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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S91....'
  2. Transcript 'KH2012:KH.C9.180.v1....'

Transcript Model

Transcript Id

KH2012:KH.C9.180.v1.A.ND3-1

Possible name(s)

BRF1; BRF2; GTF2B

Location

KhC9 [5,518,174 / 5,521,872]

Sequences

Amino acid sequence

Length: 321

>KH.C9.180.v1.A.ND3-1
LLYSTGQMAGRNYLHQIHCPQHPDAALVEDYRAGDMICPECGLVVGDRTIDVGSEWRTFS
NDKDSKDMSRVGDSQNPLLSGSDLSTIIERPSGPPGSSNDNGFSQFSNRKTMNNSDRVLI
HAFREISSMADRISLPKNIVDRSNKLFKQVYDSKSLRGRANDAISAACLYIACRQEGVPR
TFKEICAISRISKKEIGRSFKLIVKNLETNVEVITSGDFMSRFCSNLNLPPYVQRGATYI
ARKAVEKDLVAGRSPISVAAAAIYMASQASKEKRSQKEISEIAGVAEVTIRQSYKLMHPR
AKDLFPEDFNFHIPVSQLPTF

Nucleotide sequence

Length: 1,632

>KH2012:KH.C9.180.v1.A.ND3-1
AGGGAAGCAAAATAGTCGCTAGTGTACCATGAAAAGAATCTCAGTTTAAAACGGAAAACG
AAAGAAACATTCTGTTCCTAAATTGTTTCCTGCCCAGACGATGAATCAGTTTCATTAAAT
GCACAGCGTATAGTTATACTGATTTTAAACCGCTGTGTTTGGTTGGTATTGTTCATAGTT
AAACTACTGCCATTGGAAGTTTGATTTGAACAAGCGCTACTATACTCCTAACTGCTGTAC
TCCACAGGTCAAATGGCTGGACGGAACTACCTTCACCAGATCCACTGCCCTCAGCATCCA
GACGCAGCTCTGGTTGAAGATTATCGCGCTGGCGATATGATTTGTCCTGAATGTGGGCTC
GTGGTTGGAGACAGGACAATTGATGTTGGATCAGAATGGAGAACATTTTCAAATGACAAA
GATTCAAAAGATATGTCTCGTGTTGGAGATTCACAAAACCCATTATTGTCTGGAAGTGAT
TTATCCACAATTATTGAGCGACCATCTGGACCACCAGGTTCTTCTAATGATAATGGTTTC
TCCCAGTTTTCTAATCGTAAAACAATGAACAACAGCGATCGTGTCCTGATCCATGCTTTT
CGGGAAATATCATCAATGGCTGATAGAATAAGTCTGCCAAAAAATATTGTGGATCGTTCA
AACAAACTGTTCAAGCAAGTGTATGATTCTAAAAGTTTAAGAGGTCGAGCAAATGACGCA
ATCTCTGCTGCATGTTTGTACATCGCGTGTAGACAAGAAGGGGTACCACGAACCTTTAAA
GAGATTTGTGCTATTTCACGAATCTCAAAAAAAGAAATCGGAAGATCTTTTAAGCTAATT
GTAAAAAATCTGGAGACAAATGTGGAAGTTATAACATCTGGAGACTTTATGTCGCGTTTC
TGTTCCAACTTGAATCTGCCGCCTTACGTGCAAAGAGGAGCCACATACATTGCTAGGAAA
GCTGTAGAGAAAGATCTGGTGGCAGGTAGAAGTCCAATATCAGTTGCTGCTGCTGCTATC
TACATGGCTTCACAGGCGTCCAAGGAAAAACGATCACAGAAAGAGATCAGTGAAATAGCA
GGAGTAGCAGAAGTGACAATACGTCAGTCGTATAAACTGATGCATCCTCGGGCCAAAGAT
CTCTTTCCAGAAGATTTCAATTTTCATATTCCAGTCTCACAACTTCCTACCTTTTAATGA
AATCTCATTCATTTTAATAACACCAAGCTCCAAACATGTTATTTGGTATAGTGGTATTGT
ATGTGCAACATTATACAGGATATACCAGAATTGACCACCCTCTAAATATATTGAAAGATG
CCATTGATTGATGGTCAAAAAGCAACAAAAACTTAAATGCCAAAAATTGTATCATATCTC
AGTAGTGGCACCTATAGTATTGCTATAGTAAATACTTCTTCCTATTTTCAGAAACCTTTT
TTATGGGTGCAATGACTTTGATTTTGTTATTTAGTACGTAATTCGATATAGGTGGAATTT
AAAAATGCAGTTTCATTGTATTAAGAAATAGGATAACTGTACGCACGCCGGCTGAATTCG
CTATGAATAAATAGCGGTTTAACGTACATTGACTTTCCTATTGTTATTGTTCGAGTACAA
GGTGGGTTTAAA

InterProScan

PANTHER
TFIIB (IPR000812) - T[15-311] 1.3E-101
ProSiteProfiles
Znf_TFIIB (IPR013137) - T[15-46] 8.909
Pfam
Znf_TFIIB (IPR013137) - T[19-59] 7.8E-13
PRINTS
TFIIB (IPR000812) - T[31-51] 1.2E-70 - T[53-66] 1.2E-70 - T[67-88] 1.2E-70 - T[166-185] 1.2E-70 - T[192-207] 1.2E-70 - T[219-237] 1.2E-70 - T[253-269] 1.2E-70 - T[285-299] 1.2E-70
SUPERFAMILY
Cyclin-like_sf (IPR036915) - T[119-212] 7.35E-27 - T[214-321] 9.19E-33
CDD
Cyclin-like (IPR013763) - T[119-204] 5.95898E-14 - T[218-298] 2.27339E-16
SMART
Cyclin-like (IPR013763) - T[124-205] 2.8E-11 - T[218-299] 7.5E-13
Pfam
TFIIB_cyclin (IPR013150) - T[126-196] 2.8E-23 - T[220-290] 1.1E-25
ProSitePatterns
TFIIB_CS (IPR023486) - T[252-267] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TF2B_HUMAN 74.026 % 478 1.89E-171