- Transcript 'KH2012:KH.C9.72.v1.A...' >
- Transcript 'KH2012:KH.C9.72.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C9.72.v1.A.nonSL4-1
Possible name(s)
CDH11; CDH12; CDH4
Gene model
Location
KhC9 [920,336 / 932,301]
Amino acid sequence
Length: 800
>KH.C9.72.v1.A.nonSL4-1
RGVGSAITLVIVISLQIILPSEGKFFNKLINQAKRNRVKRSWSYPVISIPETTDRDPPFV
RKNILDITNDNPNVKTYELQNEDPTKFAIEFSAVDPSAGASIWQLVGLDRDVPGGDKYIF
YAVVRDAAGNELDRVTLEVVVTDRNDNKPIFDISTLQGSVQEGVSPGTPVMTVVANDADD
PKSLDQNGKVNYVLGPEEEVPPAPGGRRRFAISPTGVITVVGDLDIETAPTVNVVIIAKD
GFIGASSGWSASATATIQIQDANDNKPVFQNTPYNAKQGELLPLRSTVFTVSATDADIDL
ENKGVTFEIVAGNDDNTFIVQSYPRGAGASTGDIILNKNLDYENGPKQYTLLVKAFNAQA
SNSGVQQFQATETVIVNVLDENEPPVFINQPYAGNIVENDVPKPNIAFVRAQDYDFGGNQ
TVTYGMVSTEGWFTIAADGAISSVGPVDREHPSVNQTNSVYTLVVSAIDNYRVKATATAN
VAITIGDKNDNAPEPDGPWTVTICEKPPTPFVTNIKIKDLDEPQNGAPFSVSLNDNSGLW
VVGISALISGDPMSRSINTLTKSFDVAQQSKYEVPIIMSDGATPPEPKLTSTNTLVINIC
RCNDNGEFNCEKMVPVAGAGFPVAVLIAIIAAILILLIIVLAVVAYRRRQQAGLEKEVLL
DDDDVRENLQAYHDEGGGEEDNDGYDISALQAQPPNTGKPKVVDVQPLGGAQPEIRRPIQ
PDTDIGNYIGDAKQQADNDPTAPPFDSLLVFDYEGQGSDAGSLSSLNSGTTDASQDYDYL
NNWGPRFKKLADMYGGGESD
Nucleotide sequence
Length: 3,073
>KH2012:KH.C9.72.v1.A.nonSL4-1
TGAGGGGAGTTGGTTCTGCAATAACACTGGTTATTGTGATCTCATTGCAGATCATACTAC
CAAGTGAAGGGAAGTTTTTTAACAAACTGATTAATCAAGCCAAACGTAACAGAGTCAAGA
GGTCATGGAGTTACCCGGTCATTTCAATTCCTGAAACTACAGATCGCGATCCACCATTTG
TTAGAAAGAATATACTAGATATCACAAATGACAATCCAAATGTGAAAACTTACGAACTGC
AAAACGAGGATCCAACTAAATTCGCAATAGAGTTTAGTGCAGTGGATCCAAGTGCTGGAG
CTTCTATATGGCAGTTGGTAGGGTTAGATCGTGACGTGCCAGGCGGGGATAAATATATCT
TCTATGCTGTTGTTCGAGACGCAGCTGGAAATGAGTTGGATCGAGTAACGTTAGAAGTTG
TGGTTACTGACAGGAATGATAACAAACCAATCTTTGATATATCTACTTTACAAGGAAGTG
TACAAGAAGGTGTTTCACCTGGTACCCCTGTGATGACGGTGGTGGCAAACGATGCCGATG
ACCCGAAATCTCTTGATCAGAATGGAAAGGTCAATTATGTTCTTGGACCTGAAGAAGAAG
TACCACCAGCACCTGGAGGTCGTCGCCGTTTTGCAATTTCCCCCACTGGAGTTATCACAG
TGGTTGGAGATCTTGACATTGAAACTGCCCCAACAGTTAATGTGGTGATCATTGCAAAAG
ATGGATTCATAGGCGCATCGAGTGGTTGGTCTGCTTCAGCTACTGCTACCATCCAAATAC
AAGATGCAAACGATAATAAGCCTGTGTTTCAAAACACCCCTTATAATGCAAAGCAAGGAG
AATTATTACCTCTGAGATCAACTGTGTTTACTGTGTCTGCCACGGATGCGGATATTGACT
TGGAAAACAAAGGGGTCACGTTCGAAATTGTAGCAGGCAATGACGACAACACCTTTATTG
TCCAAAGTTATCCTCGTGGGGCCGGGGCAAGTACTGGGGACATTATCCTTAACAAAAATT
TGGATTATGAGAATGGACCAAAACAATACACTCTTCTTGTTAAAGCATTTAATGCACAAG
CTTCGAACAGTGGTGTACAACAGTTTCAGGCCACAGAAACGGTTATTGTCAATGTATTAG
ATGAAAACGAACCCCCGGTGTTTATAAACCAGCCTTATGCTGGTAACATTGTTGAGAATG
ATGTTCCGAAACCCAACATTGCGTTTGTTCGAGCCCAGGATTATGATTTTGGTGGAAACC
AAACAGTAACGTATGGCATGGTCAGCACTGAGGGTTGGTTCACCATTGCAGCAGATGGTG
CTATTAGTTCTGTGGGCCCAGTTGACCGGGAACATCCATCTGTCAATCAAACTAACAGCG
