- Clone 'cinc008m15' >
- Clone 'cibd061k01' >
- Clone 'man30b20' >
- Transcript 'KH2012:KH.C9.247.v2....'
Transcript Model
Transcript Id
KH2012:KH.C9.247.v2.A.SL1-1
Possible name(s)
PCDH12; PCDH18; PCDH19
Gene model
Location
KhC9 [2,284,362 / 2,293,319]
Amino acid sequence
Length: 1,178
>KH.C9.247.v2.A.SL1-1
SSKMNIIVITFAVTLLSIFKFQNTNASNTVSLRVYVNEGNAPGEVVADMSEIFGLLWKDR
LDRHFKLLNQKIVSSSSFNLPTSLQQRPHAVALGASNGLMTLRRVVDREVECGQAKECII
KVQAVMLPQRVFSLLNLDIVINDINDNLPKFPHKPIVLNVSESTALAEPVNLDAFQARDL
DSGNNSRISYSISPSKPFEVQQGVDEAGRPHLQLLLNAELDYETKSVYHLTLHATDHGKP
ALSNQVTVRIMVTDSNDHSPVFSTSSELVIELLENQEPGIIQTVHATDRDSGENGRVRYF
LGDEPQSVSHQLVTVDENSGEVTLVRNLDREVHDGMRILIEARDSPATNQRTTRMWLVLR
VDDDNDNAPVINMNFIVDADGQTAYISEASPVGTYVAYVSATDADHGKNSEVEISIKTLI
NGNFVSSGHFELAADGLIGTGLELDREVQSIYKVAVIACDAGDKIRCSRNNITVIILDEN
DHTPVFKKSVYEVTLSEADGIGTSVITVSASDMDSKFAPVWTKNELEISLNGKVTYLIES
SDNTFSVDATTGEVTLVRPLDREGQSEWEVRVIARDGGNPYRESFCTLKVTVSDVNDNRP
LFIYPAVENSTAHATILRDDVIARIQAIDYDSEKFSKVELSMVSVDGCTNLQGVDGNLPY
TYFILDTKTGDLRLNMSTTDLNDVVGTHRIIVKASDNGTPPLEMNTSLIIVVSDTLLLPS
QMYHEKEDAPSVPGLAISTNFLIIVISLASATLILLIVITAVVIKCKKDNKKIRTYNCRD
AESENGWEEGNTDKAQTVNNSNTNTWSKSVVSHEGSSQITENERLSTQSTENNNKQAKGA
RKPSDISLNFPLHVSSGPMLMTSRQDPATYNVTSSMIRPPSLLTTFSTEGKIAQPRLHGL
LPHITSHTDGDSGRGDSDPDTGSYDVVKDIDYLPSYSYVNPDSQSKNMKAVVSNGMGSRC
TDDCNKYGHSDACWMPSPTKGQYYASADNEVSRSSCYTQPTFTQANSDIDFQREYNRVLE
TIEETTPVLESTIGYEYEPEVMRQNVRRSICLSRLASESRLLSQSSEPEVYHSGVLSRQY
GLWTDEYQKPIGVRPNSLSASPAPSTGPASSHLSGNSSCPSTVFTHCDTDSKTSSNIVAP
KPHYLSMTSRASTLPCENNPNMKETQQIISDIDQLLSE
Nucleotide sequence
Length: 3,954
>KH2012:KH.C9.247.v2.A.SL1-1
AAGTAGCAAAATGAATATAATTGTAATAACTTTTGCGGTCACGCTACTTTCTATATTCAA
ATTCCAAAATACTAATGCTTCTAACACAGTATCTTTGCGGGTGTATGTTAACGAAGGAAA
TGCACCAGGGGAGGTTGTTGCAGACATGTCCGAAATATTTGGCTTACTTTGGAAAGACAG
ACTCGATCGTCACTTCAAACTTCTTAATCAGAAAATAGTTTCATCGTCGTCATTTAATTT
GCCCACTTCGCTGCAGCAACGCCCTCATGCAGTTGCACTTGGTGCTTCTAATGGACTTAT
GACCCTGCGTAGAGTCGTGGACAGGGAAGTGGAATGCGGCCAAGCGAAGGAATGTATTAT
AAAAGTTCAGGCCGTCATGCTTCCACAAAGAGTTTTCTCTCTTCTGAATCTTGACATTGT
TATAAACGACATCAATGATAATTTGCCCAAATTCCCACACAAACCAATTGTACTAAATGT
GAGCGAAAGTACAGCATTGGCAGAACCTGTCAATCTAGACGCATTCCAAGCTCGTGACCT
