- Transcript 'Moocci.CG.ELv1_2.S19...' >
- Transcript 'KH2012:KH.S425.3.v1....' >
- Transcript 'KH2012:KH.C9.417.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.417.v1.A.SL1-1
Possible name(s)
PCDH18; PCDH19; PCDHGC4
Gene model
Location
KhC9 [3,852,921 / 3,859,273]
Amino acid sequence
Length: 919
>KH.C9.417.v1.A.SL1-1
DMTSKATYSRIYKICIMLSAVLQIAIASPPEKRTIRIQFLEEQPEATVVYNLKEDLLASQ
REGVYFKMLSQYMTSGVDITDDVTEWVQLDENSGIVTVNTPVDRETMCDADDTQPCVIHV
KIARKPRLHFLMIDLELLVKDINDHAPIFPISPIITVNVSEAVPMGTKISLDKYLATDDD
VGRNKDIVYVATSSDNFGIHQYKDETGAPHLELVVADELDHETAATEDLIITASDRGTPT
LKNHVTLRIGILDANDNAPAFDRPLYTLNLRENLPRGEIITSVQAHDEDSGTFGQVRYFV
PASGNSQTARKLIRVDPITGDVMLKQPLDREKHNNIRFVIGARDMGKEAKTGKTMLEIRV
ADVNDNFPIIHVNIIVDYSVGNTAYVPESARIGTYVASISANDVDIGINGDVTIETSVEG
YAAGRPADFSPNADSLQSYFSRSDGGILSTGFPLDREDIPMFVVRISACDHGMPARCSEQ
NLTIIVLDENDHAPAFVNPVKALSLREDALKGTHLVKMSANDADAVYLPAMRMSKTKERN
IENSTNGDITYELHGGKGCFSINPHSGVITLVGAPDYEARKLWKLIVTAKDGGNPSLSTN
SSLDVNVLDVNDNSPVFTMPAVSNSTFVATILSDNVIIKINAIDYDQGAHSDVWYSLVSE
NGEKPPKDFILNQLSGDFRLNFSNPKMSEMLGLHAIVVKAQDLGSPPLKSEIIFYVEVTD
LPYAQLMRNTQSPQNTRPVAGNVTMILIVSLGSATLLLVAILACVVVRCKRENKEIRTYS
CRNAESKKGWYPTPTHESLTADVVVSSSNHLNASRDSNLNNLPWSPHSDKSVMNHPHILI
KKSNSLSTLSQRTIDRKMNSFSRSEARKAALPQMPTLQADGDSGKGESDQDSGSFEGKEA
LQRETAHQERPSCCRTALL
Nucleotide sequence
Length: 3,919
>KH2012:KH.C9.417.v1.A.SL1-1
ATTGCTGTTAGTTAAAATATCGTGAGATATGACGTCTAAGGCGACGTATTCACGGATATA
CAAAATATGTATAATGCTAAGTGCTGTATTACAAATTGCCATCGCCTCGCCTCCTGAGAA
AAGGACGATTAGAATACAGTTTCTTGAAGAACAACCAGAAGCCACCGTGGTATACAACTT
AAAAGAAGATTTACTGGCGTCCCAGAGAGAAGGGGTGTACTTCAAAATGCTGAGTCAGTA
TATGACGTCAGGGGTTGATATAACTGATGACGTCACTGAGTGGGTACAACTGGACGAGAA
CTCGGGTATTGTGACGGTAAACACACCGGTTGACCGTGAAACAATGTGTGATGCTGATGA
TACGCAGCCGTGTGTTATTCATGTAAAGATTGCCAGAAAACCTCGTCTTCATTTCCTCAT
GATCGACTTGGAACTTTTGGTCAAGGATATCAACGACCATGCTCCAATTTTTCCGATCAG
TCCTATTATTACAGTCAATGTCAGCGAAGCAGTTCCTATGGGCACCAAAATAAGCTTGGA
CAAGTACTTGGCAACGGATGACGATGTCGGTCGCAACAAAGACATCGTATATGTCGCAAC
CAGCAGCGATAACTTCGGTATCCATCAGTACAAGGACGAAACTGGAGCACCGCATCTTGA
ACTGGTAGTCGCCGACGAACTTGATCACGAAACGGCTGCAACTGAAGATTTGATAATTAC