TATACACCCTGGTTGTAAGCGCAATTGATAATTATCGAGTCAAAGCAACAGCAACCGCCA
ATGTAGCAATTACAATTGGAGATAAAAACGACAACGCACCTGAACCAGATGGTCCATGGA
CAGTCACAATATGTGAGAAACCTCCCACCCCATTTGTTACCAATATCAAGATAAAGGATT
TAGATGAGCCCCAAAATGGAGCCCCGTTCTCTGTTTCGCTAAACGACAACTCCGGACTCT
GGGTCGTTGGAATCTCGGCGCTAATATCTGGCGATCCTATGTCACGTTCCATTAACACAC
TCACTAAGAGCTTTGACGTTGCCCAACAATCTAAGTACGAGGTCCCAATCATCATGTCCG
ATGGTGCAACACCACCAGAACCAAAGCTAACAAGCACCAATACATTAGTTATCAACATAT
GCCGTTGCAATGACAACGGTGAATTTAACTGCGAGAAAATGGTCCCCGTCGCCGGGGCAG
GGTTCCCTGTTGCCGTTCTTATAGCTATTATTGCTGCTATACTTATCCTACTAATCATCG
TACTTGCGGTGGTTGCATACCGACGACGACAACAAGCTGGTTTGGAGAAGGAAGTTTTAT
TGGACGACGATGACGTTCGTGAAAACTTACAAGCTTATCATGATGAGGGTGGCGGCGAAG
AGGACAATGATGGTTACGACATCAGTGCACTACAAGCACAACCTCCAAACACTGGAAAAC
CAAAGGTAGTTGACGTACAACCATTAGGTGGCGCACAGCCTGAGATACGACGACCGATAC
AACCAGATACTGATATCGGAAACTACATTGGAGATGCGAAGCAGCAAGCCGACAACGACC
CCACAGCGCCACCTTTTGACTCGTTGCTTGTATTTGACTACGAAGGTCAAGGGTCAGATG
CGGGGTCATTGAGTTCTTTGAACTCTGGCACAACAGACGCATCCCAGGATTACGATTACC
TCAACAACTGGGGTCCTCGGTTCAAGAAACTTGCCGATATGTACGGAGGTGGTGAGAGCG
ATTAAACACTAGGTGGATTGTGATTGGACACTAGAGGCAGAGGAGAGAGGATATTATTAT
TTCGTTTCTGACGAAAAACGCGAAATTTATTTTTTAAGCATTCCGAGAATAGTAGACTTT
TTTAAGAGCTGATTTACAGTGTTTCCAGCTATTTTAAGGAAACAACCACCGCTTTTAAAT
GTGCACCACTGTCCTGTGGGCTTATGCTGTATATATAGCATTTTATGACAATCTTGTGTT
GGTGCTGATGTGTATATTATGTCTAACTAATGGTTTCATATTTATCGGGAAATAATTTTA
TGCATATATTGAAAATAATGATTTATCATCAAATTCTTGTCTTCTGTAATTGTTTGTTTT
CTTGCTACTTATAAAGTACTTGTGTGTGTTTTTTATGTAGTGCTTTTTACCGTAATTGAA
ACACTGGAAGGCCAACTCTTATGGAGTCGATACATTAATGAATTATTTTAGCATCGTTAC
TTTTGTATATACCCACATAATGTAGTATGACGTCACACTGCTGCCAGATACGTCACAATT
ACGTTGTAGATTATTTAAAAATGAACTTTATAAACTGTAAGCGAAAAACTTGGTGCCTTT
TATAGGTTTTACCTTTTTAAAGAAAGTTTTTATAAAATTGTGGAATTTGGAATACAAAAA
GCTCTGTTTAAAA
| SMART |
Cadherin (IPR002126) - T[60-149] 0.03 - T[173-267] 3.0E-12 - T[291-386] 1.5E-10 - T[409-493] 2.7E-15 - T[515-607] 6.2E-6 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[145-261] 3.8E-17 - T[263-380] 3.0E-16 - T[376-496] 9.42E-20 - T[489-600] 1.11E-10 |
| PRINTS |
Cadherin (IPR002126) - T[151-180] 6.6E-19 - T[248-267] 6.6E-19 - T[385-398] 6.6E-19 - T[477-494] 6.6E-19 |
| Pfam |
Cadherin (IPR002126) - T[158-260] 3.6E-12 - T[274-379] 8.1E-11 - T[392-485] 1.4E-11 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[257-267] . - T[483-493] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[657-796] 1.3E-47 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[704-800] 1.3E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 36.502 % | 323 | 1.8E-97 |
| CAD12_HUMAN | 32.409 % | 297 | 6.97E-89 |
| CAD11_HUMAN | 34.527 % | 309 | 2.71E-93 |