- Region 'REG00000454' >
- Transcript 'KH2012:KH.C2.313.v1....' >
- Transcript 'KH2012:KH.C9.616.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.616.v1.A.SL1-1
Possible name(s)
LHX1; LMX1A; LMX1B
Gene model
Location
KhC9 [2,933,012 / 2,948,044]
Amino acid sequence
Length: 625
>KH.C9.616.v1.A.SL1-1
MLRSSNDEKLKHRQTKLATSGKAATPMHVSNREMGYNGVNDVGLLGKDRFPDERFMTSSS
VTSSNSWSQVDELGDFGQFDSLSNTSPVDLFSETTNVAQQEKSTQGMKAEASPTDISSCR
KSPGSCKSEEHFSATKMNENGIDLCINMDPQCENSQTSQYSQMSICQGCDYLIEDQYLLN
IGGFSWHESCAKCVICRLKLQQSCFFSDGQLYCKKDYQQTRKKCSGCGSKIESEELVMRV
ATSGYVYHVGCFACVTCKRLLRKGDEFVMNRHNEKRAKSCTRFDLQCKNCWSERDTLLKA
GHDSQMIKSLPCAPDAKTSSLPSPGVSSDVTDMTSPKSPHCVLSPKSDDDDATSSDDEST
VGNFNSSKDDVGEDGKRPRDNDDVDSKDGKRSKRPRTILNAVQRRAFKAAFEVTPKPCRK
VRETLAKDTGLTVRVVQVWFQNQRAKMKKLAKRQQSQEAAAQKAREEFGYHVFDQMGSMP
HQIQHMMPGSEGMMEKMFGQFHHQQVHGQINGRRMGVPWDQHPNDAIGFGQGQLYHEASG
YQENMAVPQNVTITSQMDGMIPQPMRIPLNHNMTPHPPAYQGNMQIHDVIHPADMHVTSS
PGNHPNDVTTPIDGLYSMQNNYFSS
Nucleotide sequence
Length: 2,195
>KH2012:KH.C9.616.v1.A.SL1-1
TTTTTCACAGGTGTTTTTTTTAAATTATAAAGCGACTGACTTTTAATCGGAAGATCTAGT
GTTAAATGCTGCGTTCTTCTAACGACGAAAAACTTAAACATCGTCAGACGAAACTTGCAA
CAAGCGGTAAAGCAGCGACCCCGATGCACGTTTCAAATCGCGAAATGGGCTACAACGGCG
TTAACGACGTAGGCTTGTTAGGCAAAGATCGCTTTCCCGATGAACGCTTCATGACGTCAT
CAAGTGTGACGTCATCAAACTCGTGGTCGCAGGTGGACGAGCTGGGAGACTTTGGTCAGT
TCGATAGTTTGTCCAATACATCACCGGTTGATTTGTTCAGCGAAACTACTAACGTTGCCC
AGCAAGAAAAATCGACGCAAGGCATGAAAGCTGAAGCTTCTCCAACAGATATATCGTCGT
GTAGAAAATCTCCTGGATCATGCAAAAGCGAAGAGCATTTTTCTGCCACGAAAATGAACG
AAAACGGGATTGATCTATGCATCAATATGGACCCGCAATGCGAAAATAGCCAGACATCAC
AATACTCGCAAATGAGTATTTGCCAAGGATGTGATTATCTTATCGAGGATCAGTATTTAC
TCAATATTGGTGGATTTTCGTGGCATGAAAGTTGCGCGAAGTGCGTCATCTGCCGGTTAA
AACTACAGCAATCGTGTTTCTTTAGCGATGGCCAACTTTATTGCAAGAAAGACTATCAAC
AAACTAGAAAGAAATGCTCTGGCTGTGGTTCAAAGATTGAAAGTGAAGAGTTAGTCATGC
GTGTCGCTACGTCAGGATATGTGTATCACGTGGGTTGCTTCGCATGCGTGACGTGCAAGC
GGTTATTACGTAAAGGGGACGAGTTCGTGATGAACAGGCACAACGAGAAGCGAGCGAAAT
CGTGCACGAGGTTTGATCTACAGTGTAAAAACTGCTGGAGCGAGCGAGACACTTTATTAA
AAGCTGGTCACGACTCACAAATGATAAAATCGTTACCTTGCGCTCCTGATGCAAAGACAT
