Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.L116.81.v2.A.ND2-1

Possible name(s)

GTDC1

Gene model

KH2012:KH.L116.81

Location

KhL116 [612,426 / 614,831]

Sequences

Amino acid sequence

Length: 162

>KH.L116.81.v2.A.ND2-1
MGKRYFCEYCQRGFQDNLTARNKHLKSSIHIKNKQLWYHQFRDTQSLYNDALRKKPCQSY
LATGVCQFGNHCNYRHLSDQELYNLKQSIENEPLLSNEEILAKWFVQRKSTEDLKKEERE
TIDDETSYLKVPPNLKPFGLLPPSLQPPPYICCLTTCFNEWG

Nucleotide sequence

Length: 715

>KH2012:KH.L116.81.v2.A.ND2-1
TATACCAGCCACTTTAGTGATATCTAATCTTTATGACATTTTGTATTAGTTAAAGTTGTT
GAACTAAATGGGAAAGAGATACTTTTGTGAATATTGCCAACGAGGATTCCAGGACAATCT
TACTGCGAGAAACAAACACTTAAAAAGCAGCATCCACATAAAGAATAAACAACTTTGGTA
TCACCAGTTTAGAGATACACAAAGCTTATACAATGATGCTCTGAGAAAAAAACCTTGTCA
AAGTTATCTTGCTACGGGTGTGTGCCAGTTTGGAAATCATTGCAACTACAGACATCTATC
TGACCAAGAGCTTTATAATCTAAAACAAAGCATAGAAAATGAACCTCTTCTATCCAATGA
AGAAATATTAGCTAAATGGTTTGTTCAACGGAAATCTACTGAAGATTTGAAGAAGGAAGA
AAGAGAAACCATTGATGATGAAACGTCATATTTGAAAGTTCCACCTAATTTAAAACCGTT
TGGATTGTTGCCTCCCTCTTTGCAGCCACCACCATATATATGCTGTTTAACTACTTGTTT
TAATGAGTGGGGTTGATGAATATTAGTTTCTTATTGTTGTTCTTAATAATTTAGAGCAGT
TATATATTGCTGCTCCAACCTCTTTTTTCTTAGACTATGTACGTTCACTAGGTTTGGATT
TTTTAACTGGAATGATTTATCACAGGACACAAGTAATGGTTTTGTTCTAAACATT

InterProScan

SUPERFAMILY	Znf_C2H2_sf (IPR036236) - T[2-60] 8.33E-14
Pfam	U1-CZ_Znf_C2H2 (IPR013085) - T[3-37] 9.1E-6
ProSiteProfiles	Znf_CCCH (IPR000571) - T[51-79] 13.216
SUPERFAMILY	Znf_CCCH_sf (IPR036855) - T[52-77] 4.32E-6
Pfam	Znf_CCCH (IPR000571) - T[55-76] 3.5E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ZMAT5_HUMAN	39.623 %	113	2.39E-32