- Transcript 'KH2012:KH.C9.180.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.180.v1.A.ND3-1
Possible name(s)
BRF1; BRF2; GTF2B
Gene model
Location
KhC9 [5,518,174 / 5,521,872]
Amino acid sequence
Length: 321
>KH.C9.180.v1.A.ND3-1
LLYSTGQMAGRNYLHQIHCPQHPDAALVEDYRAGDMICPECGLVVGDRTIDVGSEWRTFS
NDKDSKDMSRVGDSQNPLLSGSDLSTIIERPSGPPGSSNDNGFSQFSNRKTMNNSDRVLI
HAFREISSMADRISLPKNIVDRSNKLFKQVYDSKSLRGRANDAISAACLYIACRQEGVPR
TFKEICAISRISKKEIGRSFKLIVKNLETNVEVITSGDFMSRFCSNLNLPPYVQRGATYI
ARKAVEKDLVAGRSPISVAAAAIYMASQASKEKRSQKEISEIAGVAEVTIRQSYKLMHPR
AKDLFPEDFNFHIPVSQLPTF
Nucleotide sequence
Length: 1,632
>KH2012:KH.C9.180.v1.A.ND3-1
AGGGAAGCAAAATAGTCGCTAGTGTACCATGAAAAGAATCTCAGTTTAAAACGGAAAACG
AAAGAAACATTCTGTTCCTAAATTGTTTCCTGCCCAGACGATGAATCAGTTTCATTAAAT
GCACAGCGTATAGTTATACTGATTTTAAACCGCTGTGTTTGGTTGGTATTGTTCATAGTT
AAACTACTGCCATTGGAAGTTTGATTTGAACAAGCGCTACTATACTCCTAACTGCTGTAC
TCCACAGGTCAAATGGCTGGACGGAACTACCTTCACCAGATCCACTGCCCTCAGCATCCA
GACGCAGCTCTGGTTGAAGATTATCGCGCTGGCGATATGATTTGTCCTGAATGTGGGCTC
GTGGTTGGAGACAGGACAATTGATGTTGGATCAGAATGGAGAACATTTTCAAATGACAAA
GATTCAAAAGATATGTCTCGTGTTGGAGATTCACAAAACCCATTATTGTCTGGAAGTGAT
TTATCCACAATTATTGAGCGACCATCTGGACCACCAGGTTCTTCTAATGATAATGGTTTC
TCCCAGTTTTCTAATCGTAAAACAATGAACAACAGCGATCGTGTCCTGATCCATGCTTTT
CGGGAAATATCATCAATGGCTGATAGAATAAGTCTGCCAAAAAATATTGTGGATCGTTCA
AACAAACTGTTCAAGCAAGTGTATGATTCTAAAAGTTTAAGAGGTCGAGCAAATGACGCA
ATCTCTGCTGCATGTTTGTACATCGCGTGTAGACAAGAAGGGGTACCACGAACCTTTAAA
GAGATTTGTGCTATTTCACGAATCTCAAAAAAAGAAATCGGAAGATCTTTTAAGCTAATT
GTAAAAAATCTGGAGACAAATGTGGAAGTTATAACATCTGGAGACTTTATGTCGCGTTTC
TGTTCCAACTTGAATCTGCCGCCTTACGTGCAAAGAGGAGCCACATACATTGCTAGGAAA
GCTGTAGAGAAAGATCTGGTGGCAGGTAGAAGTCCAATATCAGTTGCTGCTGCTGCTATC
TACATGGCTTCACAGGCGTCCAAGGAAAAACGATCACAGAAAGAGATCAGTGAAATAGCA
GGAGTAGCAGAAGTGACAATACGTCAGTCGTATAAACTGATGCATCCTCGGGCCAAAGAT
CTCTTTCCAGAAGATTTCAATTTTCATATTCCAGTCTCACAACTTCCTACCTTTTAATGA
AATCTCATTCATTTTAATAACACCAAGCTCCAAACATGTTATTTGGTATAGTGGTATTGT
ATGTGCAACATTATACAGGATATACCAGAATTGACCACCCTCTAAATATATTGAAAGATG
CCATTGATTGATGGTCAAAAAGCAACAAAAACTTAAATGCCAAAAATTGTATCATATCTC
AGTAGTGGCACCTATAGTATTGCTATAGTAAATACTTCTTCCTATTTTCAGAAACCTTTT
TTATGGGTGCAATGACTTTGATTTTGTTATTTAGTACGTAATTCGATATAGGTGGAATTT
AAAAATGCAGTTTCATTGTATTAAGAAATAGGATAACTGTACGCACGCCGGCTGAATTCG
CTATGAATAAATAGCGGTTTAACGTACATTGACTTTCCTATTGTTATTGTTCGAGTACAA
GGTGGGTTTAAA
| PANTHER |
TFIIB (IPR000812) - T[15-311] 1.3E-101 |
| ProSiteProfiles |
Znf_TFIIB (IPR013137) - T[15-46] 8.909 |
| Pfam |
Znf_TFIIB (IPR013137) - T[19-59] 7.8E-13 |
| PRINTS |
TFIIB (IPR000812) - T[31-51] 1.2E-70 - T[53-66] 1.2E-70 - T[67-88] 1.2E-70 - T[166-185] 1.2E-70 - T[192-207] 1.2E-70 - T[219-237] 1.2E-70 - T[253-269] 1.2E-70 - T[285-299] 1.2E-70 |
| SUPERFAMILY |
Cyclin-like_sf (IPR036915) - T[119-212] 7.35E-27 - T[214-321] 9.19E-33 |
| CDD |
Cyclin-like (IPR013763) - T[119-204] 5.95898E-14 - T[218-298] 2.27339E-16 |
| SMART |
Cyclin-like (IPR013763) - T[124-205] 2.8E-11 - T[218-299] 7.5E-13 |
| Pfam |
TFIIB_cyclin (IPR013150) - T[126-196] 2.8E-23 - T[220-290] 1.1E-25 |
| ProSitePatterns |
TFIIB_CS (IPR023486) - T[252-267] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TF2B_HUMAN | 74.026 % | 478 | 1.89E-171 |