Aniseed - Transcript Card

Transcript 'KH2012:KH.L154.4.v3....'

Transcript Model

Transcript Id

KH2012:KH.L154.4.v3.A.nonSL6-1

Possible name(s)

ACTA2; ACTB; ACTG1

Gene model

KH2012:KH.L154.4

Location

KhL154 [170,673 / 172,693]

Sequences

Amino acid sequence

Length: 305

>KH.L154.4.v3.A.nonSL6-1
INMDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQANREKMTQIMFETFNTP
AMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM
KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITV
GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIA
DRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV
HRKCF

Nucleotide sequence

Length: 1,384

>KH2012:KH.L154.4.v3.A.nonSL6-1
TTTAATCTACACAAACAATAAATCAACATGGATGATGATGTTGCCGCACTCGTAGTCGAC
AATGGATCCGGTATGTGCAAGGCCGGTTTCGCCGGAGACGACGCACCACGTGCCGTTTTC
CCATCCATCGTAGGACGACCCCGTCACCAGGCTAACCGTGAAAAGATGACCCAAATCATG
TTCGAAACCTTCAACACCCCCGCCATGTACGTCGCCATCCAGGCTGTGCTTTCATTGTAC
GCTTCTGGTCGTACCACCGGTATTGTGTTCGACAGTGGTGATGGTGTTTCCCACACCGTC
CCAATCTACGAGGGTTACGCCCTTCCCCACGCCATCCTTCGTCTCGATTTGGCTGGACGA
GATCTTACCGATTACTTGATGAAGATCTTGACCGAGAGAGGTTATTCCTTCACCACCACT
GCCGAGCGTGAAATCGTTCGTGACATCAAGGAAAAACTTTGCTATGTTGCTCTTGACTTC
GAGCAAGAAATGCAAACCGCCGCCAGCAGCAGCTCACTCGAGAAGAGCTACGAACTTCCT
GACGGACAGGTTATCACCGTCGGAAACGAGCGATTCCGTTGCCCAGAGGCCCTCTTCCAA
CCATCCTTCCTTGGTATGGAATCTGCTGGTATCCACGAGACCACCTACAACTCCATCATG
AAGTGCGATGTTGACATCCGTAAGGACTTGTACGCCAACACCGTTCTCTCTGGAGGTTCC
ACTATGTTCCCTGGAATCGCCGACAGAATGCAAAAGGAAATCACTGCTCTTGCACCACCA
ACCATGAAGATTAAGATCATTGCCCCACCAGAGAGGAAATACTCCGTCTGGATTGGAGGA
TCCATCCTTGCTTCACTCTCCACCTTCCAACAGATGTGGATCAGCAAACAAGAATACGAC
GAGTCCGGCCCATCCATTGTCCACCGCAAATGCTTCTAAATGCAATAATCATAACCTTAG
CCGAACTTTTAAAACTATTATATCGATTTGTTGTTGTGTAAAAACGTTTACATATATTTG
GGTTTATTTTTGTTCGAAGTACGTTGCGCCGGGCCAATCGAGGCTGCGTGTTACTTAACA
TCATACATTCCTAAACCGGCTTCAGCTGCTAAGTAACTGCACTGTGCACAATGCAGTGCT
TATCATTCCAATTCAATAAAGGACCAATACATCGGACATATTGTTTATAACCGCGTACCT
TGTTCTTTTGTTGTAATCAACACTGTTCGAATAATTTACGAAGTAACAATAAAAATACTC
GGAATACCCACACCAAAATTTGCATGGTCTGTCTCCATACAGTACTTATTGTAACATATA
TCGACTACATGGTGACTTAACAATGTTAAAGCGCAGTGTTGGAAAAATACAATTCCATTT
CCGA

InterProScan

PANTHER	Actin (IPR004000) - T[2-43] 1.5E-210 - T[43-304] 1.5E-210
SMART	Actin (IPR004000) - T[7-305] 3.5E-158
Pfam	Actin (IPR004000) - T[43-305] 1.8E-105
ProSitePatterns	Actin_CS (IPR004001) - T[286-294] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score
ACTG_HUMAN	96.198 %	529
ACTB_HUMAN	96.198 %	529
ACTC_HUMAN	93.156 %	518