- Transcript 'KH2012:KH.L116.36.v3...'
Transcript Model
Transcript Id
KH2012:KH.L116.36.v3.A.SL4-1
Possible name(s)
NVL; SPATA5; VCP
Gene model
Location
KhL116 [715,672 / 722,586]
Amino acid sequence
Length: 750
>KH.L116.36.v3.A.SL4-1
YVETHSGFVDVQFMADCLYKQYRFDYGRRKLNPFRKLVGKVYADLLKTEEIQNNLPPSSE
TSDDEKVLVEYKDSNTMNNSLHAIYNNVSLVKSPKPPSLSPQNYEQINQSLLPDDTKDEN
LTINQDSAGSNANVTQHNLVTNEDRLKENKKKLRRKRSKMEQNKKNLKKLKTDPNDSDDF
HSPNKKKFSFIDSQVSFVDVAGNQDALNELARLLLHMCHPEVYSALGVSPPRGILLHGPP
GCGKTLLGNAIAGQLGIPLLRLVGPELIGGVSGESEQRIRDVFEIAQQTAPCVLFLDEVD
VIAQRRENSSKDMERRVVAQLLSCLDDFNKDSQQVLVVGATNRPEVLDPALRRSGRFDRE
IMLGIPDESAREKILKVLSQKMKLSDDVNFGLIARLTPGFVGADILSLCREAAMQTVARV
LNINKTNTVTDEQLELMAIETSDFEEALCVVQPSSKREGFATVPDVTWDDVGALTDVREE
LSIAILGPVRNPMAFASLGLSRASGVLLAGPPGCGKTLLAKAIANESGINFISVKGPELL
NMYVGESERAVRQCFERARNSAPCVVFFDELDSLCPRRTSAESGASARVVNQMLTELDGL
ESRKQVFVVAATNRPDIIDPAILRPGRLDKVLYVGIPTTEDRIQILRTITKNGKKPLLDE
AVCLSNLGADDRCSGFTGADLSALMREASLDAIRGSVNHGWNVVLPQSDNNFHSIKITLV
NINAAFKKVKPSVSEQDRLLYEEMKRKFTK
Nucleotide sequence
Length: 2,259
>KH2012:KH.L116.36.v3.A.SL4-1
TATGTGGAGACTCACAGTGGATTTGTGGATGTACAATTCATGGCTGACTGTTTGTATAAA
CAATACAGATTTGATTATGGGAGAAGAAAATTGAATCCATTTAGAAAGTTGGTTGGGAAA
GTTTATGCCGATTTGTTAAAGACAGAAGAAATTCAAAACAATTTACCTCCCAGCTCAGAA
ACATCAGATGATGAAAAGGTGTTGGTGGAATACAAGGATAGCAACACAATGAACAACTCA
CTTCACGCCATTTACAACAATGTTAGCCTAGTTAAATCACCCAAACCTCCAAGTTTATCT
CCTCAAAACTATGAACAAATCAATCAAAGTTTACTTCCAGATGATACAAAAGATGAAAAC
TTAACAATCAACCAAGACTCAGCTGGTAGCAATGCAAATGTTACTCAGCACAATTTGGTC
ACAAACGAAGACCGCTTAAAAGAAAATAAAAAAAAACTTAGAAGAAAGCGATCAAAAATG
GAACAAAATAAAAAAAATTTAAAGAAATTGAAGACCGACCCAAATGACTCGGATGACTTC
CATTCACCAAATAAAAAGAAATTTTCATTTATAGATTCTCAAGTTTCATTTGTTGATGTT
GCAGGAAACCAAGATGCATTGAATGAACTCGCTCGTCTCTTACTTCACATGTGTCATCCC
GAGGTCTATTCAGCCCTGGGTGTTTCCCCTCCACGTGGTATTTTATTACATGGACCTCCA
GGTTGTGGAAAAACTTTACTTGGTAACGCCATAGCTGGTCAGTTAGGGATTCCTCTGTTA
CGCTTGGTTGGTCCGGAGTTAATTGGAGGTGTTTCGGGTGAAAGTGAACAGCGTATTCGT
GATGTTTTTGAGATCGCTCAACAAACAGCTCCATGTGTTTTATTTCTGGATGAAGTTGAT
