- Transcript 'Moocci.CG.ELv1_2.S20...' >
- Transcript 'Boleac.CG.SB_v3.S678...' >
- Region 'REG00001303' >
- Transcript 'Moocci.CG.ELv1_2.S63...' >
- Transcript 'KH2012:KH.L108.12.v1...'
Transcript Model
Transcript Id
KH2012:KH.L108.12.v1.A.nonSL7-1
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
KhL108 [138,716 / 148,870]
Amino acid sequence
Length: 688
>KH.L108.12.v1.A.nonSL7-1
KKNLKPPKKRTKKVQNRKTFVFDSLKWNVIRKKKTMNSSGSTNYPMASLYVGDLHLDVTE
AMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNYDPIKGRPIRI
MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENGSKGYGFVH
FETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDE
KTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTD
ILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDDELREAFATYGT
ITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLT
AQYMQRMTSSMGVRMATPNQMIGQPFQAAAGASGYFMPFQGAQRTYMQSQIIRTTPRWQH
NPQGGFQMAGDMRSVGPRAPTTPAIRPMATQVGARGVIHPQHQMMHQQAMQQPAFKYTQG
VRNPAMAGYPQSGQPQAQQQADQSLQQAVHVQGQEPLTSSMLASAQPQEQKQMLGERLYP
LIEQSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVEEAVAVLQAHQVKVAQASRRP
ANATPAAQAPAALPTEGPAPIAVGGAQE
Nucleotide sequence
Length: 2,457
>KH2012:KH.L108.12.v1.A.nonSL7-1
AAAAAAAAATTTAAAACCGCCTAAAAAACGTACAAAAAAAGTACAAAATCGCAAAACCTT
TGTATTCGATTCTTTGAAGTGGAACGTAATACGAAAAAAGAAAACAATGAACAGCTCGGG
CTCAACTAATTATCCGATGGCATCTTTGTACGTTGGTGATCTTCACCTCGATGTTACGGA
AGCTATGCTTTATGAAAAGTTCTCCCAAGCTGGTCCTGTCCTCTCAATCAGGGTGTGCAG
GGACGTCATCACCCGTCGTTCGCTCGGATACGCCTATGTCAACTTTCAACAGCCAGCTGA
TGCTGAACGAGCCTTGGACACAATGAATTATGACCCCATCAAAGGTCGTCCCATTCGTAT
CATGTGGAGCCAACGTGACCCATCTCTTCGTAAATCTGGTGTCGGAAACATCTTTATCAA
GAACTTGGATAAATCTATTGACAACAAAGCTTTGTATGATACTTTCTCTGCTTTTGGAAA
CATTCTGTCTTGCAAGGTGTCTTGTAATGAAAATGGTTCAAAAGGTTACGGGTTCGTCCA
TTTTGAAACTGAGGAGGCCGGAATAAGAGCTATTGAGAAGGTGAATGGAATGTTGTTGAA
TGACAAGAAAGTGTTCGTTGGAAAGTTTTTGACAAGATCTGAACGCATCAAGAAGATGGG
TGAACGGGTTCGTCAGTTCACCAACGTTTACATCAAAAACTTCGGTGACAAATACGATGA
AAAGACGCTCCAAGTCATGTTTGAGAAATACGGCGTTGTGAAGAGCGTTGCAGTCATGCG
CGACCGAGATGGCAACTCCCGTGGTTTTGGATTCGTTGCGTACGACAGTCATGAGGAAGC
TCAAGCGGCCGTTGAAGCAATGAACGGGCAAGAGATTGAAGGAGCATCAGGTTCCACCGA
TATCTTGTACGTCGGTCGTGCGCAGAAGAAGCAGGAGCGACAACAAGAACTACGTGGTCA
ATACGAGCAGCAGAAACAGGAACGCATTCAACGTTTCCAGGGTGTTAACCTCTACGTTAA
GAACCTTGATGATAATGTCACCGATGATGAGCTCCGTGAAGCTTTCGCTACTTATGGGAC
GATCACAAGCGCTAAGATCATGTCTGATGGTGAAAGATCCCGTGGGTTTGGCTTCGTTTG
TTTTAGTTCACCCGAAGAAGCCACGAAGGCCGTGACAGAGATGAATGGAAGAATTGTGGG