TGATTCAGGTAACAACTCCCGTATTTCGTATTCTATTTCGCCAAGTAAGCCGTTTGAGGT
CCAACAAGGGGTTGATGAGGCGGGCCGACCTCATTTACAGTTGCTTCTTAACGCTGAATT
AGATTATGAGACAAAGTCGGTTTACCATTTGACCCTTCACGCAACTGACCACGGAAAACC
CGCATTATCCAATCAAGTTACTGTCAGAATTATGGTGACTGATTCGAACGACCACAGCCC
TGTGTTTTCCACAAGCTCTGAGTTGGTGATCGAGTTGCTGGAAAACCAAGAGCCTGGAAT
TATTCAAACTGTTCATGCGACTGATAGGGATTCTGGCGAAAACGGTCGAGTAAGATACTT
TCTTGGGGACGAACCACAATCTGTCTCCCATCAGTTGGTTACTGTAGATGAAAATTCTGG
AGAAGTTACTTTGGTCAGAAATCTTGATCGGGAAGTTCACGATGGCATGAGAATTCTGAT
AGAAGCACGTGATTCCCCAGCGACCAATCAGCGCACGACTCGCATGTGGTTGGTTCTTCG
TGTTGATGATGACAATGATAATGCTCCAGTTATAAATATGAACTTTATTGTAGATGCTGA
CGGCCAAACAGCATATATATCTGAAGCATCTCCTGTCGGAACATACGTGGCCTACGTTAG
TGCTACTGATGCCGACCATGGAAAAAACAGCGAAGTAGAAATTTCCATCAAGACATTAAT
CAACGGGAACTTTGTATCTTCCGGACATTTTGAACTAGCAGCTGATGGTTTGATCGGGAC
GGGTCTTGAGTTAGACCGGGAAGTCCAGAGCATTTACAAAGTTGCTGTGATTGCATGCGA
CGCAGGGGATAAAATAAGGTGTTCACGCAACAATATCACTGTCATTATACTTGACGAAAA
CGATCACACCCCTGTATTTAAGAAGTCAGTGTATGAAGTTACATTGTCAGAAGCTGATGG
AATTGGAACATCTGTCATTACTGTATCTGCATCTGATATGGATAGCAAGTTTGCACCCGT
GTGGACAAAAAACGAGCTGGAAATTTCACTGAACGGGAAGGTTACTTATTTAATAGAAAG
TAGCGATAATACGTTCTCGGTGGATGCAACGACAGGAGAAGTTACGTTGGTTCGTCCACT
GGATCGAGAAGGTCAAAGCGAATGGGAGGTAAGAGTTATTGCACGAGACGGTGGCAATCC
ATACAGGGAATCTTTTTGCACCTTAAAAGTCACAGTTTCTGACGTAAACGATAACCGACC
ATTGTTCATTTACCCTGCTGTTGAAAACTCTACTGCACACGCAACAATACTTCGTGACGA
TGTGATTGCCCGAATACAGGCGATTGACTACGACAGTGAGAAGTTCTCAAAAGTTGAGCT
TTCAATGGTTTCCGTGGATGGCTGTACCAACTTGCAAGGGGTCGATGGTAACTTGCCATA
CACTTACTTTATCCTTGATACAAAAACCGGTGACTTGAGGCTCAACATGAGCACAACTGA
TCTCAACGACGTTGTGGGCACGCACAGAATTATTGTGAAGGCAAGCGACAATGGAACACC
GCCTCTTGAAATGAACACCAGTCTCATAATAGTGGTGTCCGACACCTTGCTGTTGCCATC
TCAAATGTACCACGAGAAAGAAGATGCTCCGTCTGTTCCTGGACTCGCGATTTCAACCAA
CTTTCTGATTATCGTGATTTCGCTGGCATCCGCTACTCTTATTTTACTCATTGTTATCAC
AGCAGTGGTCATCAAATGCAAAAAGGACAATAAGAAAATCCGAACATACAACTGCCGGGA
TGCGGAAAGCGAGAATGGCTGGGAAGAGGGGAATACTGACAAAGCACAAACAGTGAACAA
CAGCAATACCAATACTTGGTCCAAGTCTGTAGTCAGCCATGAAGGTTCATCACAAATTAC
AGAGAACGAACGACTATCGACTCAATCAACTGAAAACAATAATAAGCAAGCGAAAGGGGC
CAGGAAGCCATCAGATATCAGTTTAAATTTTCCTCTTCACGTGTCTTCGGGTCCGATGTT
AATGACGTCACGACAAGACCCTGCAACGTACAATGTGACGTCATCAATGATCAGACCACC
GTCTTTGCTCACAACGTTTTCAACTGAAGGAAAGATTGCACAGCCAAGACTGCATGGTCT
