- Transcript 'KH2012:KH.C9.37.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C9.37.v2.A.ND2-1
Possible name(s)
LHCGR; RXFP1; TSHR
Gene model
Location
KhC9 [4,222,444 / 4,226,000]
Amino acid sequence
Length: 204
>KH.C9.37.v2.A.ND2-1
LNTNNTSCGNGSFSCANGNCIHARFVCDHHNDCGDKSDERGCRIRLNTCWPWQSKCNSNR
TCSRGYFQVVCDRRIDCPNGRDEQYCRMGTHQTRVVACPADPKNMTIKTANLCDGKPECY
DLSDECGGVCSIEQANINSSRLISYDKALVCDGYRDCADGSDEWYCPQRFNCTSSIKPSS
VPRTFTFDDFNDCVDAVFAYPDCS
Nucleotide sequence
Length: 1,656
>KH2012:KH.C9.37.v2.A.ND2-1
CTAAATACAAACAACACATCTTGTGGAAACGGATCGTTTAGCTGTGCCAATGGTAACTGT
ATACACGCCAGATTTGTTTGTGACCACCATAATGATTGTGGAGACAAAAGCGACGAAAGA
GGATGTCGGATACGTTTAAATACATGTTGGCCATGGCAAAGTAAATGCAACAGTAATAGA
ACTTGCTCGAGGGGTTATTTTCAGGTTGTTTGTGACAGGAGAATTGACTGCCCTAATGGT
CGCGACGAACAGTATTGCCGAATGGGGACACATCAGACCCGAGTAGTAGCATGTCCAGCG
GACCCAAAGAATATGACAATAAAAACAGCGAATCTATGCGACGGCAAACCAGAATGTTAC
GACCTCAGTGACGAATGTGGGGGTGTTTGCAGCATCGAGCAGGCGAACATTAACTCATCT
AGATTAATAAGTTATGACAAGGCGTTGGTCTGTGACGGATACCGAGACTGTGCAGATGGC
TCTGATGAATGGTATTGCCCTCAACGATTCAACTGCACTTCTAGTATAAAGCCAAGTTCA
GTTCCACGAACTTTTACCTTCGACGACTTCAACGATTGTGTCGATGCAGTGTTTGCATAT
CCAGACTGTTCGTGACTCCTTTGCAACAAGGTTGGAGAATTTCCATCACAATAGTTTCAA
TAAACTTTTTCGTGTTCGTCTTTATTGCATTGGCGTATCTGGCAATATACAAAAGAGCAA
AACAACAGCCTCGCAAGAACGACACCGACCGGTCTGTTAAAATGCAGAGCAAGATATTTC
GGCTAGTAACCACAGATTTTTTCTGCTGGGTGCCTATCTGCATCATGGCGTTCATTCATT
TCGCACGAGTTGCAAATCTTGACGGTACAGCGTACGTTATAGTCGCAGTTGTTCTTATGC
CAATCAACAGTGTTTTAAATCCCTTGTTGTATTCCAACGCTCTTGACAATCTGCTAAAAA
AGACGTTATTGGCTTGGAGAGCATCTAGACAGAAAGCTGCCTTGCTTCAAGGTGAAATGT
TTCAACGTTTTAAACTTCAGGAGTCTGCCGGGACATCTGACAAGGCAGAATCGGACAATC
AACCTGAATCAATTCACGCCACCCCTGTGAGAACTGCTGACTCAAAATTATAGGCACATA
TTACCAGATTAAAGTTGCAGTTTTTAAAAGCTATTTTTGTTATAAAAACTCTTTTTTTAC
TTTTACGGTATACAGTATTGCTGGGTAGGATGGGATACCTAATTAAATCCCATGTTTCCG
GATCGTATTTTAAACAATTATTAATGTTGTTTAGACATGCGTGATACGGTTATATCAATC
TGTAACTTTTTATATATTTACTACCAAATGGTAACAGAAGAGAATAAAAATATAACCCAT
CTTACCCCACCATATTAAAGATAACAGCAACATAAAGTAACAAAATAACGTAGACGAATG
GTAATGTCACCCGAATATAAATATATTTCTTATTTTTGTGGTTTTAACATATCGTGTTAA
AAAAACTATTTTCATATAAAGACGACCATTCTGATATTTTGTCCGGGATTTCAATCGTTA
AGACCTTTACATCTGGCGTGTGGTTTTCAGTCACACTGCAGCTTAAAGCAATAAGTGCCA
CGTGGAAACTACAAACTATTATTTGATTGGTTCATT
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[6-44] 3.14E-11 - T[48-86] 1.84E-5 - T[129-166] 7.33E-6 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[7-42] 1.3E-11 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[7-43] 12.887 - T[48-87] 8.988 - T[118-167] 8.575 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[7-44] 3.0E-12 - T[48-88] 0.021 - T[97-128] 0.28 - T[129-168] 0.014 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[8-42] 8.66626E-9 - T[146-166] 0.00271502 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[18-39] 7.1E-16 - T[62-83] 7.1E-16 - T[104-125] 7.1E-16 - T[142-163] 7.1E-16 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[20-42] . |
| Protein Name | Identity | Bit Score | e-value |
|---|