- Transcript 'KH2012:KH.C3.719.v1....' >
- Transcript 'KH2012:KH.L41.44.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Clone 'cima877857' >
- Transcript 'KH2012:KH.C9.37.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C9.37.v1.A.ND1-1
Possible name(s)
LHCGR; RXFP1; TSHR
Gene model
Location
KhC9 [4,223,449 / 4,226,000]
Amino acid sequence
Length: 652
>KH.C9.37.v1.A.ND1-1
QIPDVCDNICTRRKGRCKRGTFQCGDALNVTVNFKKVCDRRIDCPNGRDEQYCRMGTHQT
RVVACPADPKNMTIKTANLCDGKPECYDLSDECGGVCSIEQAFCKFQNIFLNQSDSLVYR
CGNGYPLTTQDICDGTWSKCQPRVEHEESQCDGRHFCGGRNINSSRLISYDKALVCDGYR
DCADGSDEWYCPQRFNCTSSIKPSSVPRTFTFDDFNDCVDGSDECPPYLDWNWLSSRNEM
ISVIFFRVWVWIMAVMALLGNGYVIAKTCQRAKKLLKASAVAKANHFLVFNLAVSDFLMG
VYLICIAIYSAVFSGRYCYEDEKWRTGSSCQFLGGLSVVASEASVLILAVMTCVRLYSVF
MPFRSRNLKFWTVSICVMIVWGLSVCLAVLPMYALTVIDGAWLPSKFFNSTIVPIKSAQN
FMDRMEVYVLNYSENATRSNGTVQWSTIQTFLNVHSPKNRIMGLYGYYSSSSVCISRLFV
TPLQQGWRISITIVSINFFVFVFIALAYLAIYKRAKQQPRKNDTDRSVKMQSKIFRLVTT
DFFCWVPICIMAFIHFARVANLDGTAYVIVAVVLMPINSVLNPLLYSNALDNLLKKTLLA
WRASRQKAALLQGEMFQRFKLQESAGTSDKAESDNQPESIHATPVRTADSKL
Nucleotide sequence
Length: 2,484
>KH2012:KH.C9.37.v1.A.ND1-1
CCCAAATACCGGACGTATGTGACAACATATGCACCAGGCGTAAGGGTCGTTGCAAACGGG
GGACATTTCAATGCGGTGATGCATTAAATGTTACTGTAAACTTTAAAAAAGTTTGTGACA
GGAGAATTGACTGCCCTAATGGTCGCGACGAACAGTATTGCCGAATGGGGACACATCAGA
CCCGAGTAGTAGCATGTCCAGCGGACCCAAAGAATATGACAATAAAAACAGCGAATCTAT
GCGACGGCAAACCAGAATGTTACGACCTCAGTGACGAATGTGGGGGTGTTTGCAGCATCG
AGCAGGCGTTTTGCAAATTCCAAAATATCTTTCTAAATCAGTCTGATTCGCTCGTGTACA
GATGCGGAAATGGATACCCACTCACAACACAGGATATTTGCGATGGAACTTGGTCCAAAT
GTCAACCTAGAGTCGAACACGAGGAGTCTCAATGCGACGGACGACATTTCTGTGGTGGTA
GGAACATTAACTCATCTAGATTAATAAGTTATGACAAGGCGTTGGTCTGTGACGGATACC
GAGACTGTGCAGATGGCTCTGATGAATGGTATTGCCCTCAACGATTCAACTGCACTTCTA
GTATAAAGCCAAGTTCAGTTCCACGAACTTTTACCTTCGACGACTTCAACGATTGTGTCG
ATGGTAGCGATGAATGTCCTCCATATCTCGACTGGAACTGGTTATCTTCCCGTAACGAAA
TGATCAGCGTTATTTTCTTCAGAGTATGGGTCTGGATTATGGCAGTTATGGCTCTGTTGG
GTAATGGATACGTCATCGCGAAAACATGCCAGCGCGCTAAAAAGCTTTTGAAAGCATCAG
CCGTTGCTAAAGCAAACCACTTTCTTGTCTTCAACCTAGCTGTTTCCGATTTCCTAATGG
GAGTATACCTGATATGCATAGCTATTTACAGCGCGGTGTTCTCTGGTCGATACTGCTATG
AGGATGAGAAATGGCGAACCGGATCTTCCTGTCAGTTCCTAGGTGGGCTCTCAGTGGTTG
CTAGCGAGGCGTCAGTTCTTATATTAGCTGTTATGACGTGCGTGAGACTGTACTCCGTTT
