- Region 'REG00001387' >
- Region 'REG00001372' >
- Transcript 'KH2012:KH.L147.10.v1...'
Transcript Model
Transcript Id
KH2012:KH.L147.10.v1.A.nonSL4-2
Possible name(s)
KATNB1; TAF5; TAF5L
Gene model
Location
KhL147 [231,484 / 240,450]
Amino acid sequence
Length: 630
>KH.L147.10.v1.A.nonSL4-2
LTMKRSRSEHIQTAVLNYLKKRNYTDSEATFKQNFKLEETLLEMTSRVLRNNKISKSDSV
SFSIGSLDDYFHSFLELKTFVEKCVAQRKHSKLKGILFPVFIHSFLDLLLADRSTESTSY
LRRFGSVFDQSHRLLIKQIENLGIPQDQANLDMIEELRNCNGKIVLTDDDQLALKIFLQT
QENLSLMKIINDRIQIVLPETDDQLNLSNGDFTSTNTSPQKVLSASKTPTKAKVEAMETA
ITNQQPIIISPPSVATTTNTTPSKHSTAPPVASLVSDITIADARKIIDDVRKSPPALTDL
TLIKFKGEGLIHATPSQDHSYIATGFDNSTVKLWRQGNRIPDCNLPTPDISCVHLGSDAL
EDVYDRLSMKTQQDVTSLNEDGVVSLHGHSGPVYDSCFTSDNKFLITCAEDSTVRLWDMQ
DLKNKVIYDAHNRPVWCVDISAYDLYFATGSADHTARLWTTERTYPLRTYAGHQDSVGAI
AFHGNCSYLATADRVVRVWDVNSGKPVRVMTGHWAPVMCVAFSSNGRMLASAGEDYRIRL
WDVSSGNLVKEMRAHTDTIYSLAFNYDGSLLASCGADCSVYCWNTATISTTGDQKNQHLV
AQWSLPNSTQSLINVDFKSTNKLFCYASAT
Nucleotide sequence
Length: 1,979
>KH2012:KH.L147.10.v1.A.nonSL4-2
AGTATCTAGTTGACAATGAAACGGTCACGTAGTGAGCATATCCAAACTGCTGTACTAAAT
TATTTGAAAAAACGAAACTATACCGATTCGGAAGCAACTTTTAAGCAGAATTTCAAGTTG
GAAGAAACGTTATTGGAAATGACATCTCGTGTTTTAAGAAATAATAAAATATCGAAGTCA
GACAGCGTCTCATTTTCGATTGGCTCACTCGATGATTATTTTCATTCTTTCCTTGAATTA
AAGACGTTTGTCGAAAAATGTGTCGCTCAAAGAAAACATTCTAAATTAAAAGGCATTTTA
TTTCCCGTCTTCATTCATTCGTTTCTCGACCTATTATTGGCCGATCGTTCAACCGAATCC
ACCTCATATTTACGAAGGTTTGGTTCAGTTTTCGACCAATCACATCGCTTGCTGATTAAG
CAGATTGAAAATCTGGGGATTCCCCAAGACCAAGCTAATTTAGACATGATTGAAGAACTA
CGAAATTGCAACGGCAAAATTGTTCTAACGGATGACGATCAACTTGCTTTAAAAATATTT
CTTCAGACCCAGGAAAATTTATCACTTATGAAAATTATCAATGATCGTATACAGATCGTG
CTACCAGAGACAGATGATCAACTGAATTTATCTAATGGTGATTTTACTTCTACCAACACT
TCACCTCAAAAAGTTCTTTCTGCTAGTAAAACTCCAACTAAGGCCAAAGTAGAAGCCATG
GAAACTGCCATCACAAATCAACAACCAATCATAATCAGCCCTCCTTCTGTTGCCACGACA
ACTAACACTACGCCTTCTAAACACTCCACAGCTCCACCAGTGGCATCTTTAGTCAGTGAC
ATCACAATAGCAGATGCTCGTAAAATAATCGATGACGTAAGAAAATCTCCACCTGCTCTG
ACAGACCTTACACTTATAAAATTTAAAGGAGAAGGTTTAATACATGCCACACCATCTCAG
GACCACAGTTATATTGCAACAGGGTTTGACAACTCCACTGTGAAACTATGGCGTCAAGGA
AATCGTATACCAGACTGTAACCTTCCCACCCCTGATATATCATGCGTGCATCTTGGTAGT
GATGCACTTGAAGATGTATACGACAGATTATCTATGAAAACCCAGCAAGATGTTACAAGT
