- Transcript 'KH2012:KH.C9.247.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.247.v1.A.SL1-1
Possible name(s)
PCDH12; PCDH18; PCDH19
Gene model
Location
KhC9 [2,284,362 / 2,293,319]
Amino acid sequence
Length: 1,134
>KH.C9.247.v1.A.SL1-1
VVADMSEIFGLLWKDRLDRHFKLLNQKIVSSSSFNLPTSLQQRPHAVALGASNGLMTLRR
VVDREVECGQAKECIIKVQAVMLPQRVFSLLNLDIVINDINDNLPKFPHKPIVLNVSEST
ALAEPVNLDAFQARDLDSGNNSRISYSISPSKPFEVQQGVDEAGRPHLQLLLNAELDYET
KSVYHLTLHATDHGKPALSNQVTVRIMVTDSNDHSPVFSTSSELVIELLENQEPGIIQTV
HATDRDSGENGRVRYFLGDEPQSVSHQLVTVDENSGEVTLVRNLDREVHDGMRILIEARD
SPATNQRTTRMWLVLRVDDDNDNAPVINMNFIVDADGQTAYISEASPVGTYVAYVSATDA
DHGKNSEVEISIKTLINGNFVSSGHFELAADGLIGTGLELDREVQSIYKVAVIACDAGDK
IRCSRNNITVIILDENDHTPVFKKSVYEVTLSEADGIGTSVITVSASDMDSKFAPVWTKN
ELEISLNGKVTYLIESSDNTFSVDATTGEVTLVRPLDREGQSEWEVRVIARDGGNPYRES
FCTLKVTVSDVNDNRPLFIYPAVENSTAHATILRDDVIARIQAIDYDSEKFSKVELSMVS
VDGCTNLQGVDGNLPYTYFILDTKTGDLRLNMSTTDLNDVVGTHRIIVKASDNGTPPLEM
NTSLIIVVSDTLLLPSQMYHEKEDAPSVPGLAISTNFLIIVISLASATLILLIVITAVVI
KCKKDNKKIRTYNCRDAESENGWEEGNTDKAQTVNNSNTNTWSKSVVSHEGSSQITENER
LSTQSTENNNKQAKGARKPSDISLNFPLHVSSGPMLMTSRQDPATYNVTSSMIRPPSLLT
TFSTEGKIAQPRLHGLLPHITSHTDGDSGRGDSDPDTGSYDVVKDIDYLPSYSYVNPDSQ
SKNMKAVVSNGMGSRCTDDCNKYGHSDACWMPSPTKGQYYASADNEVSRSSCYTQPTFTQ
ANSDIDFQREYNRVLETIEETTPVLESTIGYEYEPEVMRQNVRRSICLSRLASESRLLSQ
SSEPEVYHSGVLSRQYGLWTDEYQKPIGVRPNSLSASPAPSTGPASSHLSGNSSCPSTVF
THCDTDSKTSSNIVAPKPHYLSMTSRASTLPCENNPNMKETQQIISDIDQLLSE
Nucleotide sequence
Length: 3,953
>KH2012:KH.C9.247.v1.A.SL1-1
AAGTAGCAAAATGAATATAATTGTAATAACTTTTGCGGTCACGCTACTTTCTATATTCAA
ATTCCAAAATACTAATGCTTCTAACACAGTATCTTTGCGGGTGTATGTTAACGAAGGAAA
TGCACCAGGTAAGTTGTTGCAGACATGTCCGAAATATTTGGCTTACTTTGGAAAGACAGA
CTCGATCGTCACTTCAAACTTCTTAATCAGAAAATAGTTTCATCGTCGTCATTTAATTTG
CCCACTTCGCTGCAGCAACGCCCTCATGCAGTTGCACTTGGTGCTTCTAATGGACTTATG
ACCCTGCGTAGAGTCGTGGACAGGGAAGTGGAATGCGGCCAAGCGAAGGAATGTATTATA
AAAGTTCAGGCCGTCATGCTTCCACAAAGAGTTTTCTCTCTTCTGAATCTTGACATTGTT
ATAAACGACATCAATGATAATTTGCCCAAATTCCCACACAAACCAATTGTACTAAATGTG
AGCGAAAGTACAGCATTGGCAGAACCTGTCAATCTAGACGCATTCCAAGCTCGTGACCTT
GATTCAGGTAACAACTCCCGTATTTCGTATTCTATTTCGCCAAGTAAGCCGTTTGAGGTC
CAACAAGGGGTTGATGAGGCGGGCCGACCTCATTTACAGTTGCTTCTTAACGCTGAATTA
