- Transcript 'KH2012:KH.C9.72.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C9.72.v1.A.SL2-1
Possible name(s)
CDH11; CDH12; CDH4
Gene model
Location
KhC9 [920,301 / 932,301]
Amino acid sequence
Length: 807
>KH.C9.72.v1.A.SL2-1
IGVVEIMRGVGSAITLVIVISLQIILPSEGKFFNKLINQAKRNRVKRSWSYPVISIPETT
DRDPPFVRKNILDITNDNPNVKTYELQNEDPTKFAIEFSAVDPSAGASIWQLVGLDRDVP
GGDKYIFYAVVRDAAGNELDRVTLEVVVTDRNDNKPIFDISTLQGSVQEGVSPGTPVMTV
VANDADDPKSLDQNGKVNYVLGPEEEVPPAPGGRRRFAISPTGVITVVGDLDIETAPTVN
VVIIAKDGFIGASSGWSASATATIQIQDANDNKPVFQNTPYNAKQGELLPLRSTVFTVSA
TDADIDLENKGVTFEIVAGNDDNTFIVQSYPRGAGASTGDIILNKNLDYENGPKQYTLLV
KAFNAQASNSGVQQFQATETVIVNVLDENEPPVFINQPYAGNIVENDVPKPNIAFVRAQD
YDFGGNQTVTYGMVSTEGWFTIAADGAISSVGPVDREHPSVNQTNSVYTLVVSAIDNYRV
KATATANVAITIGDKNDNAPEPDGPWTVTICEKPPTPFVTNIKIKDLDEPQNGAPFSVSL
NDNSGLWVVGISALISGDPMSRSINTLTKSFDVAQQSKYEVPIIMSDGATPPEPKLTSTN
TLVINICRCNDNGEFNCEKMVPVAGAGFPVAVLIAIIAAILILLIIVLAVVAYRRRQQAG
LEKEVLLDDDDVRENLQAYHDEGGGEEDNDGYDISALQAQPPNTGKPKVVDVQPLGGAQP
EIRRPIQPDTDIGNYIGDAKQQADNDPTAPPFDSLLVFDYEGQGSDAGSLSSLNSGTTDA
SQDYDYLNNWGPRFKKLADMYGGGESD
Nucleotide sequence
Length: 3,108
>KH2012:KH.C9.72.v1.A.SL2-1
AGCTGGGAATAACTAAATAGGAGTAGTGGAAATAATGAGGGGAGTTGGTTCTGCAATAAC
ACTGGTTATTGTGATCTCATTGCAGATCATACTACCAAGTGAAGGGAAGTTTTTTAACAA
ACTGATTAATCAAGCCAAACGTAACAGAGTCAAGAGGTCATGGAGTTACCCGGTCATTTC
AATTCCTGAAACTACAGATCGCGATCCACCATTTGTTAGAAAGAATATACTAGATATCAC
AAATGACAATCCAAATGTGAAAACTTACGAACTGCAAAACGAGGATCCAACTAAATTCGC
AATAGAGTTTAGTGCAGTGGATCCAAGTGCTGGAGCTTCTATATGGCAGTTGGTAGGGTT
AGATCGTGACGTGCCAGGCGGGGATAAATATATCTTCTATGCTGTTGTTCGAGACGCAGC
TGGAAATGAGTTGGATCGAGTAACGTTAGAAGTTGTGGTTACTGACAGGAATGATAACAA
ACCAATCTTTGATATATCTACTTTACAAGGAAGTGTACAAGAAGGTGTTTCACCTGGTAC
CCCTGTGATGACGGTGGTGGCAAACGATGCCGATGACCCGAAATCTCTTGATCAGAATGG
AAAGGTCAATTATGTTCTTGGACCTGAAGAAGAAGTACCACCAGCACCTGGAGGTCGTCG
CCGTTTTGCAATTTCCCCCACTGGAGTTATCACAGTGGTTGGAGATCTTGACATTGAAAC
TGCCCCAACAGTTAATGTGGTGATCATTGCAAAAGATGGATTCATAGGCGCATCGAGTGG
TTGGTCTGCTTCAGCTACTGCTACCATCCAAATACAAGATGCAAACGATAATAAGCCTGT
GTTTCAAAACACCCCTTATAATGCAAAGCAAGGAGAATTATTACCTCTGAGATCAACTGT
GTTTACTGTGTCTGCCACGGATGCGGATATTGACTTGGAAAACAAAGGGGTCACGTTCGA
AATTGTAGCAGGCAATGACGACAACACCTTTATTGTCCAAAGTTATCCTCGTGGGGCCGG
GGCAAGTACTGGGGACATTATCCTTAACAAAAATTTGGATTATGAGAATGGACCAAAACA
ATACACTCTTCTTGTTAAAGCATTTAATGCACAAGCTTCGAACAGTGGTGTACAACAGTT
TCAGGCCACAGAAACGGTTATTGTCAATGTATTAGATGAAAACGAACCCCCGGTGTTTAT
AAACCAGCCTTATGCTGGTAACATTGTTGAGAATGATGTTCCGAAACCCAACATTGCGTT
TGTTCGAGCCCAGGATTATGATTTTGGTGGAAACCAAACAGTAACGTATGGCATGGTCAG
CACTGAGGGTTGGTTCACCATTGCAGCAGATGGTGCTATTAGTTCTGTGGGCCCAGTTGA
CCGGGAACATCCATCTGTCAATCAAACTAACAGCGTATACACCCTGGTTGTAAGCGCAAT