TGCATCGGACAGAGGAACACCGACGTTAAAAAATCATGTAACTTTGCGCATTGGAATACT
CGATGCAAACGACAACGCCCCAGCATTTGATAGACCACTTTACACTCTCAACTTGAGAGA
GAATCTTCCGCGAGGTGAAATTATAACCAGTGTACAGGCGCATGACGAAGACAGCGGAAC
GTTCGGGCAAGTTCGTTACTTTGTGCCGGCTTCTGGAAACTCTCAGACCGCGAGAAAATT
AATAAGAGTCGATCCTATCACCGGTGACGTTATGCTGAAACAACCCCTTGACAGGGAAAA
GCACAACAACATTCGATTCGTGATTGGAGCCAGAGATATGGGAAAAGAGGCCAAGACAGG
AAAAACAATGCTGGAAATACGTGTTGCCGATGTAAACGATAATTTCCCGATAATTCACGT
GAACATCATCGTCGATTATTCAGTTGGAAACACTGCTTATGTGCCGGAGTCTGCTCGAAT
TGGAACGTACGTCGCTTCAATAAGCGCCAATGACGTGGACATTGGTATAAATGGTGACGT
GACAATTGAAACTTCTGTGGAAGGATACGCGGCTGGCAGACCTGCTGATTTCAGCCCAAA
CGCTGACAGTCTTCAAAGCTACTTTAGCCGGAGCGACGGCGGGATCTTGAGCACCGGTTT
CCCGCTGGACAGAGAGGATATCCCGATGTTTGTGGTTCGCATTAGCGCATGTGATCATGG
AATGCCTGCAAGGTGTTCGGAACAAAACCTAACTATCATAGTGCTGGACGAAAACGACCA
TGCACCAGCATTTGTCAATCCTGTAAAAGCACTATCCTTGCGAGAGGACGCTTTGAAAGG
AACGCACCTTGTCAAGATGTCAGCCAACGACGCCGACGCGGTGTACTTACCGGCCATGCG
CATGTCAAAGACAAAGGAAAGGAATATAGAGAACTCTACAAATGGAGATATCACGTACGA
GCTGCACGGCGGAAAAGGTTGTTTCAGCATCAATCCCCACAGCGGGGTCATTACACTCGT
TGGTGCACCTGATTACGAAGCTAGGAAACTTTGGAAGTTGATTGTCACTGCTAAAGACGG
AGGCAATCCTTCGCTCTCAACCAACAGCAGTTTGGACGTCAATGTTCTTGATGTAAACGA
CAACTCACCTGTGTTTACAATGCCGGCTGTTTCTAACAGCACGTTCGTTGCTACCATTCT
GAGCGACAATGTCATCATTAAAATCAATGCGATCGACTACGATCAAGGCGCCCATTCCGA
CGTTTGGTATTCCCTGGTTTCCGAGAACGGTGAGAAGCCACCGAAGGACTTCATTTTGAA
CCAGTTATCTGGAGACTTCCGTCTTAACTTCAGCAACCCAAAAATGTCGGAAATGTTGGG
CTTACACGCCATTGTAGTTAAGGCACAAGACTTGGGATCACCGCCGCTAAAATCGGAGAT
CATATTTTACGTAGAGGTTACAGATCTACCGTACGCTCAGTTAATGCGGAACACCCAAAG
TCCACAAAACACTCGACCCGTTGCTGGGAACGTTACAATGATTCTGATTGTATCTTTGGG
GTCAGCAACCCTCCTGCTGGTAGCTATACTGGCTTGCGTGGTGGTCCGTTGCAAAAGAGA
GAATAAGGAGATTCGCACATACAGCTGCCGGAACGCAGAATCCAAGAAAGGTTGGTACCC
AACTCCAACTCACGAAAGTTTGACTGCTGATGTTGTCGTCTCATCGTCGAACCACCTCAA
TGCTTCAAGAGATTCAAACTTAAACAACCTTCCATGGAGTCCACATTCTGACAAAAGCGT
GATGAATCATCCCCACATTTTAATCAAGAAATCAAACAGTCTTTCCACGCTTTCTCAGAG
GACGATCGACAGGAAAATGAATAGTTTTTCCAGGAGCGAAGCACGTAAAGCTGCGTTACC
ACAAATGCCAACTTTGCAAGCCGACGGCGATAGCGGTAAAGGAGAAAGCGACCAAGATTC
TGGAAGTTTCGAAGGAAAAGAAGCTCTGCAACGCGAAACAGCCCATCAGGAACGCCCGAG