TCTACCACACATAACATCACATACGGATGGAGACAGTGGGCGTGGTGACAGCGACCCGGA
TACTGGAAGTTACGATGTTGTAAAAGATATTGATTATCTTCCATCTTATTCTTACGTCAA
CCCCGATTCTCAAAGCAAAAACATGAAAGCAGTGGTGTCTAATGGTATGGGCTCTCGGTG
TACCGATGATTGCAACAAATACGGACACAGTGATGCATGCTGGATGCCTTCGCCAACTAA
AGGTCAATATTACGCAAGTGCAGATAACGAAGTTTCACGAAGCTCATGTTACACTCAACC
CACGTTCACCCAAGCGAATAGTGACATCGACTTCCAACGCGAATACAACCGAGTTCTTGA
AACCATAGAGGAAACCACTCCTGTGCTCGAGTCGACCATCGGCTATGAATATGAACCGGA
GGTTATGCGGCAAAACGTGCGCCGTTCCATCTGTCTATCTCGTCTTGCATCAGAGTCACG
CTTGCTATCACAGTCCAGTGAGCCCGAGGTCTACCACAGCGGGGTTCTAAGCAGACAGTA
CGGTCTTTGGACAGACGAATACCAGAAGCCAATCGGCGTTCGACCGAATTCACTCTCAGC
ATCTCCAGCGCCGTCTACCGGCCCCGCGAGTTCCCATTTATCCGGCAACTCGTCTTGTCC
ATCAACTGTTTTTACACATTGCGATACGGACAGTAAGACCTCGTCTAATATTGTTGCCCC
CAAACCCCATTACCTATCCATGACTTCCCGAGCGTCGACATTACCTTGCGAAAACAACCC
CAACATGAAAGAAACTCAACAAATTATCAGCGACATCGACCAATTACTTTCAGAATAAAA
CACCATCAAAAATAGTTTCCTGTATTCTGTCTTTTCATTCTTTAATTTCGCTTATAACTC
CAATATAGGTCTCCTGTCATTTTTTTGCGAACCAACGTTTCAGTGTCCTACTCCCAGGTC
AGGTTCATCGCGGCTCTATACGTATAGGTGAAGTGAAGTCCTACAGCTTCACACGGCATA
TGAAGGAAGATTTAGGCCAGAGTTGGGATATTTCACCTTTTCACAATTGTTACGTTTATT
TCTTCTTTTGGAAGTGCCTGTAACGAAGATATTATTGTCTGATGCTTTTTCACGTTATTT
TTGCGCTTTCTTTCTTAACAACATACTGTGAAAAATTCTTCAGTATTTCTATAAAAAAAC
AACAAAAATATTTCAAAATTGCTGCGTATGAATCAAATAAATGCAGTATTACAG
| SMART |
Cadherin (IPR002126) - T[73-149] 2.3 - T[175-260] 1.5E-22 - T[284-369] 7.3E-19 - T[399-484] 3.2E-13 - T[521-600] 5.6E-23 - T[625-720] 0.0071 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[139-280] 1.57E-23 - T[250-376] 3.57E-20 - T[365-478] 1.02E-14 - T[474-605] 3.14E-27 - T[595-714] 4.19E-11 |
| Pfam |
Cadherin (IPR002126) - T[174-253] 2.1E-12 - T[270-356] 1.3E-12 - T[383-476] 4.3E-10 - T[491-592] 1.2E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[250-260] . - T[590-600] . |
| PRINTS |
Cadherin (IPR002126) - T[311-330] 3.2E-26 - T[377-406] 3.2E-26 - T[451-463] 3.2E-26 - T[465-484] 3.2E-26 - T[484-497] 3.2E-26 - T[550-576] 3.2E-26 - T[584-601] 3.2E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 29.6 % | 325 | 9.22E-94 |
| PCD19_HUMAN | 29.519 % | 285 | 1.12E-79 |
| PCD12_HUMAN | 29.225 % | 277 | 4.52E-77 |