- EST 'FF727063.1' >
- Region 'REG00000561' >
- Transcript 'KH2012:KH.C9.64.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C9.64.v1.A.nonSL8-1
Possible name(s)
NHP2; RPL7A; SNU13
Gene model
Location
KhC9 [4,899,369 / 4,903,135]
Amino acid sequence
Length: 130
>KH.C9.64.v1.A.nonSL8-1
IKNMDDEVNSKAYPLADAELTKTILDMIQQASNYKQLRKGANEATKTLNRGLSELIVLSA
DAEPLEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIAASVTSCEGSQLKSQIDS
LRGRIEKLLV
Nucleotide sequence
Length: 2,736
>KH2012:KH.C9.64.v1.A.nonSL8-1
AATCTAATTTTACCGTATATTTAGGTCTAAATTTATTTAGGTCTTTGTTATTTATGTGAA
TTGAATATCGTGGTAACCTCAGTGAAGCTGTGATCCTTCCTATATTTCGGTGAGCAGAGA
GGAAAAGTTGAATCAAGAATATGGATGACGAAGTAAACAGCAAGGCTTACCCGCTGGCAG
ATGCTGAGTTGACGAAAACCATCCTTGACATGATACAGCAAGCTTCAAACTATAAACAAC
TGAGGAAAGGAGCTAATGAAGCAACCAAGACATTGAACCGTGGGTTGTCCGAACTCATCG
TGTTGTCTGCTGATGCCGAACCTTTGGAAATATTGCTACATCTGCCTCTCCTGTGTGAGG
ATAAAAATGTTCCGTACGTTTTTGTACGCTCCAAGCAAGCGCTGGGCAGAGCATGCGGGG
TATCGCGACCTGTGATAGCAGCTTCTGTGACATCATGCGAAGGTTCTCAGTTGAAATCGC
AAATAGATTCTCTTCGTGGAAGGATTGAAAAGTTGCTCGTTTAATCTTCACATTCTTTCT
TTGGCAACAAAATCTTAATTTTTTGGAAACACCATTCACTGCCGATTTAACGCATCGTGT
ACAATTGTATAATACAACAGAGCAGCAAAATTCATTCCCTTTGTCTTCTTTCATTCCATT
CTGCACTTCCTTTGGTGCCCTAAGCAAGACCGAACATATGGGTTTCTTAAACACAGAGGC
TGGCTGTAACCAGCCTTATATTCCTGGTTGTGTAACGCCTGATGAATTTGTCACTGCAGG
TGATGGAACGCCCTCATCTAGATCTAATTCCATATTTAATCAAATTATTTCAAACGTTTT
GATATTATAACAAACTGCCTTATAAGTAAAGCTGAATTCTTACCGTAAAGTCCAATAGCA
AGAAACAGCACCACAAAAAGAGTAACTGTGCATAGTATTGTTGGTATTGCTATCCACAGT
AGACTGCTAATCAGAGATTTTTTGCTGCAGTCTAGCAGATGATAGAAGCCAGGACACCTA
AGCAACATTTGTAGTTTTAAATCATGAAAAATTTATAGTTACAATTTACAAAGTTACCTG
CCCCAGCATTTATGTTTCTTCGATTTTTCTTCAGCTTTTGGTAATTCTGTTGCAGATAGA
GCTGCCTCACCTTTCTGTTTGTTGCGAACTTTTCTTCTTGCTTGTCTGGTTGATGTAGAA
GCCGCAAAGAACTGACAAGCAAAACTTTAGTAACATAATTTTTATTGACAACTAAACGAA
AAAAACATTATTGAAACAAATAAGAGAAGAGAATCAACAGCAAAACAACACTTGTTAAAA
CAGGTTATGGATAAAAAGTGTTGAAAAGACTTAAATGTGTAAAGCTGTTAAACAAAGATC
AAAGTTGGCAACATACCTTTTCTACTCTACGCCTCCATTCTGCTTCTGTATATCTACCCA