GATTATGAGACAAAGTCGGTTTACCATTTGACCCTTCACGCAACTGACCACGGAAAACCC
GCATTATCCAATCAAGTTACTGTCAGAATTATGGTGACTGATTCGAACGACCACAGCCCT
GTGTTTTCCACAAGCTCTGAGTTGGTGATCGAGTTGCTGGAAAACCAAGAGCCTGGAATT
ATTCAAACTGTTCATGCGACTGATAGGGATTCTGGCGAAAACGGTCGAGTAAGATACTTT
CTTGGGGACGAACCACAATCTGTCTCCCATCAGTTGGTTACTGTAGATGAAAATTCTGGA
GAAGTTACTTTGGTCAGAAATCTTGATCGGGAAGTTCACGATGGCATGAGAATTCTGATA
GAAGCACGTGATTCCCCAGCGACCAATCAGCGCACGACTCGCATGTGGTTGGTTCTTCGT
GTTGATGATGACAATGATAATGCTCCAGTTATAAATATGAACTTTATTGTAGATGCTGAC
GGCCAAACAGCATATATATCTGAAGCATCTCCTGTCGGAACATACGTGGCCTACGTTAGT
GCTACTGATGCCGACCATGGAAAAAACAGCGAAGTAGAAATTTCCATCAAGACATTAATC
AACGGGAACTTTGTATCTTCCGGACATTTTGAACTAGCAGCTGATGGTTTGATCGGGACG
GGTCTTGAGTTAGACCGGGAAGTCCAGAGCATTTACAAAGTTGCTGTGATTGCATGCGAC
GCAGGGGATAAAATAAGGTGTTCACGCAACAATATCACTGTCATTATACTTGACGAAAAC
GATCACACCCCTGTATTTAAGAAGTCAGTGTATGAAGTTACATTGTCAGAAGCTGATGGA
ATTGGAACATCTGTCATTACTGTATCTGCATCTGATATGGATAGCAAGTTTGCACCCGTG
TGGACAAAAAACGAGCTGGAAATTTCACTGAACGGGAAGGTTACTTATTTAATAGAAAGT
AGCGATAATACGTTCTCGGTGGATGCAACGACAGGAGAAGTTACGTTGGTTCGTCCACTG
GATCGAGAAGGTCAAAGCGAATGGGAGGTAAGAGTTATTGCACGAGACGGTGGCAATCCA
TACAGGGAATCTTTTTGCACCTTAAAAGTCACAGTTTCTGACGTAAACGATAACCGACCA
TTGTTCATTTACCCTGCTGTTGAAAACTCTACTGCACACGCAACAATACTTCGTGACGAT
GTGATTGCCCGAATACAGGCGATTGACTACGACAGTGAGAAGTTCTCAAAAGTTGAGCTT
TCAATGGTTTCCGTGGATGGCTGTACCAACTTGCAAGGGGTCGATGGTAACTTGCCATAC
ACTTACTTTATCCTTGATACAAAAACCGGTGACTTGAGGCTCAACATGAGCACAACTGAT
CTCAACGACGTTGTGGGCACGCACAGAATTATTGTGAAGGCAAGCGACAATGGAACACCG
CCTCTTGAAATGAACACCAGTCTCATAATAGTGGTGTCCGACACCTTGCTGTTGCCATCT
CAAATGTACCACGAGAAAGAAGATGCTCCGTCTGTTCCTGGACTCGCGATTTCAACCAAC
TTTCTGATTATCGTGATTTCGCTGGCATCCGCTACTCTTATTTTACTCATTGTTATCACA
GCAGTGGTCATCAAATGCAAAAAGGACAATAAGAAAATCCGAACATACAACTGCCGGGAT
GCGGAAAGCGAGAATGGCTGGGAAGAGGGGAATACTGACAAAGCACAAACAGTGAACAAC
AGCAATACCAATACTTGGTCCAAGTCTGTAGTCAGCCATGAAGGTTCATCACAAATTACA
GAGAACGAACGACTATCGACTCAATCAACTGAAAACAATAATAAGCAAGCGAAAGGGGCC
AGGAAGCCATCAGATATCAGTTTAAATTTTCCTCTTCACGTGTCTTCGGGTCCGATGTTA
ATGACGTCACGACAAGACCCTGCAACGTACAATGTGACGTCATCAATGATCAGACCACCG
TCTTTGCTCACAACGTTTTCAACTGAAGGAAAGATTGCACAGCCAAGACTGCATGGTCTT
