- Region 'REG00000210' >
- Transcript 'KH2012:KH.C8.640.v2....' >
- Transcript 'KH2012:KH.C14.176.v1...' >
- Transcript 'KH2012:KH.L65.1.v1.A...' >
- Transcript 'KH2012:KH.C8.640.v2....'
Transcript Model
Transcript Id
KH2012:KH.C8.640.v2.A.nonSL8-1
Possible name(s)
SNRNP40; WDR5; WDR5B
Gene model
Location
KhC8 [3,505,971 / 3,507,661]
Amino acid sequence
Length: 283
>KH.C8.640.v2.A.nonSL8-1
PEGNMIASTGFERLIYLWNVYGECDNFHVIKGGHKGAVLDLQFNTDGSNIITASTDKTVG
LFDSETGERIKRMKGHNGIVNTCTTARRGDPLVASGSDDCTVKIWDTRRKGAIKSIQLTY
QITAVSFNDTSESVITGGIDNVIKVWDIRSEKSYIELQGHADTVTGLTVSKDGSFVLSNS
MDCTMRKWDIRPFAPQQRCTNLYMGHKHNFEKNLLRCSWSPDDSKIAAGSSDRDVCVWNA
TNQQLIYKLPGHDGSVNDVQFHPFQPIVMSCSSDKQIYLGEIQ
Nucleotide sequence
Length: 1,690
>KH2012:KH.C8.640.v2.A.nonSL8-1
ACCCGGAAGGCAATATGATAGCTTCAACTGGCTTTGAAAGGTTAATCTATTTGTGGAACG
TGTATGGTGAATGCGATAACTTTCATGTCATAAAAGGGGGTCATAAGGGAGCTGTACTTG
ATCTACAGTTCAACACAGATGGGTCTAACATTATCACAGCCAGTACTGACAAAACTGTTG
GTCTTTTTGACTCCGAAACAGGAGAGCGAATAAAACGAATGAAAGGCCATAATGGTATTG
TTAATACTTGCACAACAGCAAGAAGAGGTGACCCATTGGTTGCGTCGGGTAGTGATGATT
GCACCGTAAAAATATGGGACACTAGACGAAAAGGGGCAATCAAATCAATTCAGTTAACGT
ACCAAATTACAGCGGTTTCTTTTAACGATACATCGGAAAGTGTTATTACTGGTGGAATTG
ATAACGTTATTAAAGTTTGGGATATTCGCTCGGAAAAATCATATATTGAACTCCAAGGAC
ATGCAGACACTGTCACTGGCCTCACAGTTAGCAAGGATGGCTCATTCGTTCTATCGAATT
CAATGGATTGCACAATGAGGAAATGGGATATACGACCATTCGCACCACAACAGAGATGCA
CTAATCTATACATGGGTCACAAGCATAACTTTGAGAAGAATTTGTTAAGGTGCAGCTGGT
CTCCAGATGATAGTAAGATAGCTGCTGGATCTTCGGACAGGGACGTGTGTGTTTGGAACG
CTACAAACCAGCAGTTGATTTACAAGTTACCGGGCCATGATGGCTCAGTGAACGACGTAC
AATTTCATCCATTTCAACCCATAGTTATGTCGTGTTCAAGTGACAAACAAATATATCTTG
GTGAAATACAATGAACATACTATATAGCTGGAAAACTAAATGAATTGCCACATCTGTGCT
CGCTGCTACACCATCCTGCATTTTAAACTCTGAACTTTGTTGTACATATTTTGTAATAAT
AAAGAATAGAACCATCAACTTGTTTTTAATTAGTGTTTGGTCAACGTGAAAATGCTAAAA
AGGTATCAGCACTTTGCATTACCACTCAAATGGTGTTGTATTGCCATACATTTTGTCAGA
TACAATATCATCATCATAAAGCGTTTTAATTTTTGTGATCAATATTTCTAACTGGTTTCC
ATTTTTACCCGAAATTGCAAAAATTTCCAAAGTAGGATCTAATAACTTTACTTGATTTAC
AAACTCAGGAAAATTGTCTGTAGACTCTCGTAGGTCCATTTTGTTTGCAACTACAATGCA
GGGTCTTTCAGTCAAACTGGTATCGTAATAATGAAATTCGTTTTGTAAATGGTGTAACTG
CATCCAAGGTTCTGGCATTGACATATCCACAATATAAAGCAGAAACCTGCAACGTTCTAT
ATGACGAAGGAAACGAATTCCAAGTCCTTTGTTTTTGTGCGCTCCTTCAATAATACCAGG
TGTGTCTGCTATCGCGATTTGTGTAAAGTCACTGAAATGCATTATCCCAACATGAGGTCT
TAATGTAGTGAAACTATAATCACCAATTGCAGGGGTTGCTCTGGTCAATGCTCGTAGTAT
AGTAGACTTACCAGCATTAGGAAACCCCACCAATCCACCATGAGCAAGTGTTCGCAGTTC
AGCAATGATTACCATACTCTCACCTGGCGTACCTCGAGTGCATTTTTCAGGTGTAGTATT
AGTACTACTC
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-283] 2.2E-93 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[1-283] 47.51 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[1-279] 1.73E-70 |
| SMART |
WD40_repeat (IPR001680) - T[23-63] 2.3E-5 - T[66-106] 1.4E-7 - T[109-147] 0.0092 - T[150-189] 3.6E-5 - T[196-239] 2.8E-5 - T[242-281] 5.0E-5 |
| Pfam |
WD40_repeat (IPR001680) - T[27-63] 0.01 - T[70-106] 2.0E-5 - T[122-147] 0.01 - T[156-189] 2.4E-4 - T[199-239] 3.7E-4 - T[244-279] 1.3E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[31-72] 11.879 - T[73-115] 11.277 - T[122-156] 12.079 - T[157-191] 12.915 - T[218-248] 9.94 - T[249-283] 10.107 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[93-107] 4.0E-7 - T[134-148] 4.0E-7 - T[176-190] 4.0E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[93-107] . - T[134-148] . - T[226-240] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 29.225 % | 127 | 1.52E-34 |
| WDR5B_HUMAN | 30.282 % | 130 | 1.11E-35 |
| SNR40_HUMAN | 62.191 % | 394 | 2.54E-138 |