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  1. Transcript 'KH2012:KH.C8.846.v1....'

Transcript Model

Transcript Id

KH2012:KH.C8.846.v1.A.SL1-1

Possible name(s)

CARHSP1; CSDC2

Location

KhC8 [2,490,893 / 2,492,781]

Sequences

Amino acid sequence

Length: 174

>KH.C8.846.v1.A.SL1-1
NLAGILFKNFSMSADTPNQTPVTKSSPVKITYNRPRISTAGDGDAGYVTPTISPTSEHKF
LVPSPMVTRRTRTYSASRRATEGPVHQGVCQFFSCSQGHGFIKPTDGSSDDLIFMHISDI
EGDYVPLYGDILSYKLTRSPPKMEKFQAVEVRIVTMCIDGKDQHVRWDGTPAKH

Nucleotide sequence

Length: 1,888

>KH2012:KH.C8.846.v1.A.SL1-1
CATTATAGGTGAGTGAAATTTAGCAGGCATTTTATTTAAAAACTTTAGTATGAGTGCTGA
TACACCCAACCAAACTCCAGTTACGAAAAGCAGTCCGGTAAAAATAACTTACAATCGGCC
GAGAATTTCTACCGCCGGTGACGGCGATGCTGGTTATGTTACCCCAACCATATCGCCGAC
TTCTGAACATAAGTTTCTGGTTCCAAGTCCAATGGTAACTCGGCGTACAAGGACATATTC
TGCCAGTCGCAGAGCTACAGAAGGTCCAGTTCATCAAGGTGTATGTCAGTTCTTTTCCTG
CTCACAAGGCCATGGTTTCATCAAGCCTACAGATGGTTCTTCAGATGATTTAATCTTCAT
GCACATATCGGATATTGAGGGTGATTATGTCCCTCTTTATGGCGACATACTCTCATACAA
ATTGACCCGATCCCCCCCTAAAATGGAGAAATTTCAGGCAGTGGAAGTGCGTATCGTTAC
AATGTGCATCGATGGCAAAGATCAACATGTTCGTTGGGACGGAACACCTGCAAAGCATTG
AGAAGCAAAGCAAAAAAACCTCCATTAATGTTTTATTTTTAATGTTCCAGTTTATAATAA
ACAGGACCAAAATGAACTTGCAACAAACTTTATACTTTGGGCCAATGTTGTCCTCATCAA
TTTTAATTTTTCAAGTATTTCTAATTTCCAATGTGGCTTATAATAAGATGTCTTTCACCA
TTCGTTAAAAATAAGTTGATTTAGCCCAGTAACATTGACTCACAGCAATGACTGATTGTC
TCAATAACAATTATGATGCAGCATGTGAGTGCAAACAAGTCTATGAACCTCTGTATGTGA
TAGAACTTAAATTTGCAAACATTTCATGTGTTGTTTTCATACAGTAATGATATATATATA
TGGTATATATATTGATTTAAACCTTGTAGCACAGATGAAATGCCTCAAAACTCCTGAAGT
CTCAGGTTCACTTTGGAAGCTCATTTTTTGTTTATTGGCTCAAATAATAAATAATTCATG
CTGCTAATTTCGCACCCAAATCAAAATCTGTGAACATACAAAATAATTTCAAGAACGAAT
ATATTCTAATTAGCATGGTAGACTTGTTAAAAGAAGTAGCACTGCTGTGCATAATGCCTG
CTATTGATTGTATATACCGGCATCCGAATTAAAATTTAATTACGCTTACCTTTTGTTTCC
ATTTGAAATTCAATTTTGGCACAAATGTAGGTATGGTTTTACAGCAGGCAATGTATGGAT
TTTCTCAACTAAAACAGATTTTAAAAGATTTCTTAGTGCTAATTCCTAATGGACAATTTA
AAATGTGTAAATAATTATGAATTAACTGGATAAATTTAATGTTAAAATGTTTTAACTGAC
TTCTGTTAGTTCTTTTTCCCCTGACAAGTAATCAATAAATCAGTGACAACTGAAACTGCC
CCTTGCGGCATAATCAATTTTGTTCTAAAAACTAGAGAAATGTAGTTCGAAACTATAAGT
TGATTTTGCACTGAAACTCACTAGAGCTTAAAAGAGCATGCTACATCTCTAATTTAAAGT
GAACTACAAATACTACATTTTTCTATTCAATAGTACTAAAACTACCTTCAAAGTAGGCAA
ACAAAAAAACTCCTTGGTTGTTTAAATTTCTGCTTAGTCACCTTTTCCAATGTGTCGCCC
TCTATCTAAAAAACTTCCTAAATTACACTTATGTTTCTGGGAGGTATAAATGAAGCACAA
ATATTTTGAAATGTACCATGTTTTGTTGGTATTAATGAATACGTGTTGCTGGGCTTTACT
ACCAGTCCCATATGAGTTTAAATATCTGATGTACGATGTGGTTTCGGTTGTTTTGGTGAA
TAAATTTAGTTCATGGCGAATCTCAAAA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[77-154] 3.67E-9
Pfam
CSP_DNA-bd (IPR002059) - T[87-124] 5.1E-6
SMART
CSD (IPR011129) - T[87-154] 4.1E-6
CDD
CSP_DNA-bd (IPR002059) - T[87-153] 3.72164E-13

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CHSP1_HUMAN 53.846 % 124 7.94E-37
CSDC2_HUMAN 55.556 % 120 1.83E-35





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