- Transcript 'KH2012:KH.C9.785.v1....'
Transcript Model
Transcript Id
KH2012:KH.C9.785.v1.A.ND2-1
Possible name(s)
DES; GFAP; VIM
Gene model
Location
KhC9 [401,641 / 410,292]
Amino acid sequence
Length: 484
>KH.C9.785.v1.A.ND2-1
QDNLKMAQRSSRKTTEERSSSYKRHFGEGPARFTYSSKSSPGRSQSATRSYRYSSSSGGG
GGAAMAGGAMGGGMGMGAGMGMGGGMGASMGGERIRMTRAAPVSSGISMRDINLMSDALG
PDFERMRINEKEELQVLNTRFAGYIQKVRALEQANKILEVQLEQLSAQQPGRVADMYEDE
LARLRREVDQITKEKANILMQLENAALEANNWKDKYEEEAISKRELEDDLNSMRKDCDDA
TLVRLDLERRLETLQEEIEFLKRTHDQEVAELMEQVRKTEVKIEMAPGPDLEELVEDMRK
QYEKLASKNRADAEEWYTEKVSTLQDQAVKNDDLVRNVRSELSEYRKSVQTLNMEIDSLR
GTNDSLQRAMGELEERYNRDTSDYQDTIMNLQAECDDLKTQMAQHLRQYQELMDVKMALD
IEIATYRKLLEGEESRLAERLRTSGGGSSRFVTTTSRSGKIKITIQEDFHPAEEEQVTSW
EVMT
Nucleotide sequence
Length: 2,029
>KH2012:KH.C9.785.v1.A.ND2-1
AAGACCACAAGCCTTATAAAAGCAACAGGGCTGTCTAAGTTAAGTATTCCTGGTTGGTGA
AGTTATAACAAGATAACCTCAAGATGGCGCAAAGGAGCAGCAGAAAAACGACAGAAGAAC
GTAGCTCAAGCTACAAACGACACTTTGGTGAAGGCCCGGCCAGATTCACTTATTCAAGCA
AGTCATCTCCCGGCCGATCCCAGTCCGCAACACGATCGTACAGGTACTCAAGCAGCAGCG
GTGGCGGTGGCGGAGCTGCTATGGCCGGTGGTGCCATGGGCGGCGGTATGGGCATGGGTG
CTGGCATGGGCATGGGAGGAGGCATGGGCGCTTCTATGGGTGGCGAAAGGATCAGAATGA
CCCGAGCAGCACCAGTGAGCAGTGGAATCTCAATGCGAGACATCAACTTAATGTCGGATG
CTCTGGGACCAGATTTCGAGAGGATGAGGATCAACGAAAAAGAAGAACTCCAAGTCCTTA
ATACCAGATTCGCTGGTTACATCCAAAAGGTTCGAGCACTTGAACAAGCCAACAAGATCT
TGGAAGTTCAACTTGAACAACTAAGCGCCCAACAACCCGGTCGTGTTGCTGATATGTACG
AAGATGAATTGGCAAGACTCCGTCGAGAAGTCGACCAGATCACCAAGGAAAAGGCGAACA
TCCTGATGCAGTTGGAAAACGCAGCATTGGAAGCAAACAATTGGAAAGACAAATACGAAG
AAGAAGCAATCAGCAAACGAGAACTCGAAGACGATCTCAACTCCATGCGAAAAGATTGCG
ATGACGCAACTTTGGTTCGTCTTGACCTTGAACGCAGACTGGAAACACTGCAAGAAGAAA
TTGAGTTCCTTAAGAGAACTCATGACCAGGAAGTTGCTGAGCTCATGGAACAAGTCAGGA
AGACGGAGGTAAAGATCGAGATGGCTCCCGGACCTGATCTGGAGGAACTCGTTGAAGACA
TGAGGAAACAATACGAGAAACTCGCATCCAAGAACCGAGCTGATGCTGAGGAATGGTACA
CTGAGAAGGTATCCACCCTCCAAGACCAAGCCGTCAAGAACGACGACCTAGTACGTAACG
TTCGAAGTGAATTGAGCGAATACAGGAAGAGCGTCCAGACCTTGAATATGGAGATTGACT
CATTGAGAGGAACAAACGACTCCCTTCAACGAGCAATGGGAGAACTTGAAGAGAGGTACA
ACAGAGATACCTCCGACTACCAAGACACCATTATGAACTTACAGGCTGAATGCGACGACC
TGAAGACACAGATGGCACAACATCTCCGTCAATACCAAGAACTCATGGACGTCAAGATGG
CTTTGGACATCGAGATCGCTACTTACAGGAAGCTGTTGGAAGGAGAGGAATCAAGGCTTG
CTGAACGCCTACGAACCTCGGGCGGCGGTAGCTCCCGTTTCGTCACAACCACATCAAGAT
CAGGTAAGATTAAAATAACCATCCAGGAGGATTTTCATCCGGCCGAGGAGGAGCAAGTGA
CGTCATGGGAAGTGATGACGTAGAAACCGTCACAACAAAAAAAGTTGTTGTCAAGACAAT
TGAAACAAAGGACGGAAAGGTCGTGAGCCAAACCGAGGACGTTCGTGAGCAATCATCTGG
TGATCATGATGACAACGCTCACGCCACCTTGTGAGCAACAATGGCTGTTATTTAAAAAAG
TTTATAATCGTTACGTAATCAATTCAATTAAAAAAAGTTTATAATCCCCAGTTATTACGT
AATAAAGCCGTTTGTTTGGATTTCGCGTGTACCAAGTATGACGTAATCGCTTTGTTTGTG
ACGTTGTGACGTGTGATCTAACAGATCTGTATTGTTGACAAAGGTTGCTGCTGTGACGTA
ATGTGTGACGTCAAATACATGGAAGCTTGGTTTATGAGATAATAGGTGTGGTTTGTGACG
TAACAATGGTATAGAGATGACATTACTATCGTACATAACGTCATAATGCGAATGTACACG
TAATAAACGGAATGTTTATTCGTCATAATAAACTTTGTTTGTTCAATAA
| PANTHER |
IF (IPR001664) - T[57-458] 9.8E-151 |
| SMART |
IF (IPR001664) - T[129-436] 7.9E-138 |
| Pfam |
IF (IPR001664) - T[129-436] 1.5E-100 |
| PRINTS |
Keratin_I (IPR002957) - T[205-218] 3.5E-17 - T[226-249] 3.5E-17 - T[279-299] 3.5E-17 - T[351-366] 3.5E-17 - T[377-403] 3.5E-17 |
| ProSitePatterns |
Intermediate_filament_CS (IPR018039) - T[423-431] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VIME_HUMAN | 43.645 % | 327 | 2.12E-107 |
| GFAP_HUMAN | 39.855 % | 294 | 3.49E-95 |
| DESM_HUMAN | 40.87 % | 278 | 1.43E-88 |