- EST 'AHC0AAA229YH21_RM1' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C9.24.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C9.24.v1.A.SL2-1
Possible name(s)
CALR; CANX; CLGN
Gene model
Location
KhC9 [4,015,715 / 4,021,463]
Amino acid sequence
Length: 574
>KH.C9.24.v1.A.SL2-1
CTMWKVITLVLCFGLVCAQESTGPTYVTPVPSGNVFIDEPFDSDDALESWTQSQATKDGV
DSDIAKYNGNWAVEGLAENALPGDLGLVLKGKAKHHAIAASLDTVYKFEGKPFIMQYEVN
FQTGIECGGAYVKLLTHSDGLDLSDFRDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGE
IEEKHANKPTTDFKSYYTDKASHLYTLVINPDNSFQVLIDQTVINSGNLLTDFTPPVVPP
KEIEDKDDKKPEDWDEREMIPDPDATKPDDWDETAPARIVDSDAEMPEGWLEDEPLYIPD
PDASMPEDWDEEMDGEWEAPKVDNPKCAEAAGCGTWEPPMIDNPEYKGIWSAPEIANPAY
KGIWKPRMIPNPGYFEDELPYKMSPIGAVGFELWSMSEDIYFDNILITDDREVADDYAEK
TWKLKKQIRAEKEPSFVQGLLSATEEKPWLWIIYVLVVGLPAVLLFAFCCGGKKKADPKK
TDEATPDDPHESENEDENDKEEEKEEDGEASQDENKEEASQEEEEAATEETGDGDKLTKE
DLEKDDDEIQALEDDNSPVNSRRSPRKRKPRVQD
Nucleotide sequence
Length: 2,200
>KH2012:KH.C9.24.v1.A.SL2-1
TGCACTATGTGGAAAGTTATTACATTGGTATTGTGTTTTGGATTAGTTTGTGCACAGGAG
TCTACGGGTCCTACCTATGTTACACCAGTTCCAAGTGGAAATGTGTTCATAGATGAACCA
TTTGACTCAGATGATGCATTAGAAAGTTGGACACAGTCACAAGCCACTAAAGATGGAGTT
GATTCAGATATTGCTAAATATAATGGGAACTGGGCAGTTGAGGGTCTGGCTGAAAACGCA
TTGCCCGGTGATCTAGGTCTTGTACTAAAAGGCAAAGCAAAGCATCATGCTATTGCGGCA
AGCCTTGACACAGTCTATAAATTTGAAGGCAAACCATTCATAATGCAGTATGAGGTAAAT
TTTCAAACTGGAATTGAATGTGGAGGAGCATACGTGAAACTGCTGACACATTCGGATGGT
TTGGACTTGAGTGATTTCCGAGACAAGACACCATACACAATCATGTTTGGCCCTGATAAA
TGTGGAGAAGATTACAAGTTACACTTCATTTTCCGCCACAAAAACCCTAAAACCGGTGAG
ATTGAGGAGAAACACGCCAATAAACCAACCACAGACTTCAAATCTTATTACACGGATAAA
GCATCCCATCTTTACACACTTGTCATCAACCCAGACAATTCATTCCAAGTTCTTATTGAC
CAAACTGTGATTAATTCTGGAAATCTTTTGACGGATTTCACTCCTCCTGTCGTACCACCA
AAGGAAATTGAAGACAAAGATGACAAGAAGCCAGAAGATTGGGATGAGAGAGAGATGATA
CCTGATCCGGATGCAACAAAACCAGATGATTGGGATGAAACTGCTCCAGCAAGAATTGTT
GATTCAGATGCTGAAATGCCGGAAGGTTGGCTTGAAGATGAACCTCTTTACATACCTGAT
CCGGATGCGAGTATGCCAGAAGATTGGGATGAGGAGATGGATGGAGAATGGGAAGCTCCT
AAGGTCGATAATCCAAAATGTGCGGAGGCTGCTGGTTGTGGGACATGGGAGCCACCCATG
ATTGACAACCCTGAATACAAAGGTATATGGTCGGCTCCTGAAATAGCAAACCCAGCATAC
AAAGGTATTTGGAAGCCAAGGATGATCCCGAACCCCGGCTACTTTGAAGATGAATTGCCT
TACAAGATGTCACCAATTGGAGCAGTTGGCTTCGAACTGTGGTCCATGAGCGAGGATATT
TATTTCGACAACATCCTCATCACTGATGATCGTGAAGTGGCTGATGATTACGCAGAGAAG
ACCTGGAAACTGAAGAAGCAAATTCGAGCCGAGAAAGAGCCAAGCTTTGTACAAGGACTG
CTTTCAGCAACTGAAGAAAAGCCGTGGTTGTGGATCATTTATGTGCTGGTGGTTGGACTG
CCGGCTGTGCTGCTCTTTGCTTTCTGTTGCGGTGGTAAGAAAAAGGCAGATCCTAAGAAG
ACTGATGAAGCCACACCGGATGACCCACACGAGTCTGAAAATGAAGATGAAAATGACAAG
GAGGAAGAAAAAGAAGAGGATGGAGAGGCTTCTCAAGATGAAAACAAGGAAGAAGCAAGT
CAGGAAGAGGAAGAAGCTGCAACAGAGGAGACAGGTGATGGAGATAAATTAACTAAAGAA
GATCTGGAGAAAGATGACGATGAAATTCAAGCTCTTGAAGATGATAATAGTCCAGTGAAC
AGCAGGCGTTCCCCAAGAAAACGAAAGCCCAGAGTACAAGATTGAAGGGGATGGTTGTGG
GACTTCATATTTTAGATTCAAAAAGTTGGCAGAACAATTTAACGAATTTATGGAAAACTT
TGGTTGTTTCATTATCACTGTGTGATAAACTGATGTCAGATGGTTTATTTTTACACAAAG
ATCCATATCACGCTGCTTTAATGTAAATATTAATGATTGCTTGCTGTTCTATTTCCAGTG
TCCCGCAATTAATAGGAGTAATACTAATTACAACTACCATTTCTGTTGTAATTTTGCAGT
TTGCATAGAAGATTTTCTTGGTCTTTCTTGGTATCTTTTTACCAAGAAAATAACACTATG
CAACAGGCCCCCAATCTTGTAAGACCGAATCCTACTATATAATGTAGATTTCAAATGTTG
CATGTTTGCTTAGTAGTGGTTTATGGTTCTTGTACGGGTATTGTGTAAAAATTCTCTTCG
ATGTTACGTTTACAACTCAGTATGATGTCACAATAAACAG
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[27-245] 1.9E-63 |
| PANTHER |
Calret/calnex (IPR001580) - T[29-571] 2.8E-226 |
| Pfam |
Calret/calnex (IPR001580) - T[39-407] 9.1E-163 |
| PRINTS |
Calret/calnex (IPR001580) - T[122-140] 6.2E-49 - T[150-166] 6.2E-49 - T[250-263] 6.2E-49 - T[298-320] 6.2E-49 - T[341-360] 6.2E-49 - T[388-408] 6.2E-49 |
| ProSitePatterns |
Calret/calnex_CS (IPR018124) - T[154-162] . |
| SUPERFAMILY |
Calreticulin/calnexin_P_dom_sf (IPR009033) - T[236-376] 5.58E-59 |
| Gene3D |
Calreticulin/calnexin_P_dom_sf (IPR009033) - T[236-381] 1.5E-171 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CALX_HUMAN | 61.159 % | 616 | 0 |
| CLGN_HUMAN | 56.129 % | 556 | 0 |
| CALR3_HUMAN | 29.118 % | 133 | 3.99E-34 |