTNB1_HUMAN | 32.68 % | 90.5 | 8.37E-22 |
| SNR40_HUMAN | 62.581 % | 224 | 1.03E-73 |
| WDR38_HUMAN | 28.289 % | 76.6 | 2.52E-17 |