- Transcript 'KH2012:KH.C9.335.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.335.v1.A.nonSL5-1
Possible name(s)
PUF60; RBM17
Gene model
Location
KhC9 [1,325,808 / 1,332,031]
Amino acid sequence
Length: 394
>KH.C9.335.v1.A.nonSL5-1
DDFTVFLVFTICVTSKMSLYDGLGVDNTQGKATGWSPSFQMLKTQLQARKATLTKAKNEK
GRLSSSVAPVVDFTKLRQDDTSLEDMRDAKPSVFLGGEILEKFADEYDPLHPNDYDHMTK
KDRERKENQQDAGRDRELEERRKRRAERHAKKGPDDELPRPMGFGDEVDFEREKKKRVMG
NKVAIAPPTVLIEADKQSLPTDRSMSPPLPSAVGTQFARNLAGSVAHKIMAKYGFKEGLG
LGKDNKGMSHALQIEKTSKRGGKIISSEQIEQQLEEEYKKEQQEKKSVTDLLKNPTKVIC
LRNMVGPGEVDDDLEAETKEECSKYGSVNKCLIFEMHGVTEDEAIRIFIEFDRMESAIKS
LVDMNGRFFGGRTVKASFYDVEKFKSFQLSDPIT
Nucleotide sequence
Length: 2,414
>KH2012:KH.C9.335.v1.A.nonSL5-1
ATTAAATATATGAATTTTTGTTTTAGAAATACAAATTGCGAGATCTATTAGACAAGGAGT
GAAAAAATCGCAACCAGTATCCTATTATAAATCATTGAATATGCCCACTAAAGACTAGCG
TTCTGCGTACCGTATACGTCATTCTAGGATTGAAGTATAAGACGATTTTACGGTATTTTT
GGTTTTCACCATTTGTGTAACATCAAAGATGTCCCTCTACGATGGATTGGGCGTTGATAA
CACTCAGGGCAAAGCAACTGGATGGTCACCTAGTTTTCAAATGCTAAAAACCCAACTTCA
AGCCCGCAAAGCAACACTGACAAAAGCAAAAAATGAAAAAGGAAGATTGTCATCTTCTGT
TGCCCCAGTGGTTGACTTCACTAAACTAAGGCAGGATGATACTTCATTGGAGGATATGAG
AGATGCAAAACCGAGTGTTTTTCTTGGCGGTGAAATACTTGAAAAGTTCGCTGACGAATA
TGATCCGTTACACCCCAACGATTATGATCACATGACCAAAAAGGACAGAGAGCGGAAGGA
AAATCAGCAAGATGCTGGGAGGGATCGTGAGCTTGAAGAGAGGAGGAAGAGAAGAGCTGA
GAGACACGCTAAGAAAGGTCCAGATGATGAACTTCCTCGTCCCATGGGATTTGGAGATGA
AGTTGATTTTGAACGAGAGAAAAAGAAACGAGTTATGGGAAACAAAGTAGCGATCGCACC
GCCCACTGTTCTTATTGAAGCCGACAAGCAATCTCTTCCAACAGATCGATCAATGTCTCC
CCCACTGCCAAGCGCTGTTGGAACTCAGTTTGCCAGGAATCTCGCTGGATCTGTTGCGCA
TAAAATCATGGCGAAGTATGGATTTAAGGAAGGGCTGGGTCTCGGTAAAGACAACAAGGG
AATGAGTCATGCACTTCAGATCGAGAAGACGAGCAAAAGAGGAGGAAAGATCATCTCAAG
CGAACAGATTGAACAACAACTTGAGGAAGAATATAAAAAAGAACAACAAGAAAAGAAATC
TGTGACGGATCTGCTCAAGAATCCAACTAAAGTTATTTGTTTAAGGAACATGGTTGGTCC
TGGTGAGGTCGACGATGATCTTGAAGCGGAAACAAAAGAAGAATGTTCCAAATATGGAAG
TGTTAATAAGTGTCTTATATTTGAAATGCATGGCGTAACAGAAGACGAAGCGATCCGAAT
ATTTATCGAGTTCGACCGAATGGAATCCGCGATTAAATCATTGGTTGATATGAATGGACG
TTTCTTTGGCGGCCGAACCGTCAAAGCTTCGTTTTATGACGTCGAAAAATTTAAATCATT
TCAGCTATCAGACCCAATTACGTGATGTGTTGCGTCATAATAGACATTGATGTAATCGTC
TATGGGACAATGACACGATAATACGTTATATTATATGTATTGTGTTTATTAGCACTGGCG
TATTGGACCAAGTGAAAACGAATGATCTCGTTTTAAAACCCGTATTCAATCATTATCGGA
TTAGAATACAAACAACGTTATTTTAATATCTTTTTGAATGTAGTGTGTAAGATTTACTAA
ACAAACGGTAAATCGTGGCAAATTATATATAGTACTGTGGCCTGTGGGGTAAGATGGCCC
TGGGATACTGTTACCTCCTAAATCACTCATTTCCTAATTCTGTTACTGTATAGTTAACAA
CGATTTCAAGAGTCGCGGGCTACGGTAAAATAGTTCTTTAAAAATTCCTTGTATGACACC
AAATGGTACGAGAAGAGAATGAACAAATGAATTATATTACCCCACACTGTTGTACATACG
CTAGTAGCTATCGGCATGAATTATTTCAATGTAGGTCGTTTTGGTGTCTTCCACAAAACG
TCTAATATATGCGAGTATGTTTTCACCATGCGGGCGACTGGCTAGACAGGGATTCGAACT
CGCAACCGTCTAACTATACAGCGACTATGCGTTTCTAATGTTAAACTGACCTATAACGAA
TCAGACGCGGGTACGTTATTTACATGCAGCTAATTGCGCACGTCTATTATATACGAATAA
TGCATTAGATCAATATGTGCAAAGTAAGCTGTCATAGTCTGTACAGTGACAAGTATAATA
AGATGATATATTTTTTACCCTTATATAAACGAAAGCAAGATATTGTAAAGTCGTATTTTG
GAACGAGTGTCAAGATGCTGTATATATATACAGTTCTATATTGGCCGTGGTTTAAATATG
AGAAACCATATAGAAAAGGTTTTGGACCAATGCTAGAATAATTTGTGCAATACATACGCC
ATATGTGGTTGCGTCGTTAGGTTAACAGTAAATAGCAACAATCTTATCTCAAATCTAACC
GCTTGAAATGAGTTTTATGCATTATACATATCGTGAACTTAAATCGATGAAAAATAAAGT
TTTTTGTGCATTTT
| PIRSF |
Splicing_factor_SPF45 (IPR016967) - T[17-394] 8.4E-98 |
| SMART |
G_patch_dom (IPR000467) - T[220-266] 2.9E-9 |
| ProSiteProfiles |
G_patch_dom (IPR000467) - T[222-268] 12.083 |
| Pfam |
G_patch_dom (IPR000467) - T[223-263] 8.8E-11 |
| CDD |
SPF45_RRM (IPR034653) - T[295-389] 1.43498E-61 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[296-380] 8.2E-27 |
| SMART |
RRM_dom_euk (IPR003954) - T[298-377] 1.2E-19 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[301-384] 1.0E-14 |
| Pfam |
RRM_dom (IPR000504) - T[319-375] 3.3E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PUF60_HUMAN | 45.631 % | 90.9 | 8.08E-20 |
| SPF45_HUMAN | 46.86 % | 333 | 3.53E-112 |