GACCAAACCTTTGTATGTTGCGCTTGCTCAACGCAGGGAGGATAGGAAAGCACATCTAAC
AGCGCAATACATGCAACGAATGACGTCTAGCATGGGAGTTAGAATGGCAACGCCAAACCA
GATGATTGGCCAGCCCTTCCAAGCAGCAGCTGGCGCTTCAGGTTATTTCATGCCATTCCA
GGGAGCACAGAGGACTTACATGCAGAGTCAGATCATTAGAACGACACCAAGATGGCAGCA
CAACCCACAAGGAGGCTTCCAGATGGCGGGTGACATGCGCTCTGTTGGACCCCGTGCACC
CACAACCCCGGCTATTAGACCCATGGCCACCCAGGTTGGGGCGAGAGGGGTCATTCACCC
ACAACACCAGATGATGCATCAACAAGCCATGCAACAGCCTGCCTTTAAGTACACCCAGGG
TGTTCGAAACCCAGCCATGGCTGGATATCCACAGTCAGGTCAACCACAAGCCCAACAACA
AGCTGATCAAAGTTTGCAACAAGCTGTCCATGTACAGGGACAGGAACCTTTGACATCGAG
CATGTTGGCTTCCGCTCAACCACAAGAACAAAAACAAATGCTTGGTGAGAGGTTGTACCC
GTTGATTGAGCAAAGCCACCCCGACCTTGCATCTAAGATCACCGGAATGCTGCTCGAGAT
TGACAACTCTGAGTTGCTTCATATGTTGGAATCTCGCGAGTCCTTGAAGGCTAAAGTTGA
GGAGGCCGTGGCGGTGTTGCAAGCCCATCAAGTAAAGGTTGCTCAAGCGTCTCGTCGTCC
TGCTAATGCTACACCAGCTGCACAAGCACCTGCTGCTTTGCCAACTGAAGGCCCTGCCCC
TATCGCTGTTGGGGGCGCTCAGGAATAAATATGCTGCTCTTTTTACCAAATATTTTAAAA
ACCTGCACCATTTGGGCATCTAAAAAAAATTGTAAAATTTCACCGAAAAAAAAAATCGAA
AAATTTGTTTTTACAACTTCTTTGCTAACAAAATTGACCCTAACTTTTTCCTTGAATGCT
CAAATGAGCGGAGAGCTTAAGCTTGTATATAGCTTTTACTTTGTGGTGAGATTCCTTTTA
AGTTGTGCCTATGGTAATATTAGAATTGTACAGAATATAACCATATGTAGTTTTTGTTGC
ATGCTTTTAAAAAATGACAAAAAAATAGCAAAATAGTTGGGACTGCTGACACTACAGAAG
TGAAAATTGTTAATAAATAAATAAATAGTAATTCTGAAATTAAAATGTCCTGTTGTA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-128] 1.2E-25 - T[129-215] 4.9E-22 - T[216-296] 8.0E-22 - T[301-423] 1.5E-30 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[45-212] 2.92E-47 - T[226-414] 2.12E-45 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[47-125] 17.694 - T[135-211] 15.545 - T[227-309] 17.745 - T[335-411] 19.621 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[47-647] 3.3E-236 |
| SMART |
RRM_dom (IPR000504) - T[48-121] 3.9E-22 - T[136-207] 2.6E-20 - T[228-300] 1.3E-20 - T[336-407] 7.9E-27 |
| Pfam |
RRM_dom (IPR000504) - T[49-119] 1.1E-19 - T[137-203] 1.7E-17 - T[229-294] 2.9E-19 - T[337-404] 3.0E-20 |
| SMART |
RRM_dom_euk (IPR003954) - T[136-207] 1.0 - T[228-296] 3.9 - T[336-407] 0.86 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[520-655] 2.62E-44 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[574-651] 22.215 |
| Pfam |
PABP_HYD (IPR002004) - T[580-646] 7.5E-30 |
| SMART |
PABP_HYD (IPR002004) - T[586-649] 1.4E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 63.817 % | 794 | 0 |
| PABP4_HUMAN | 61.715 % | 778 | 0 |
| PABP3_HUMAN | 60.031 % | 727 | 0 |