TTATGCCTTTTCGATCAAGAAACTTGAAGTTTTGGACCGTAAGTATATGCGTTATGATTG
TATGGGGTCTATCAGTTTGTCTTGCAGTTCTCCCCATGTATGCTCTCACTGTGATAGACG
GGGCATGGCTACCAAGCAAGTTTTTCAATTCGACCATCGTTCCAATAAAAAGTGCTCAGA
ATTTTATGGATCGGATGGAAGTGTACGTTTTAAACTACTCAGAAAATGCGACACGTTCCA
ATGGAACTGTACAATGGTCTACCATCCAAACCTTCCTAAACGTCCACAGTCCAAAAAATA
GAATCATGGGCTTGTATGGCTATTATTCGTCGAGCAGTGTTTGCATATCCAGACTGTTCG
TGACTCCTTTGCAACAAGGTTGGAGAATTTCCATCACAATAGTTTCAATAAACTTTTTCG
TGTTCGTCTTTATTGCATTGGCGTATCTGGCAATATACAAAAGAGCAAAACAACAGCCTC
GCAAGAACGACACCGACCGGTCTGTTAAAATGCAGAGCAAGATATTTCGGCTAGTAACCA
CAGATTTTTTCTGCTGGGTGCCTATCTGCATCATGGCGTTCATTCATTTCGCACGAGTTG
CAAATCTTGACGGTACAGCGTACGTTATAGTCGCAGTTGTTCTTATGCCAATCAACAGTG
TTTTAAATCCCTTGTTGTATTCCAACGCTCTTGACAATCTGCTAAAAAAGACGTTATTGG
CTTGGAGAGCATCTAGACAGAAAGCTGCCTTGCTTCAAGGTGAAATGTTTCAACGTTTTA
AACTTCAGGAGTCTGCCGGGACATCTGACAAGGCAGAATCGGACAATCAACCTGAATCAA
TTCACGCCACCCCTGTGAGAACTGCTGACTCAAAATTATAGGCACATATTACCAGATTAA
AGTTGCAGTTTTTAAAAGCTATTTTTGTTATAAAAACTCTTTTTTTACTTTTACGGTATA
CAGTATTGCTGGGTAGGATGGGATACCTAATTAAATCCCATGTTTCCGGATCGTATTTTA
AACAATTATTAATGTTGTTTAGACATGCGTGATACGGTTATATCAATCTGTAACTTTTTA
TATATTTACTACCAAATGGTAACAGAAGAGAATAAAAATATAACCCATCTTACCCCACCA
TATTAAAGATAACAGCAACATAAAGTAACAAAATAACGTAGACGAATGGTAATGTCACCC
GAATATAAATATATTTCTTATTTTTGTGGTTTTAACATATCGTGTTAAAAAAACTATTTT
CATATAAAGACGACCATTCTGATATTTTGTCCGGGATTTCAATCGTTAAGACCTTTACAT
CTGGCGTGTGGTTTTCAGTCACACTGCAGCTTAAAGCAATAAGTGCCACGTGGAAACTAC
AAACTATTATTTGATTGGTTCATT
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[16-54] 9.663 - T[150-192] 9.088 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[16-55] 3.1E-5 - T[64-95] 0.28 - T[150-193] 0.0041 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[16-53] 5.89E-7 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[17-53] 4.75828E-4 - T[171-191] 1.69691E-5 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[79-610] 4.9E-99 |
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[245-269] 2.5E-12 - T[285-306] 2.5E-12 - T[337-359] 2.5E-12 - T[372-393] 2.5E-12 - T[530-554] 2.5E-12 - T[568-594] 2.5E-12 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[260-586] 23.742 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[281-586] 2.5E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|