CTACCACACATAACATCACATACGGATGGAGACAGTGGGCGTGGTGACAGCGACCCGGAT
ACTGGAAGTTACGATGTTGTAAAAGATATTGATTATCTTCCATCTTATTCTTACGTCAAC
CCCGATTCTCAAAGCAAAAACATGAAAGCAGTGGTGTCTAATGGTATGGGCTCTCGGTGT
ACCGATGATTGCAACAAATACGGACACAGTGATGCATGCTGGATGCCTTCGCCAACTAAA
GGTCAATATTACGCAAGTGCAGATAACGAAGTTTCACGAAGCTCATGTTACACTCAACCC
ACGTTCACCCAAGCGAATAGTGACATCGACTTCCAACGCGAATACAACCGAGTTCTTGAA
ACCATAGAGGAAACCACTCCTGTGCTCGAGTCGACCATCGGCTATGAATATGAACCGGAG
GTTATGCGGCAAAACGTGCGCCGTTCCATCTGTCTATCTCGTCTTGCATCAGAGTCACGC
TTGCTATCACAGTCCAGTGAGCCCGAGGTCTACCACAGCGGGGTTCTAAGCAGACAGTAC
GGTCTTTGGACAGACGAATACCAGAAGCCAATCGGCGTTCGACCGAATTCACTCTCAGCA
TCTCCAGCGCCGTCTACCGGCCCCGCGAGTTCCCATTTATCCGGCAACTCGTCTTGTCCA
TCAACTGTTTTTACACATTGCGATACGGACAGTAAGACCTCGTCTAATATTGTTGCCCCC
AAACCCCATTACCTATCCATGACTTCCCGAGCGTCGACATTACCTTGCGAAAACAACCCC
AACATGAAAGAAACTCAACAAATTATCAGCGACATCGACCAATTACTTTCAGAATAAAAC
ACCATCAAAAATAGTTTCCTGTATTCTGTCTTTTCATTCTTTAATTTCGCTTATAACTCC
AATATAGGTCTCCTGTCATTTTTTTGCGAACCAACGTTTCAGTGTCCTACTCCCAGGTCA
GGTTCATCGCGGCTCTATACGTATAGGTGAAGTGAAGTCCTACAGCTTCACACGGCATAT
GAAGGAAGATTTAGGCCAGAGTTGGGATATTTCACCTTTTCACAATTGTTACGTTTATTT
CTTCTTTTGGAAGTGCCTGTAACGAAGATATTATTGTCTGATGCTTTTTCACGTTATTTT
TGCGCTTTCTTTCTTAACAACATACTGTGAAAAATTCTTCAGTATTTCTATAAAAAAACA
ACAAAAATATTTCAAAATTGCTGCGTATGAATCAAATAAATGCAGTATTACAG
| SMART |
Cadherin (IPR002126) - T[29-105] 2.3 - T[131-216] 1.5E-22 - T[240-325] 7.3E-19 - T[355-440] 3.2E-13 - T[477-556] 5.6E-23 - T[581-676] 0.0071 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[95-236] 1.83E-23 - T[206-332] 3.43E-20 - T[321-434] 9.68E-15 - T[430-561] 2.9E-27 - T[551-670] 4.06E-11 |
| Pfam |
Cadherin (IPR002126) - T[130-209] 2.0E-12 - T[226-312] 1.2E-12 - T[339-432] 4.1E-10 - T[447-548] 1.2E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[206-216] . - T[546-556] . |
| PRINTS |
Cadherin (IPR002126) - T[267-286] 2.5E-26 - T[333-362] 2.5E-26 - T[407-419] 2.5E-26 - T[421-440] 2.5E-26 - T[440-453] 2.5E-26 - T[506-532] 2.5E-26 - T[540-557] 2.5E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 30.154 % | 322 | 7.1E-93 |
| PCD19_HUMAN | 30.213 % | 279 | 4.63E-78 |
| PCD12_HUMAN | 30.055 % | 274 | 2.94E-76 |