CACCTTGTGTGTCAACCATCGGGTAAATGTTCGGACCAAATGCAACTGACATGTTCTGGT
ATGCCATTGAACCAGGTGTCGGTCTACACAATCATAACATAAGAGAAGGAAATCAACATA
TGAATATAAAGCGTGGGCAAGAATGTTGATTAGTTTAGTTGAACAGTTCTACTTATTCTG
TGTCGGTAACATTGTGGAGTCACACTGGTTGCATGAATGATGTAAATTAACTTGGTGTTG
TGGTAATGATAGATTTAAGAAGGATATCAAGTATTCCTAATTTTTTCAAGGGATTTTATT
TACAAACCTGTTATGATTCCTATGGTGACGGGAAGTTGACCTAGAATGTGAATTTCTGTA
TTTTCCATGTTTTCTGTGACTTTCTCTTGACCTTAAAGAAGCTGCTTAATCAACTTATGC
TATATTTATGATAAATGCCCAAAACCTTATTTTACTTAAGATAATTCTTACCACAATCGG
TTTGGACTGCCCCGTTCATTCTCCAACGACAGTGAGGTATCTGGTCGAATAACTTCACCA
ACTCTGCTTTCAGGTCGCTCCATGTCAGGTTTCTGTGAATCTCGTGATCGAAGCAAATTA
CGTTCATGTCTAAAATGATCAGACAGCTGTCATTGTTTTACAGATACACTATAAGTCAAT
GCTTCTACAGTACTTATTAAGGTGGATGACACTCAACAGCTAAAATACTAAGAGTAAAGC
AGGAAATTTATAGTAAGGTACCAGCCATGATGTGTCTATCTAACACCCTTTAGAATTTAA
CATTCTGCCTATGTTGGTCCACTTGGTTCTATACAGCCCGCTGCTCATGCATTGCCGGCC
AGTTATTTCTATCTGACTTACCTCATAGAGTCAAATAGAGGCATCGGTCTTTCATCATAA
CCTCGCATTTGGTATGGTGGGTTCTGGAGTTGAGGGTAATGATGTTCTGGTGTAAGATGT
AAACTTGATCTTGTCGTGACTCTGGATGTTCCAGATTCAATGCGTCCACGTTTTGTGCCG
CGTGATTTTGATTCTCTTCTTGGTGTCTCACTAAAAAGGTGTATTTATAATATAGCACGG
GTATTATACCAATCGCTTTACTAGACACAAATTATACAAAAAAAAATCTTTTTCATTTTT
CAGGACAGGTTTCGGAAAATGGGTTTACTCTGACTTGAATCTCTGGTCCCATGACATGCC
TAACTGTAGAACCTCACCTATATAGAATAGAATTCTATGTTAAGCTTGCATTCATCCAGT
TGCAAAAAGACTTAACTTTGAAAATTTAATTGAAAA
| Gene3D |
L30e-like (IPR029064) - T[2-130] 3.5E-50 |
| SUPERFAMILY |
L30e-like (IPR029064) - T[7-128] 1.3E-34 |
| PRINTS |
H/ACA_rnp_Nhp2_euk (IPR002415) - T[10-23] 7.4E-26 - T[23-38] 7.4E-26 - T[40-50] 7.4E-26 - T[84-96] 7.4E-26 |
| Pfam |
Ribosomal_L7Ae/L30e/S12e/Gad45 (IPR004038) - T[24-113] 1.2E-25 |
| PRINTS |
Ribosomal_L7Ae/L8/Nhp2 (IPR018492) - T[37-51] 1.8E-20 - T[56-69] 1.8E-20 - T[72-82] 1.8E-20 - T[82-96] 1.8E-20 |
| ProSitePatterns |
Ribosomal_L7Ae_CS (IPR004037) - T[75-92] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NHP2_HUMAN | 40.952 % | 89.7 | 6.17E-24 |
| NH2L1_HUMAN | 80.645 % | 197 | 1.05E-66 |