CGAGTCTTCCCTCTCCAGGTGTCAGCAGTGACGTCACAGATATGACGTCACCGAAGAGTC
CACATTGTGTTTTATCACCGAAAAGTGATGACGACGATGCTACGTCATCCGATGACGAAT
CAACTGTCGGGAACTTCAACTCGTCGAAAGATGACGTGGGCGAGGATGGAAAAAGACCAC
GTGATAACGATGACGTAGACAGCAAGGACGGCAAGCGATCAAAGCGACCACGAACTATTC
TTAACGCAGTTCAACGTAGAGCTTTTAAAGCTGCTTTTGAAGTTACACCCAAGCCTTGTC
GAAAGGTTCGTGAAACGCTTGCCAAAGACACTGGGTTGACCGTGAGAGTGGTACAAGTGT
GGTTCCAAAACCAAAGGGCGAAAATGAAGAAGTTAGCCAAGCGACAACAAAGTCAAGAAG
CTGCGGCACAAAAGGCGAGGGAAGAATTCGGTTACCATGTATTTGATCAGATGGGTTCTA
TGCCTCACCAAATCCAGCATATGATGCCGGGTAGCGAGGGCATGATGGAGAAAATGTTTG
GCCAGTTTCATCACCAGCAAGTACACGGTCAAATTAACGGACGCCGCATGGGTGTGCCAT
GGGACCAGCATCCCAACGATGCGATCGGATTTGGACAGGGTCAATTGTACCACGAAGCAA
GCGGTTACCAAGAAAATATGGCGGTGCCTCAAAATGTAACTATTACGTCACAAATGGATG
GGATGATTCCCCAACCAATGAGAATCCCCCTCAATCACAACATGACGCCCCACCCCCCTG
CATATCAGGGCAATATGCAAATTCATGACGTCATCCATCCTGCTGACATGCATGTGACGT
CATCGCCTGGGAATCACCCGAATGACGTAACGACGCCCATAGACGGGTTGTACTCGATGC
AGAATAATTATTTTAGTTCGTAAATTTTTAATACCTCTTATTCTCGTTTTAAATATATAC
ATCTTTTCGTCACAGCTGTTTTTATATTAAATTAAATCCCAAATGTTTGCGGTTTATGTT
GATCTGAATGGCAATAGCGTAAAACGTAACTCGTCAGGAAAAATTAGGAAAACACTGAAG
CACTTTGATGTAATTTAAATTCTTTGTTATTTTTGCAAAACGATTTTTTTGCGTGTGTGT
TCTGATATGTGACGTAATAAAGTGTGAATTAAAAT
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[164-223] 12.553 - T[224-297] 7.851 |
| SMART |
Znf_LIM (IPR001781) - T[165-216] 1.4E-12 - T[223-280] 2.8E-6 |
| Pfam |
Znf_LIM (IPR001781) - T[166-220] 6.1E-11 - T[224-291] 2.3E-7 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[224-261] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[383-450] 9.41E-19 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[390-450] 16.86 |
| SMART |
Homeobox_dom (IPR001356) - T[392-454] 2.4E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[393-449] 1.06431E-18 |
| Pfam |
Homeobox_dom (IPR001356) - T[393-449] 6.3E-17 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[425-448] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LMX1A_HUMAN | 41.522 % | 204 | 7.35E-60 |
| LMX1B_HUMAN | 35.054 % | 224 | 3.87E-67 |
| LHX1_HUMAN | 32.872 % | 152 | 2.28E-40 |