- Transcript 'KH2012:KH.C6.158.v2....' >
- Transcript 'KH2012:KH.C8.38.v6.A...' >
- Transcript 'Cisavi.CG.ENS81.R9.1...' >
- Region 'REG00001391' >
- Transcript 'KH2012:KH.L108.12.v1...'
Transcript Model
Transcript Id
KH2012:KH.L108.12.v1.A.nonSL3-1
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
KhL108 [138,644 / 148,870]
Amino acid sequence
Length: 690
>KH.L108.12.v1.A.nonSL3-1
NLKKNLKPPKKRTKKVQNRKTFVFDSLKWNVIRKKKTMNSSGSTNYPMASLYVGDLHLDV
TEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNYDPIKGRPI
RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENGSKGYGF
VHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKY
DEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGS
TDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATY
GTITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAH
LTAQYMQRMTSSMGVRMATPNQMIGQPFQAAAGASGYFMPFQGAQRTYMQSQIIRTTPRW
QHNPQGGFQMAGDMRSVGPRAPTTPAIRPMATQVGARGVIHPQHQMMHQQAMQQPAFKYT
QGVRNPAMAGYPQSGQPQAQQQADQSLQQAVHVQGQEPLTSSMLASAQPQEQKQMLGERL
YPLIEQSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVEEAVAVLQAHQVKVAQASR
RPANATPAAQAPAALPTEGPAPIAVGGAQE
Nucleotide sequence
Length: 2,529
>KH2012:KH.L108.12.v1.A.nonSL3-1
GTAGAACACCTCGTGCTAGTTTGTGTTTTAGGATAAAAATCCCAAAAACACACTTGTTAC
GCTATAAAACCTAAAAAAAAATTTAAAACCGCCTAAAAAACGTACAAAAAAAGTACAAAA
TCGCAAAACCTTTGTATTCGATTCTTTGAAGTGGAACGTAATACGAAAAAAGAAAACAAT
GAACAGCTCGGGCTCAACTAATTATCCGATGGCATCTTTGTACGTTGGTGATCTTCACCT
CGATGTTACGGAAGCTATGCTTTATGAAAAGTTCTCCCAAGCTGGTCCTGTCCTCTCAAT
CAGGGTGTGCAGGGACGTCATCACCCGTCGTTCGCTCGGATACGCCTATGTCAACTTTCA
ACAGCCAGCTGATGCTGAACGAGCCTTGGACACAATGAATTATGACCCCATCAAAGGTCG
TCCCATTCGTATCATGTGGAGCCAACGTGACCCATCTCTTCGTAAATCTGGTGTCGGAAA
CATCTTTATCAAGAACTTGGATAAATCTATTGACAACAAAGCTTTGTATGATACTTTCTC
TGCTTTTGGAAACATTCTGTCTTGCAAGGTGTCTTGTAATGAAAATGGTTCAAAAGGTTA
CGGGTTCGTCCATTTTGAAACTGAGGAGGCCGGAATAAGAGCTATTGAGAAGGTGAATGG
AATGTTGTTGAATGACAAGAAAGTGTTCGTTGGAAAGTTTTTGACAAGATCTGAACGCAT
CAAGAAGATGGGTGAACGGGTTCGTCAGTTCACCAACGTTTACATCAAAAACTTCGGTGA
CAAATACGATGAAAAGACGCTCCAAGTCATGTTTGAGAAATACGGCGTTGTGAAGAGCGT
TGCAGTCATGCGCGACCGAGATGGCAACTCCCGTGGTTTTGGATTCGTTGCGTACGACAG
TCATGAGGAAGCTCAAGCGGCCGTTGAAGCAATGAACGGGCAAGAGATTGAAGGAGCATC
AGGTTCCACCGATATCTTGTACGTCGGTCGTGCGCAGAAGAAGCAGGAGCGACAACAAGA
ACTACGTGGTCAATACGAGCAGCAGAAACAGGAACGCATTCAACGTTTCCAGGGTGTTAA
CCTCTACGTTAAGAACCTTGATGATAATGTCACCGATGATGAGCTCCGTGAAGCTTTCGC
TACTTATGGGACGATCACAAGCGCTAAGATCATGTCTGATGGTGAAAGATCCCGTGGGTT
TGGCTTCGTTTGTTTTAGTTCACCCGAAGAAGCCACGAAGGCCGTGACAGAGATGAATGG
