- Transcript 'KH2012:KH.C9.335.v2....'
Transcript Model
Transcript Id
KH2012:KH.C9.335.v2.A.nonSL7-1
Possible name(s)
PUF60; RBM17
Gene model
Location
KhC9 [1,326,336 / 1,332,031]
Amino acid sequence
Length: 336
>KH.C9.335.v2.A.nonSL7-1
EKGRLSSSVAPVVDFTKLRQDDTSLEDMRDAKPSVFLGGEILEKFADEYDPLHPNDYDHM
TKKDRERKENQQDAGRDRELEERRKRRAERHAKKGPDDELPRPMGFGDEVDFEREKKKRV
MGNKVAIAPPTVLIEADKQSLPTDRSMSPPLPSAVGTQFARNLAGSVAHKIMAKYGFKEG
LGLGKDNKGMSHALQIEKTSKRGGKIISSEQIEQQLEEEYKKEQQEKKSVTDLLKNPTKV
ICLRNMVGPGEVDDDLEAETKEECSKYGSVNKCLIFEMHGVTEDEAIRIFIEFDRMESAI
KSLVDMNGRFFGGRTVKASFYDVEKFKSFQLSDPIT
Nucleotide sequence
Length: 2,080
>KH2012:KH.C9.335.v2.A.nonSL7-1
GAAAAAGGAAGATTGTCATCTTCTGTTGCCCCAGTGGTTGACTTCACTAAACTAAGGCAG
GATGATACTTCATTGGAGGATATGAGAGATGCAAAACCGAGTGTTTTTCTTGGCGGTGAA
ATACTTGAAAAGTTCGCTGACGAATATGATCCGTTACACCCCAACGATTATGATCACATG
ACCAAAAAGGACAGAGAGCGGAAGGAAAATCAGCAAGATGCTGGGAGGGATCGTGAGCTT
GAAGAGAGGAGGAAGAGAAGAGCTGAGAGACACGCTAAGAAAGGTCCAGATGATGAACTT
CCTCGTCCCATGGGATTTGGAGATGAAGTTGATTTTGAACGAGAGAAAAAGAAACGAGTT
ATGGGAAACAAAGTAGCGATCGCACCGCCCACTGTTCTTATTGAAGCCGACAAGCAATCT
CTTCCAACAGATCGATCAATGTCTCCCCCACTGCCAAGCGCTGTTGGAACTCAGTTTGCC
AGGAATCTCGCTGGATCTGTTGCGCATAAAATCATGGCGAAGTATGGATTTAAGGAAGGG
CTGGGTCTCGGTAAAGACAACAAGGGAATGAGTCATGCACTTCAGATCGAGAAGACGAGC
AAAAGAGGAGGAAAGATCATCTCAAGCGAACAGATTGAACAACAACTTGAGGAAGAATAT
AAAAAAGAACAACAAGAAAAGAAATCTGTGACGGATCTGCTCAAGAATCCAACTAAAGTT
ATTTGTTTAAGGAACATGGTTGGTCCTGGTGAGGTCGACGATGATCTTGAAGCGGAAACA
AAAGAAGAATGTTCCAAATATGGAAGTGTTAATAAGTGTCTTATATTTGAAATGCATGGC
GTAACAGAAGACGAAGCGATCCGAATATTTATCGAGTTCGACCGAATGGAATCCGCGATT
AAATCATTGGTTGATATGAATGGACGTTTCTTTGGCGGCCGAACCGTCAAAGCTTCGTTT
TATGACGTCGAAAAATTTAAATCATTTCAGCTATCAGACCCAATTACGTGATGTGTTGCG
TCATAATAGACATTGATGTAATCGTCTATGGGACAATGACACGATAATACGTTATATTAT
ATGTATTGTGTTTATTAGCACTGGCGTATTGGACCAAGTGAAAACGAATGATCTCGTTTT
AAAACCCGTATTCAATCATTATCGGATTAGAATACAAACAACGTTATTTTAATATCTTTT
TGAATGTAGTGTGTAAGATTTACTAAACAAACGGTAAATCGTGGCAAATTATATATAGTA
CTGTGGCCTGTGGGGTAAGATGGCCCTGGGATACTGTTACCTCCTAAATCACTCATTTCC
TAATTCTGTTACTGTATAGTTAACAACGATTTCAAGAGTCGCGGGCTACGGTAAAATAGT
TCTTTAAAAATTCCTTGTATGACACCAAATGGTACGAGAAGAGAATGAACAAATGAATTA
TATTACCCCACACTGTTGTACATACGCTAGTAGCTATCGGCATGAATTATTTCAATGTAG
GTCGTTTTGGTGTCTTCCACAAAACGTCTAATATATGCGAGTATGTTTTCACCATGCGGG
CGACTGGCTAGACAGGGATTCGAACTCGCAACCGTCTAACTATACAGCGACTATGCGTTT
CTAATGTTAAACTGACCTATAACGAATCAGACGCGGGTACGTTATTTACATGCAGCTAAT
TGCGCACGTCTATTATATACGAATAATGCATTAGATCAATATGTGCAAAGTAAGCTGTCA
TAGTCTGTACAGTGACAAGTATAATAAGATGATATATTTTTTACCCTTATATAAACGAAA
GCAAGATATTGTAAAGTCGTATTTTGGAACGAGTGTCAAGATGCTGTATATATATACAGT
TCTATATTGGCCGTGGTTTAAATATGAGAAACCATATAGAAAAGGTTTTGGACCAATGCT
AGAATAATTTGTGCAATACATACGCCATATGTGGTTGCGTCGTTAGGTTAACAGTAAATA
GCAACAATCTTATCTCAAATCTAACCGCTTGAAATGAGTTTTATGCATTATACATATCGT
GAACTTAAATCGATGAAAAATAAAGTTTTTTGTGCATTTT
| PIRSF |
Splicing_factor_SPF45 (IPR016967) - T[22-336] 6.7E-89 |
| SMART |
G_patch_dom (IPR000467) - T[162-208] 2.9E-9 |
| ProSiteProfiles |
G_patch_dom (IPR000467) - T[164-210] 12.083 |
| Pfam |
G_patch_dom (IPR000467) - T[165-205] 7.0E-11 |
| CDD |
SPF45_RRM (IPR034653) - T[237-331] 3.97019E-61 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[238-322] 6.2E-27 |
| SMART |
RRM_dom_euk (IPR003954) - T[240-319] 1.2E-19 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[243-326] 7.6E-15 |
| Pfam |
RRM_dom (IPR000504) - T[261-317] 2.6E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PUF60_HUMAN | 45.631 % | 90.1 | 6.71E-20 |
| SPF45_HUMAN | 45.968 % | 282 | 5.26E-93 |