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  1. Transcript 'KH2012:KH.C9.785.v1....'

Transcript Model

Transcript Id

KH2012:KH.C9.785.v1.A.ND2-1

Possible name(s)

DES; GFAP; VIM

Location

KhC9 [401,641 / 410,292]

Sequences

Amino acid sequence

Length: 484

>KH.C9.785.v1.A.ND2-1
QDNLKMAQRSSRKTTEERSSSYKRHFGEGPARFTYSSKSSPGRSQSATRSYRYSSSSGGG
GGAAMAGGAMGGGMGMGAGMGMGGGMGASMGGERIRMTRAAPVSSGISMRDINLMSDALG
PDFERMRINEKEELQVLNTRFAGYIQKVRALEQANKILEVQLEQLSAQQPGRVADMYEDE
LARLRREVDQITKEKANILMQLENAALEANNWKDKYEEEAISKRELEDDLNSMRKDCDDA
TLVRLDLERRLETLQEEIEFLKRTHDQEVAELMEQVRKTEVKIEMAPGPDLEELVEDMRK
QYEKLASKNRADAEEWYTEKVSTLQDQAVKNDDLVRNVRSELSEYRKSVQTLNMEIDSLR
GTNDSLQRAMGELEERYNRDTSDYQDTIMNLQAECDDLKTQMAQHLRQYQELMDVKMALD
IEIATYRKLLEGEESRLAERLRTSGGGSSRFVTTTSRSGKIKITIQEDFHPAEEEQVTSW
EVMT

Nucleotide sequence

Length: 2,029

>KH2012:KH.C9.785.v1.A.ND2-1
AAGACCACAAGCCTTATAAAAGCAACAGGGCTGTCTAAGTTAAGTATTCCTGGTTGGTGA
AGTTATAACAAGATAACCTCAAGATGGCGCAAAGGAGCAGCAGAAAAACGACAGAAGAAC
GTAGCTCAAGCTACAAACGACACTTTGGTGAAGGCCCGGCCAGATTCACTTATTCAAGCA
AGTCATCTCCCGGCCGATCCCAGTCCGCAACACGATCGTACAGGTACTCAAGCAGCAGCG
GTGGCGGTGGCGGAGCTGCTATGGCCGGTGGTGCCATGGGCGGCGGTATGGGCATGGGTG
CTGGCATGGGCATGGGAGGAGGCATGGGCGCTTCTATGGGTGGCGAAAGGATCAGAATGA
CCCGAGCAGCACCAGTGAGCAGTGGAATCTCAATGCGAGACATCAACTTAATGTCGGATG
CTCTGGGACCAGATTTCGAGAGGATGAGGATCAACGAAAAAGAAGAACTCCAAGTCCTTA
ATACCAGATTCGCTGGTTACATCCAAAAGGTTCGAGCACTTGAACAAGCCAACAAGATCT
TGGAAGTTCAACTTGAACAACTAAGCGCCCAACAACCCGGTCGTGTTGCTGATATGTACG
AAGATGAATTGGCAAGACTCCGTCGAGAAGTCGACCAGATCACCAAGGAAAAGGCGAACA
TCCTGATGCAGTTGGAAAACGCAGCATTGGAAGCAAACAATTGGAAAGACAAATACGAAG
AAGAAGCAATCAGCAAACGAGAACTCGAAGACGATCTCAACTCCATGCGAAAAGATTGCG
ATGACGCAACTTTGGTTCGTCTTGACCTTGAACGCAGACTGGAAACACTGCAAGAAGAAA
TTGAGTTCCTTAAGAGAACTCATGACCAGGAAGTTGCTGAGCTCATGGAACAAGTCAGGA
AGACGGAGGTAAAGATCGAGATGGCTCCCGGACCTGATCTGGAGGAACTCGTTGAAGACA
TGAGGAAACAATACGAGAAACTCGCATCCAAGAACCGAGCTGATGCTGAGGAATGGTACA
CTGAGAAGGTATCCACCCTCCAAGACCAAGCCGTCAAGAACGACGACCTAGTACGTAACG
TTCGAAGTGAATTGAGCGAATACAGGAAGAGCGTCCAGACCTTGAATATGGAGATTGACT
CATTGAGAGGAACAAACGACTCCCTTCAACGAGCAATGGGAGAACTTGAAGAGAGGTACA
ACAGAGATACCTCCGACTACCAAGACACCATTATGAACTTACAGGCTGAATGCGACGACC
TGAAGACACAGATGGCACAACATCTCCGTCAATACCAAGAACTCATGGACGTCAAGATGG
CTTTGGACATCGAGATCGCTACTTACAGGAAGCTGTTGGAAGGAGAGGAATCAAGGCTTG
CTGAACGCCTACGAACCTCGGGCGGCGGTAGCTCCCGTTTCGTCACAACCACATCAAGAT
CAGGTAAGATTAAAATAACCATCCAGGAGGATTTTCATCCGGCCGAGGAGGAGCAAGTGA
CGTCATGGGAAGTGATGACGTAGAAACCGTCACAACAAAAAAAGTTGTTGTCAAGACAAT
TGAAACAAAGGACGGAAAGGTCGTGAGCCAAACCGAGGACGTTCGTGAGCAATCATCTGG
TGATCATGATGACAACGCTCACGCCACCTTGTGAGCAACAATGGCTGTTATTTAAAAAAG
TTTATAATCGTTACGTAATCAATTCAATTAAAAAAAGTTTATAATCCCCAGTTATTACGT
AATAAAGCCGTTTGTTTGGATTTCGCGTGTACCAAGTATGACGTAATCGCTTTGTTTGTG
ACGTTGTGACGTGTGATCTAACAGATCTGTATTGTTGACAAAGGTTGCTGCTGTGACGTA
ATGTGTGACGTCAAATACATGGAAGCTTGGTTTATGAGATAATAGGTGTGGTTTGTGACG
TAACAATGGTATAGAGATGACATTACTATCGTACATAACGTCATAATGCGAATGTACACG
TAATAAACGGAATGTTTATTCGTCATAATAAACTTTGTTTGTTCAATAA

InterProScan

PANTHER
IF (IPR001664) - T[57-458] 9.8E-151
SMART
IF (IPR001664) - T[129-436] 7.9E-138
Pfam
IF (IPR001664) - T[129-436] 1.5E-100
PRINTS
Keratin_I (IPR002957) - T[205-218] 3.5E-17 - T[226-249] 3.5E-17 - T[279-299] 3.5E-17 - T[351-366] 3.5E-17 - T[377-403] 3.5E-17
ProSitePatterns
Intermediate_filament_CS (IPR018039) - T[423-431] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VIME_HUMAN 43.645 % 327 2.12E-107
GFAP_HUMAN 39.855 % 294 3.49E-95
DESM_HUMAN 40.87 % 278 1.43E-88