Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L108.56.v1.B.nonSL3-1

Possible name(s)

DEPDC1; DEPDC1B; DEPDC7

Gene model

KH2012:KH.L108.56

Location

KhL108 [401,642 / 405,489]

Sequences

Amino acid sequence

Length: 433

>KH.L108.56.v1.B.nonSL3-1
KSNHNIGKDVTRQQTLQLLRKFLKNHIIEDINGKWGSENLVDDSHLYRQPLSTVNENVNH
NRVSKKLKSKIKEPKNKKETKKQESDRESTCSSGSLTPSPARRFSMRPLPPVPQCKVEPR
VLTEQEEDKVWKDIVLQRIKKSMNLKSLENLMQTQDINGGWVKHNATKVGKSGVVQVSID
EDLPYWALSAMTCLANWPNGKDTGLPCYRGFEHDVFKAICDFYCYGRSTTKPTNQSNHSD
QHIYSSIKTSEPLLTYDLYELFTNILCMARPETKEVAIECLQLCLMLLPPSNRRKLHLLL
RLMAKVSGNPHLTNMSKNMPTRVLLLHTFSRHILSCFEEVYLDELLAMRLVTFLIDHHKD
VMEVPTGLVDRVNEKLERLRRPTGTTKARSFNIHISLERTQNLRTLKYSVVQSQLKPSSH
LPRAHVPSLMMGM

Nucleotide sequence

Length: 1,323

>KH2012:KH.L108.56.v1.B.nonSL3-1
GAAAAGCAATCACAATATTGGGAAAGACGTTACACGCCAACAGACACTTCAGCTTTTGAG
AAAGTTTTTGAAAAACCACATTATTGAAGACATTAACGGTAAATGGGGGAGTGAAAACTT
GGTGGATGACAGCCATCTTTATAGACAACCACTTTCAACAGTTAACGAAAACGTCAATCA
CAACAGAGTTTCAAAAAAATTAAAATCTAAAATAAAAGAACCGAAGAATAAAAAAGAAAC
AAAAAAACAAGAAAGCGATCGAGAATCAACGTGCAGTTCCGGTTCGTTGACTCCCTCCCC
GGCCCGCCGCTTCAGCATGCGTCCTCTACCCCCGGTCCCACAATGCAAAGTTGAGCCCCG
AGTTTTAACGGAGCAAGAAGAGGACAAAGTATGGAAAGACATTGTTTTGCAGCGAATTAA
GAAATCTATGAATTTAAAGTCACTTGAAAATCTTATGCAAACTCAAGATATTAATGGTGG
TTGGGTTAAACACAATGCCACAAAAGTTGGTAAGAGTGGGGTGGTTCAAGTTTCTATTGA
TGAAGATCTACCTTACTGGGCTCTAAGTGCAATGACATGTCTCGCTAATTGGCCGAATGG
CAAAGACACAGGCCTTCCCTGCTACAGAGGTTTCGAACATGACGTATTTAAAGCGATTTG
TGATTTCTATTGCTACGGGCGTTCTACCACGAAACCAACAAACCAATCAAATCACTCGGA
CCAACATATCTACTCATCCATAAAAACGAGCGAACCGTTACTTACATATGATCTCTATGA
GCTATTCACGAACATCTTATGCATGGCGCGACCGGAAACGAAAGAGGTTGCCATCGAATG
TTTACAACTCTGCCTCATGCTGTTACCACCTAGCAACAGAAGGAAACTTCATCTGTTGTT
AAGATTGATGGCAAAAGTTTCAGGGAATCCTCATCTTACTAATATGAGCAAGAACATGCC
TACAAGGGTGTTGCTTCTCCACACATTCTCACGTCACATTCTCTCCTGCTTTGAAGAGGT
TTATCTGGATGAGTTGCTCGCAATGAGACTTGTAACATTTCTTATTGACCACCATAAAGA
TGTCATGGAGGTGCCAACTGGTTTGGTTGACAGAGTGAATGAAAAATTGGAAAGATTGAG
AAGGCCTACGGGGACAACGAAGGCTCGTTCGTTCAATATTCATATTTCCCTGGAACGAAC
ACAAAACTTGCGCACGTTGAAATACTCAGTCGTTCAAAGTCAGTTGAAGCCATCAAGTCA
CTTACCACGGGCCCACGTGCCAAGTTTAATGATGGGGATGTGAAAGAAAAATCTAAACAG
TAA

InterProScan

Gene3D	WH-like_DNA-bd_sf (IPR036388) - T[1-50] 2.2E-7
Gene3D	Rho_GTPase_activation_prot (IPR008936) - T[248-376] 9.1E-14
SUPERFAMILY	Rho_GTPase_activation_prot (IPR008936) - T[248-358] 2.75E-13
Pfam	RhoGAP_dom (IPR000198) - T[249-317] 1.9E-7

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
DEP1B_HUMAN	38.517 %	264	5.77E-83
DEP1A_HUMAN	33.456 %	158	3.59E-42