GTCATCGCGCAACGAAGAGAAAATTCATCAAAAGACATGGAGCGAAGAGTAGTCGCGCAA
CTTTTGTCATGCTTGGATGATTTTAACAAAGATAGTCAACAAGTGTTGGTCGTCGGGGCA
ACCAATCGTCCTGAAGTTCTTGATCCAGCTCTTCGAAGATCTGGAAGGTTTGATCGTGAG
ATTATGTTGGGCATTCCCGATGAATCAGCCAGAGAAAAAATATTGAAAGTTCTTAGTCAA
AAAATGAAATTATCTGATGACGTCAATTTTGGTTTGATTGCTCGTTTAACTCCCGGATTT
GTCGGAGCTGATATACTATCTCTATGTCGTGAAGCTGCAATGCAAACAGTCGCTCGTGTT
CTTAACATAAATAAAACAAACACAGTAACTGATGAACAATTGGAATTGATGGCGATTGAA
ACAAGTGATTTCGAAGAAGCGTTGTGTGTCGTGCAACCTTCATCAAAACGTGAAGGATTT
GCGACAGTTCCTGATGTGACATGGGATGATGTTGGTGCACTGACCGATGTTAGAGAAGAA
CTTTCCATTGCGATATTGGGCCCAGTTAGAAACCCGATGGCGTTTGCATCACTTGGATTG
TCGAGAGCATCCGGAGTATTATTAGCTGGTCCTCCAGGCTGCGGAAAAACTCTGCTCGCA
AAAGCGATCGCCAACGAATCTGGGATAAATTTTATTTCAGTGAAAGGACCTGAGCTTCTC
AACATGTATGTTGGTGAAAGTGAACGAGCTGTAAGGCAATGTTTTGAACGAGCGAGGAAT
TCTGCTCCTTGTGTGGTCTTCTTTGATGAACTTGATTCACTTTGTCCTCGAAGGACATCG
GCCGAGAGTGGAGCAAGTGCAAGAGTGGTCAATCAAATGTTAACCGAACTTGATGGCCTG
GAATCAAGAAAACAAGTTTTTGTTGTTGCTGCGACCAACAGACCCGATATTATTGATCCA
GCGATACTCAGGCCTGGTCGACTAGATAAAGTACTTTACGTTGGAATTCCAACCACGGAG
GATAGAATTCAAATATTAAGAACAATAACAAAGAATGGAAAGAAACCTCTTCTTGATGAA
GCTGTCTGTTTGTCCAACCTCGGTGCTGATGATCGTTGTAGCGGATTTACAGGGGCTGAT
TTGTCTGCACTCATGCGTGAAGCATCATTAGATGCAATCCGTGGGAGCGTCAACCATGGT
TGGAATGTTGTTTTGCCACAAAGTGATAATAATTTCCATTCAATAAAGATAACCTTGGTA
AATATTAATGCTGCTTTCAAGAAAGTCAAACCATCAGTTAGTGAACAGGATCGTTTATTA
TACGAAGAAATGAAACGAAAGTTTACAAAATAAAAACAA
| Gene3D |
NLV2_N_sf (IPR038100) - T[1-53] 9.2E-11 |
| Pfam |
NVL2_nucleolin-bd (IPR031996) - T[4-49] 5.9E-12 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[195-458] 1.05E-59 - T[464-746] 2.61E-63 |
| SMART |
AAA+_ATPase (IPR003593) - T[230-367] 3.4E-23 - T[502-638] 3.4E-22 |
| Pfam |
ATPase_AAA_core (IPR003959) - T[234-363] 7.1E-42 - T[506-635] 1.5E-47 |
| ProSitePatterns |
ATPase_AAA_CS (IPR003960) - T[335-353] . - T[606-624] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPAT5_HUMAN | 36.422 % | 395 | 3.44E-125 |
| TERA_HUMAN | 46.414 % | 463 | 2.02E-152 |
| NVL_HUMAN | 47.733 % | 728 | 0 |