AAGAATTGTGGGGACCAAACCTTTGTATGTTGCGCTTGCTCAACGCAGGGAGGATAGGAA
AGCACATCTAACAGCGCAATACATGCAACGAATGACGTCTAGCATGGGAGTTAGAATGGC
AACGCCAAACCAGATGATTGGCCAGCCCTTCCAAGCAGCAGCTGGCGCTTCAGGTTATTT
CATGCCATTCCAGGGAGCACAGAGGACTTACATGCAGAGTCAGATCATTAGAACGACACC
AAGATGGCAGCACAACCCACAAGGAGGCTTCCAGATGGCGGGTGACATGCGCTCTGTTGG
ACCCCGTGCACCCACAACCCCGGCTATTAGACCCATGGCCACCCAGGTTGGGGCGAGAGG
GGTCATTCACCCACAACACCAGATGATGCATCAACAAGCCATGCAACAGCCTGCCTTTAA
GTACACCCAGGGTGTTCGAAACCCAGCCATGGCTGGATATCCACAGTCAGGTCAACCACA
AGCCCAACAACAAGCTGATCAAAGTTTGCAACAAGCTGTCCATGTACAGGGACAGGAACC
TTTGACATCGAGCATGTTGGCTTCCGCTCAACCACAAGAACAAAAACAAATGCTTGGTGA
GAGGTTGTACCCGTTGATTGAGCAAAGCCACCCCGACCTTGCATCTAAGATCACCGGAAT
GCTGCTCGAGATTGACAACTCTGAGTTGCTTCATATGTTGGAATCTCGCGAGTCCTTGAA
GGCTAAAGTTGAGGAGGCCGTGGCGGTGTTGCAAGCCCATCAAGTAAAGGTTGCTCAAGC
GTCTCGTCGTCCTGCTAATGCTACACCAGCTGCACAAGCACCTGCTGCTTTGCCAACTGA
AGGCCCTGCCCCTATCGCTGTTGGGGGCGCTCAGGAATAAATATGCTGCTCTTTTTACCA
AATATTTTAAAAACCTGCACCATTTGGGCATCTAAAAAAAATTGTAAAATTTCACCGAAA
AAAAAAATCGAAAAATTTGTTTTTACAACTTCTTTGCTAACAAAATTGACCCTAACTTTT
TCCTTGAATGCTCAAATGAGCGGAGAGCTTAAGCTTGTATATAGCTTTTACTTTGTGGTG
AGATTCCTTTTAAGTTGTGCCTATGGTAATATTAGAATTGTACAGAATATAACCATATGT
AGTTTTTGTTGCATGCTTTTAAAAAATGACAAAAAAATAGCAAAATAGTTGGGACTGCTG
ACACTACAGAAGTGAAAATTGTTAATAAATAAATAAATAGTAATTCTGAAATTAAAATGT
CCTGTTGTA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[3-130] 1.2E-25 - T[131-217] 4.9E-22 - T[218-298] 8.0E-22 - T[303-425] 1.5E-30 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[47-214] 2.92E-47 - T[228-415] 2.79E-45 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[49-127] 17.694 - T[137-213] 15.545 - T[229-311] 17.745 - T[337-413] 19.621 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[49-649] 3.4E-236 |
| SMART |
RRM_dom (IPR000504) - T[50-123] 3.9E-22 - T[138-209] 2.6E-20 - T[230-302] 1.3E-20 - T[338-409] 7.9E-27 |
| Pfam |
RRM_dom (IPR000504) - T[51-121] 1.1E-19 - T[139-205] 1.7E-17 - T[231-296] 2.9E-19 - T[339-406] 3.0E-20 |
| SMART |
RRM_dom_euk (IPR003954) - T[138-209] 1.0 - T[230-298] 3.9 - T[338-409] 0.86 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[522-657] 2.62E-44 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[576-653] 22.215 |
| Pfam |
PABP_HYD (IPR002004) - T[582-648] 7.6E-30 |
| SMART |
PABP_HYD (IPR002004) - T[588-651] 1.4E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 63.817 % | 793 | 0 |
| PABP4_HUMAN | 61.715 % | 778 | 0 |
| PABP3_HUMAN | 60.031 % | 727 | 0 |