- Transcript 'KH2012:KH.C8.640.v2....' >
- Transcript 'KH2012:KH.C8.640.v1....'
Transcript Model
Transcript Id
KH2012:KH.C8.640.v1.R.ND2-2
Possible name(s)
SNRNP40; WDR5; WDR5B
Gene model
Location
KhC8 [3,505,666 / 3,508,065]
Amino acid sequence
Length: 361
>KH.C8.640.v1.R.ND2-2
INTVFIPAYVMSTLTEKRSAELGALAIPSKRPRNEYEVATYENQKSVVAHGPPRTSSLLA
PIMLLTGHEGEIYSSKFHPEGNMIASTGFERLIYLWNVYGECDNFHVIKGGHKGAVLDLQ
FNTDGSNIITASTDKTVGLFDSETGERIKRMKGHNGIVNTCTTARRGDPLVASGSDDCTV
KIWDTRRKGAIKSIQLTYQITAVSFNDTSESVITGGIDNVIKVWDIRSEKSYIELQGHAD
TVTGLTVSKDGSFVLSNSMDCTMRKWDIRPFAPQQRCTNLYMGHKHNFEKNLLRCSWSPD
DSKIAAGSSDRDVCVWNATNQQLIYKLPGHDGSVNDVQFHPFQPIVMSCSSDKQIYLGEI
Q
Nucleotide sequence
Length: 1,907
>KH2012:KH.C8.640.v1.R.ND2-2
TAAATCTTGAGTTGACAATTCTTGCTTTTTAGTATTTTATACTTATAAAGTAACTAGTCT
AAAGCGATACTGAATTAATACTGTCTTTATACCTGCCTATGTAATGTCTACGTTAACGGA
GAAAAGAAGCGCAGAGCTTGGAGCTTTAGCTATTCCATCAAAGCGGCCACGAAATGAATA
CGAAGTCGCAACTTATGAAAATCAGAAATCTGTCGTTGCACATGGCCCGCCTCGAACATC
AAGTCTGCTGGCCCCAATTATGCTACTGACGGGTCATGAGGGGGAAATCTACAGCTCCAA
ATTCCACCCGGAAGGCAATATGATAGCTTCAACTGGCTTTGAAAGGTTAATCTATTTGTG
GAACGTGTATGGTGAATGCGATAACTTTCATGTCATAAAAGGGGGTCATAAGGGAGCTGT
ACTTGATCTACAGTTCAACACAGATGGGTCTAACATTATCACAGCCAGTACTGACAAAAC
TGTTGGTCTTTTTGACTCCGAAACAGGAGAGCGAATAAAACGAATGAAAGGCCATAATGG
TATTGTTAATACTTGCACAACAGCAAGAAGAGGTGACCCATTGGTTGCGTCGGGTAGTGA
TGATTGCACCGTAAAAATATGGGACACTAGACGAAAAGGGGCAATCAAATCAATTCAGTT
AACGTACCAAATTACAGCGGTTTCTTTTAACGATACATCGGAAAGTGTTATTACTGGTGG
AATTGATAACGTTATTAAAGTTTGGGATATTCGCTCGGAAAAATCATATATTGAACTCCA
AGGACATGCAGACACTGTCACTGGCCTCACAGTTAGCAAGGATGGCTCATTCGTTCTATC
GAATTCAATGGATTGCACAATGAGGAAATGGGATATACGACCATTCGCACCACAACAGAG
ATGCACTAATCTATACATGGGTCACAAGCATAACTTTGAGAAGAATTTGTTAAGGTGCAG
CTGGTCTCCAGATGATAGTAAGATAGCTGCTGGATCTTCGGACAGGGACGTGTGTGTTTG
GAACGCTACAAACCAGCAGTTGATTTACAAGTTACCGGGCCATGATGGCTCAGTGAACGA
CGTACAATTTCATCCATTTCAACCCATAGTTATGTCGTGTTCAAGTGACAAACAAATATA
TCTTGGTGAAATACAATGAACATACTATATAGCTGGAAAACTAAATGAATTGCCACATCT
GTGCTCGCTGCTACACCATCCTGCATTTTAAACTCTGAACTTTGTTGTACATATTTTGTA
ATAATAAAGAATAGAACCATCAACTTGTTTTTAATTAGTGTTTGGTCAACGTGAAAATGC
TAAAAAGGTATCAGCACTTTGCATTACCACTCAAATGGTGTTGTATTGCCATACATTTTG
TCAGATACAATATCATCATCATAAAGCGTTTTAATTTTTGTGATCAATATTTCTAACTGG
TTTCCATTTTTACCCGAAATTGCAAAAATTTCCAAAGTAGGATCTAATAACTTTACTTGA
TTTACAAACTCAGGAAAATTGTCTGTAGACTCTCGTAGGTCCATTTTGTTTGCAACTACA
ATGCAGGGTCTTTCAGTCAAACTGGTATCGTAATAATGAAATTCGTTTTGTAAATGGTGT
AACTGCATCCAAGGTTCTGGCATTGACATATCCACAATATAAAGCAGAAACCTGCAACGT
TCTATATGACGAAGGAAACGAATTCCAAGTCCTTTGTTTTTGTGCGCTCCTTCAATAATA
CCAGCAATAGCAACCACATCTCCACCATTACCCCCATCTCCCCCACAAGGTCCTCCAAAC
TCTGTGTTTTTATCCCGGAGGAAAAACGATCTTCCGTCTCCCCCAGCTCCTGAAGAGATC
CGCATCTTCTTATGATCAATAAACTTCTTCGCTAATTTCTTTTCCGA
| SMART |
WD40_repeat (IPR001680) - T[58-97] 2.3E-5 - T[101-141] 2.3E-5 - T[144-184] 1.4E-7 - T[187-225] 0.0092 - T[228-267] 3.6E-5 - T[274-317] 2.8E-5 - T[320-359] 5.0E-5 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[61-361] 3.1E-99 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[61-357] 1.4E-76 |
| Pfam |
WD40_repeat (IPR001680) - T[62-97] 0.0081 - T[105-141] 0.014 - T[148-184] 2.9E-5 - T[200-225] 0.014 - T[234-267] 3.4E-4 - T[277-317] 5.2E-4 - T[322-357] 1.9E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[65-98] 12.313 - T[109-150] 11.879 - T[151-193] 11.277 - T[200-234] 12.079 - T[235-269] 12.915 - T[296-326] 9.94 - T[327-361] 10.107 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[65-361] 50.779 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[171-185] . - T[212-226] . - T[304-318] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[171-185] 7.2E-7 - T[212-226] 7.2E-7 - T[254-268] 7.2E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 28.698 % | 144 | 4.8E-40 |
| WDR5B_HUMAN | 29.341 % | 142 | 1.86E-39 |
| SNR40_HUMAN | 59.012 % | 445 | 2.52E-157 |