TTGTTGTCGAACAGCATTGTTGTGATGGAAATCCCAGAGGCGGGCAACATGGGACCACTC
TGTACGAACATCTGTCGACAGTATGGCCACAGCGATGCATGCTGGATGCACGTACTTGAC
GATCAGACTCACCAAGGATACGGGCAGTACCCTGAACAGAGCAGACCGACTACACCATCC
TACGCTTACTACGCCTCTCAGAACGGGAACAGTCCTCGGGGCTTGGAAACTATCAGTGAA
ACACAGCCCCTGCATTCTGTGCTCGGTAGCGCCACCGACGAACAAGCGGACGATTATATT
GACGAGACCAGCCACATGGTGCCGTACCAGTCCTACTACCCAGGCAACAGCCAGAGCCCG
GCTATGCACGAACAATACTACCCTGCTACATCCTACACCGTTCCTCGTGGTGGAAGTCAC
CCCATGCACGCATCTCATGATGCAGCATCGCATATACCTTATCCCCAGCAAAGATACTCG
ACCACCAACCTAAGCCATTCCGCCTCTGATCTTTTCCATGACGGTATGGTCGGTGCATAC
CACCTCCACGTCACACCTGGTTCATCATACGGCCGTACGTCACCGTGTAGCCGTGGCAAC
AGCGATTACGTCACGACGTCTCGCGTAGCCAGTCCTGTCACTGTACATTCTCATGACGCC
GCCCTTAAGCGAAGGTCGACTACTTCCCTACATGGTGAACTTTTACATCGCCGTTTCCTA
GCTGCCGCGCATCACCCTACGTCACGTGCTGATGACGTACATGTGACGTCACACACGCCA
ACCTCACAATACGGCGAGGTGACGATGCAAGAAACGCAGCAAATAATAGACGATATCGAC
CAGTTGATTGACCATTAACTCCTGTGCATTTATTTCCTTATACCGTTCCATTTAACCTAC
TCAGAACAATACAGCAACCTATCTAGCCCCAGTAAAATATACAGTGTATATATTAAAACT
GGAAGTTCACGCGTTGGGAAACATCCTGTATAATCTGGCTGGTGTAAGCAATCATATTAT
TAATTTTCGTGTATTTTTATACCAACCTTATGCATTGTACCGAATTATTTTCCACTGTAC
ACCTGATCGTTCAAGCATTGGTTGTCAGGATATGTTTGCGTAATAGAATAACATAACCCA
CGTTTGCGTGGGAACTATA
| Pfam |
Cadherin_N (IPR013164) - T[36-122] 4.0E-6 |
| SMART |
Cadherin (IPR002126) - T[56-147] 0.22 - T[174-259] 6.6E-13 - T[283-368] 5.6E-20 - T[399-494] 1.1E-12 - T[533-615] 1.1E-21 - T[640-722] 0.0037 |
| PRINTS |
Cadherin (IPR002126) - T[85-104] 2.0E-29 - T[261-290] 2.0E-29 - T[335-347] 2.0E-29 - T[349-368] 2.0E-29 - T[494-507] 2.0E-29 - T[565-591] 2.0E-29 - T[599-616] 2.0E-29 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[142-253] 9.68E-16 - T[249-375] 4.43E-26 - T[363-488] 1.83E-14 - T[484-621] 1.57E-23 - T[610-720] 1.7E-14 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[249-259] . - T[605-615] . |
| Pfam |
Cadherin (IPR002126) - T[266-360] 2.0E-14 - T[383-487] 3.0E-7 - T[505-608] 1.9E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 27.665 % | 277 | 1.78E-78 |
| PCD19_HUMAN | 30.159 % | 275 | 1.02E-77 |
| PCDGL_HUMAN | 29.867 % | 273 | 4.99E-78 |