TTAAATGAGGATGGTGTAGTGTCACTGCATGGGCATAGTGGGCCTGTGTACGATTCTTGT
TTCACAAGTGATAATAAGTTTTTAATAACTTGTGCTGAGGATTCTACAGTGAGATTATGG
GACATGCAGGATTTAAAGAACAAAGTTATTTACGATGCTCATAACAGACCAGTATGGTGT
GTGGATATCAGTGCTTACGATTTATACTTCGCTACGGGATCTGCGGACCATACAGCTCGA
CTGTGGACGACAGAGCGTACATACCCCTTACGAACTTACGCTGGCCATCAGGACAGCGTT
GGAGCCATTGCTTTCCATGGTAACTGTAGTTACTTAGCTACAGCGGATAGAGTTGTGAGG
GTATGGGATGTAAATAGTGGGAAGCCCGTTCGTGTAATGACTGGGCATTGGGCCCCAGTT
ATGTGTGTGGCCTTCTCAAGTAATGGACGAATGTTAGCAAGCGCTGGTGAAGATTACAGG
ATCAGGTTATGGGATGTTTCCTCTGGTAACTTAGTCAAGGAAATGCGTGCACACACAGAC
ACAATATATTCTCTTGCTTTCAACTATGATGGCTCTCTACTGGCATCGTGTGGTGCTGAT
TGTTCAGTATATTGTTGGAACACCGCTACTATATCTACTACAGGTGATCAAAAGAACCAG
CATTTAGTTGCACAGTGGAGTCTCCCAAATTCAACACAAAGTTTAATAAACGTCGATTTT
AAATCGACCAATAAGTTATTTTGTTACGCTTCTGCTACGTGAATTGATTAAATTTTTATA
TTTTCATTTTGGATTGATCAGTTAAAGGTATAAATTACATGAAACAAATTTGTATAAAA
| ProSiteProfiles |
LisH (IPR006594) - T[7-39] 7.84 |
| Gene3D |
TFIID_NTD2_sf (IPR037264) - T[48-198] 2.4E-19 |
| SUPERFAMILY |
TFIID_NTD2_sf (IPR037264) - T[52-197] 3.79E-27 |
| CDD |
TFIID_NTD2 (IPR007582) - T[67-196] 2.05508E-31 |
| Pfam |
TFIID_NTD2 (IPR007582) - T[68-193] 2.1E-18 |
| SMART |
WD40_repeat (IPR001680) - T[298-335] 14.0 - T[379-418] 5.3E-8 - T[421-460] 4.5E-6 - T[463-500] 4.9E-5 - T[503-542] 3.7E-9 - T[545-584] 8.3E-10 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[314-338] 9.94E-65 - T[380-626] 9.94E-65 |
| Pfam |
WD40_repeat (IPR001680) - T[384-418] 8.1E-6 - T[426-459] 6.0E-5 - T[466-500] 2.6E-5 - T[504-542] 6.8E-9 - T[546-584] 3.1E-6 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[386-593] 49.83 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[386-420] 14.084 - T[428-469] 11.344 - T[470-509] 10.943 - T[510-551] 16.624 - T[552-593] 12.046 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[405-419] 1.6E-6 - T[447-461] 1.6E-6 - T[529-543] 1.6E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[405-419] . - T[487-501] . - T[529-543] . |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[464-628] 2.7E-44 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| KTNB1_HUMAN | 29.756 % | 112 | 5.87E-26 |
| TAF5_HUMAN | 29.423 % | 239 | 6.67E-69 |
| TAF5L_HUMAN | 33.176 % | 312 | 2.63E-98 |