Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 630

>KH.L147.10.v2.A.SL3-1
LTMKRSRSEHIQTAVLNYLKKRNYTDSEATFKQNFKLEETLLEMTSRVLRNNKISKSDSV
SFSIGSLDDYFHSFLELKTFVEKCVAQRKHSKLKGILFPVFIHSFLDLLLADRSTESTSY
LRRFGSVFDQSHRLLIKQIENLGIPQDQANLDMIEELRNCNGKIVLTDDDQLALKIFLQT
QENLSLMKIINDRIQIVLPETDDQLNLSNGDFTSTNTSPQKVLSASKTPTKAKVEAMETA
ITNQQPIIISPPSVATTTNTTPSKHSTAPPVASLVSDITIADARKIIDDVRKSPPALTDL
TLIKFKGEGLIHATPSQDHSYIATGFDNSTVKLWRQGNRIPDCNLPTPDISCVHLGSDAL
EDVYDRLSMKTQQDVTSLNEDGVVSLHGHSGPVYDSCFTSDNKFLITCAEDSTVRLWDMQ
DLKNKVIYDAHNRPVWCVDISAYDLYFATGSADHTARLWTTERTYPLRTYAGHQDSVGAI
AFHGNCSYLATADRVVRVWDVNSGKPVRVMTGHWAPVMCVAFSSNGRMLASAGEDYRIRL
WDVSSGNLVKEMRAHTDTIYSLAFNYDGSLLASCGADCSVYCWNTATISTTGDQKNQHLV
AQWSLPNSTQSLINVDFKSTNKLFCYASAT

Nucleotide sequence

Length: 1,924

>KH2012:KH.L147.10.v2.A.SL3-1
TATCTAGTTGACAATGAAACGGTCACGTAGTGAGCATATCCAAACTGCTGTACTAAATTA
TTTGAAAAAACGAAACTATACCGATTCGGAAGCAACTTTTAAGCAGAATTTCAAGTTGGA
AGAAACGTTATTGGAAATGACATCTCGTGTTTTAAGAAATAATAAAATATCGAAGTCAGA
CAGCGTCTCATTTTCGATTGGCTCACTCGATGATTATTTTCATTCTTTCCTTGAATTAAA
GACGTTTGTCGAAAAATGTGTCGCTCAAAGAAAACATTCTAAATTAAAAGGCATTTTATT
TCCCGTCTTCATTCATTCGTTTCTCGACCTATTATTGGCCGATCGTTCAACCGAATCCAC
CTCATATTTACGAAGGTTTGGTTCAGTTTTCGACCAATCACATCGCTTGCTGATTAAGCA
GATTGAAAATCTGGGGATTCCCCAAGACCAAGCTAATTTAGACATGATTGAAGAACTACG
AAATTGCAACGGCAAAATTGTTCTAACGGATGACGATCAACTTGCTTTAAAAATATTTCT
TCAGACCCAGGAAAATTTATCACTTATGAAAATTATCAATGATCGTATACAGATCGTGCT
ACCAGAGACAGATGATCAACTGAATTTATCTAATGGTGATTTTACTTCTACCAACACTTC
ACCTCAAAAAGTTCTTTCTGCTAGTAAAACTCCAACTAAGGCCAAAGTAGAAGCCATGGA
AACTGCCATCACAAATCAACAACCAATCATAATCAGCCCTCCTTCTGTTGCCACGACAAC
TAACACTACGCCTTCTAAACACTCCACAGCTCCACCAGTGGCATCTTTAGTCAGTGACAT
CACAATAGCAGATGCTCGTAAAATAATCGATGACGTAAGAAAATCTCCACCTGCTCTGAC
AGACCTTACACTTATAAAATTTAAAGGAGAAGGTTTAATACATGCCACACCATCTCAGGA
CCACAGTTATATTGCAACAGGGTTTGACAACTCCACTGTGAAACTATGGCGTCAAGGAAA
TCGTATACCAGACTGTAACCTTCCCACCCCTGATATATCATGCGTGCATCTTGGTAGTGA
TGCACTTGAAGATGTATACGACAGATTATCTATGAAAACCCAGCAAGATGTTACAAGTTT
AAATGAGGATGGTGTAGTGTCACTGCATGGGCATAGTGGGCCTGTGTACGATTCTTGTTT
CACAAGTGATAATAAGTTTTTAATAACTTGTGCTGAGGATTCTACAGTGAGATTATGGGA
CATGCAGGATTTAAAGAACAAAGTTATTTACGATGCTCATAACAGACCAGTATGGTGTGT
GGATATCAGTGCTTACGATTTATACTTCGCTACGGGATCTGCGGACCATACAGCTCGACT
GTGGACGACAGAGCGTACATACCCCTTACGAACTTACGCTGGCCATCAGGACAGCGTTGG
AGCCATTGCTTTCCATGGTAACTGTAGTTACTTAGCTACAGCGGATAGAGTTGTGAGGGT
ATGGGATGTAAATAGTGGGAAGCCCGTTCGTGTAATGACTGGGCATTGGGCCCCAGTTAT
GTGTGTGGCCTTCTCAAGTAATGGACGAATGTTAGCAAGCGCTGGTGAAGATTACAGGAT
CAGGTTATGGGATGTTTCCTCTGGTAACTTAGTCAAGGAAATGCGTGCACACACAGACAC
AATATATTCTCTTGCTTTCAACTATGATGGCTCTCTACTGGCATCGTGTGGTGCTGATTG
TTCAGTATATTGTTGGAACACCGCTACTATATCTACTACAGGTGATCAAAAGAACCAGCA
TTTAGTTGCACAGTGGAGTCTCCCAAATTCAACACAAAGTTTAATAAACGTCGATTTTAA
ATCGACCAATAAGTTATTTTGTTACGCTTCTGCTACGTGAATTGATTAAATTTTTCTATT
TTCA

InterProScan

ProSiteProfiles	LisH (IPR006594) - T[7-39] 7.84
Gene3D	TFIID_NTD2_sf (IPR037264) - T[48-198] 2.4E-19
SUPERFAMILY	TFIID_NTD2_sf (IPR037264) - T[52-197] 3.79E-27
CDD	TFIID_NTD2 (IPR007582) - T[67-196] 2.05508E-31
Pfam	TFIID_NTD2 (IPR007582) - T[68-193] 2.1E-18
SMART	WD40_repeat (IPR001680) - T[298-335] 14.0 - T[379-418] 5.3E-8 - T[421-460] 4.5E-6 - T[463-500] 4.9E-5 - T[503-542] 3.7E-9 - T[545-584] 8.3E-10
SUPERFAMILY	WD40_repeat_dom_sf (IPR036322) - T[314-338] 9.94E-65 - T[380-626] 9.94E-65
Pfam	WD40_repeat (IPR001680) - T[384-418] 8.1E-6 - T[426-459] 6.0E-5 - T[466-500] 2.6E-5 - T[504-542] 6.8E-9 - T[546-584] 3.1E-6
ProSiteProfiles	WD40_repeat_dom (IPR017986) - T[386-593] 49.83
ProSiteProfiles	WD40_repeat (IPR001680) - T[386-420] 14.084 - T[428-469] 11.344 - T[470-509] 10.943 - T[510-551] 16.624 - T[552-593] 12.046
PRINTS	G-protein_beta_WD-40_rep (IPR020472) - T[405-419] 1.6E-6 - T[447-461] 1.6E-6 - T[529-543] 1.6E-6
ProSitePatterns	WD40_repeat_CS (IPR019775) - T[405-419] . - T[487-501] . - T[529-543] .
Gene3D	WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[464-628] 2.7E-44