TGATAATTATCGAGTCAAAGCAACAGCAACCGCCAATGTAGCAATTACAATTGGAGATAA
AAACGACAACGCACCTGAACCAGATGGTCCATGGACAGTCACAATATGTGAGAAACCTCC
CACCCCATTTGTTACCAATATCAAGATAAAGGATTTAGATGAGCCCCAAAATGGAGCCCC
GTTCTCTGTTTCGCTAAACGACAACTCCGGACTCTGGGTCGTTGGAATCTCGGCGCTAAT
ATCTGGCGATCCTATGTCACGTTCCATTAACACACTCACTAAGAGCTTTGACGTTGCCCA
ACAATCTAAGTACGAGGTCCCAATCATCATGTCCGATGGTGCAACACCACCAGAACCAAA
GCTAACAAGCACCAATACATTAGTTATCAACATATGCCGTTGCAATGACAACGGTGAATT
TAACTGCGAGAAAATGGTCCCCGTCGCCGGGGCAGGGTTCCCTGTTGCCGTTCTTATAGC
TATTATTGCTGCTATACTTATCCTACTAATCATCGTACTTGCGGTGGTTGCATACCGACG
ACGACAACAAGCTGGTTTGGAGAAGGAAGTTTTATTGGACGACGATGACGTTCGTGAAAA
CTTACAAGCTTATCATGATGAGGGTGGCGGCGAAGAGGACAATGATGGTTACGACATCAG
TGCACTACAAGCACAACCTCCAAACACTGGAAAACCAAAGGTAGTTGACGTACAACCATT
AGGTGGCGCACAGCCTGAGATACGACGACCGATACAACCAGATACTGATATCGGAAACTA
CATTGGAGATGCGAAGCAGCAAGCCGACAACGACCCCACAGCGCCACCTTTTGACTCGTT
GCTTGTATTTGACTACGAAGGTCAAGGGTCAGATGCGGGGTCATTGAGTTCTTTGAACTC
TGGCACAACAGACGCATCCCAGGATTACGATTACCTCAACAACTGGGGTCCTCGGTTCAA
GAAACTTGCCGATATGTACGGAGGTGGTGAGAGCGATTAAACACTAGGTGGATTGTGATT
GGACACTAGAGGCAGAGGAGAGAGGATATTATTATTTCGTTTCTGACGAAAAACGCGAAA
TTTATTTTTTAAGCATTCCGAGAATAGTAGACTTTTTTAAGAGCTGATTTACAGTGTTTC
CAGCTATTTTAAGGAAACAACCACCGCTTTTAAATGTGCACCACTGTCCTGTGGGCTTAT
GCTGTATATATAGCATTTTATGACAATCTTGTGTTGGTGCTGATGTGTATATTATGTCTA
ACTAATGGTTTCATATTTATCGGGAAATAATTTTATGCATATATTGAAAATAATGATTTA
TCATCAAATTCTTGTCTTCTGTAATTGTTTGTTTTCTTGCTACTTATAAAGTACTTGTGT
GTGTTTTTTATGTAGTGCTTTTTACCGTAATTGAAACACTGGAAGGCCAACTCTTATGGA
GTCGATACATTAATGAATTATTTTAGCATCGTTACTTTTGTATATACCCACATAATGTAG
TATGACGTCACACTGCTGCCAGATACGTCACAATTACGTTGTAGATTATTTAAAAATGAA
CTTTATAAACTGTAAGCGAAAAACTTGGTGCCTTTTATAGGTTTTACCTTTTTAAAGAAA
GTTTTTATAAAATTGTGGAATTTGGAATACAAAAAGCTCTGTTTAAAA
| SMART |
Cadherin (IPR002126) - T[67-156] 0.03 - T[180-274] 3.0E-12 - T[298-393] 1.5E-10 - T[416-500] 2.7E-15 - T[522-614] 6.2E-6 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[152-268] 4.28E-17 - T[270-387] 3.0E-16 - T[383-503] 9.57E-20 - T[496-607] 1.23E-10 |
| PRINTS |
Cadherin (IPR002126) - T[158-187] 6.8E-19 - T[255-274] 6.8E-19 - T[392-405] 6.8E-19 - T[484-501] 6.8E-19 |
| Pfam |
Cadherin (IPR002126) - T[165-267] 3.6E-12 - T[281-386] 8.2E-11 - T[399-492] 1.4E-11 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[264-274] . - T[490-500] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[664-803] 1.3E-47 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[711-807] 1.3E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 36.502 % | 323 | 1.55E-97 |
| CAD12_HUMAN | 32.409 % | 297 | 6.86E-89 |
| CAD11_HUMAN | 34.527 % | 308 | 4.72E-93 |