Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C9.10.v6.A.ND3-1

Possible name(s)

PRPF38A; PRPF38B

Gene model

KH2012:KH.C9.10

Location

KhC9 [4,984,710 / 4,988,394]

Sequences

Amino acid sequence

Length: 345

>KH.C9.10.v6.A.ND3-1
DRMDEQYDEENYQDGEQESYEARPKLGNTLTCWGNPRTMNLNHLVLTNVQNSPYFKVRLF
ELKTYHEVVDEIYYKVDHLEPWERGTRKTAGQTGMCGGVRGVGAGGVVSTSFCILFKLFT
LKLTRKQVNGLLNHTDSPYIRGLGVMYIRYTQAPKDLWHWLEAYLEDEEEIDVKAGGGCV
MTIGMMVRTVLTKLEWFSTLFPRIPVPIQKLIDENLSAYGLTGLRRGRDEPSEDYEQYNE
DRGSRAASLKSKSPEHRSSRDRSSRHRSPEVRRKRSRSRGHSRSRDDGHRRHEKVRSSHD
RKRRSRDKDSRRRSYERSSRHRSRSRERHRRRSRSIERERSYRSR

Nucleotide sequence

Length: 1,572

>KH2012:KH.C9.10.v6.A.ND3-1
TCAGGTATTTAGCAAATTTAGCATAAGTGAGATAGAATGGATGAACAGTACGATGAAGAG
AATTATCAGGATGGTGAACAGGAGAGTTACGAAGCAAGACCCAAGCTCGGCAATACGTTA
ACATGTTGGGGTAATCCTCGAACAATGAATTTGAATCATCTCGTACTTACAAATGTGCAG
AATTCCCCTTATTTTAAAGTTCGCCTTTTCGAACTGAAAACTTATCATGAGGTTGTTGAT
GAGATTTATTATAAGGTTGACCATTTAGAGCCCTGGGAAAGAGGAACAAGGAAAACTGCC
GGCCAAACTGGGATGTGTGGTGGAGTAAGAGGTGTTGGAGCTGGTGGTGTCGTTTCCACT
TCTTTCTGCATTTTGTTCAAACTTTTCACTTTGAAACTCACACGCAAACAAGTAAATGGA
CTTCTCAACCACACTGACTCACCGTATATAAGAGGCCTAGGAGTTATGTACATTAGATAC
ACTCAAGCACCCAAGGATTTATGGCATTGGTTGGAAGCTTACTTGGAAGATGAAGAGGAA
ATAGATGTGAAGGCAGGAGGGGGTTGTGTGATGACCATAGGAATGATGGTAAGAACTGTA
CTCACTAAACTTGAATGGTTTTCAACTCTGTTCCCAAGAATACCTGTCCCAATACAAAAG
CTCATTGATGAAAATTTAAGTGCGTATGGATTGACTGGACTACGTAGAGGAAGAGATGAA
CCATCTGAAGATTATGAGCAATACAATGAAGACCGTGGCAGCAGAGCTGCTTCTTTAAAA
AGCAAATCACCAGAGCACAGATCAAGTAGAGACAGGAGCAGTCGACACCGATCCCCTGAA
GTTCGTCGTAAAAGAAGTCGGTCCCGCGGCCACAGTCGATCCCGTGATGACGGTCACCGT
CGCCATGAGAAGGTTAGAAGTTCACATGATAGAAAGCGTAGATCACGTGATAAAGATTCA
CGGAGAAGAAGTTATGAGCGTTCATCTAGACATCGAAGCAGATCCCGTGAAAGGCATCGT
AGAAGATCTCGAAGTATTGAAAGAGAACGTTCCTACCGTTCCCGTTGAAAGTTTGAATAT
TTTAATTCTTTTACAAACAACAATGTGATGACGTGGGGGAGATTTTACACCAGACATCAT
AAAAAAACAAAACTCCTTAGAGCTTCATGCTTTTTATGTTTTGAATTTTAATGCGATACT
TTTGAGTTCATATTTACCAGATATCAAAAGTTAAAGAAAAAAACACTGACTTTATATTTA
GAACAATACAAACTTATAAAACATCATATGTAAAATAAATTCTACCTGCCACACAATTAA
AATTACTGAACAGGCAAAGAAAAAACAGAATCTGCTGTATTGTCAATACGTGATTGTACA
TTGTAACTGTAAACAATACAGTTGTTTTGTTTATAGTTGATTGGGGAGGAACTTTGCTGT
GGCACATCTTTCGAATTCCGTTTGCAAATGTTTACATTAAAGCGGGTTCAGTTAATTCGC
ACTTTTATAAAAACTAAACACAAAGTGGGAAACTAGATAATAGGAAATACCATTCGTGTT
CCATATAATGTT

InterProScan

PANTHER	PRP38 (IPR005037) - T[9-345] 9.2E-118
Pfam	PRP38 (IPR005037) - T[32-211] 2.0E-55

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PR38B_HUMAN	75.521 %	315	4.43E-104